RNA–Protein interactions for RNA: ENST00000602029.1

VRK3-226, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 578 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-226ENST00000602029 TRPT1Q86TN4 253 aaKnown RBP3.75□□□□□ -1.81
VRK3-226ENST00000602029 BPIFA4PQ86YQ2 179 aa3.75□□□□□ -1.81
VRK3-226ENST00000602029 ZNF664Q8N3J9 261 aa3.75□□□□□ -1.81
VRK3-226ENST00000602029 MAPKAPK5-AS1Q8N8E1 139 aa3.75□□□□□ -1.81
VRK3-226ENST00000602029 NHLRC2Q8NBF2 726 aa3.75□□□□□ -1.81
VRK3-226ENST00000602029 NPIPB3Q92617 1050 aa3.75□□□□□ -1.81
VRK3-226ENST00000602029 CHCHD1Q96BP2 118 aaKnown RBP3.75□□□□□ -1.81
VRK3-226ENST00000602029 SAMD10Q9BYL1 202 aa3.75□□□□□ -1.81
VRK3-226ENST00000602029 RPP21Q9H633 154 aaKnown RBP3.75□□□□□ -1.81
VRK3-226ENST00000602029 FNDC4Q9H6D8 234 aaPredicted RBP3.75□□□□□ -1.81
VRK3-226ENST00000602029 TRAV2A0A0B4J234 112 aa3.74□□□□□ -1.81
VRK3-226ENST00000602029 A0A1B0GXF2 115 aa3.74□□□□□ -1.81
VRK3-226ENST00000602029 TMEM189A5PLL7 270 aa3.74□□□□□ -1.81
VRK3-226ENST00000602029 C19orf71A6NCJ1 209 aa3.74□□□□□ -1.81
VRK3-226ENST00000602029 PGPEP1LA6NFU8 196 aa3.74□□□□□ -1.81
VRK3-226ENST00000602029 K7EQG2 157 aa3.74□□□□□ -1.81
VRK3-226ENST00000602029 M0R143 59 aa3.74□□□□□ -1.81
VRK3-226ENST00000602029 SERF1AO75920 110 aa3.74□□□□□ -1.81
VRK3-226ENST00000602029 SCGB1D1O95968 90 aa3.74□□□□□ -1.81
VRK3-226ENST00000602029 P01737 135 aa3.74□□□□□ -1.81
VRK3-226ENST00000602029 TCRAP04437 139 aa3.74□□□□□ -1.81
VRK3-226ENST00000602029 IL4P05112 153 aa3.74□□□□□ -1.81
VRK3-226ENST00000602029 SLC25A5P05141 298 aaKnown RBP3.74□□□□□ -1.81
VRK3-226ENST00000602029 IGLC1P0CG04 106 aa3.74□□□□□ -1.81
VRK3-226ENST00000602029 MGST1P10620 155 aaKnown RBP3.74□□□□□ -1.81
VRK3-226ENST00000602029 DAD1P61803 113 aa3.74□□□□□ -1.81
VRK3-226ENST00000602029 HBBP68871 147 aa3.74□□□□□ -1.81
VRK3-226ENST00000602029 PSG9Q00887 426 aa3.74□□□□□ -1.81
VRK3-226ENST00000602029 C16orf54Q6UWD8 224 aa3.74□□□□□ -1.81
VRK3-226ENST00000602029 PATE2Q6UY27 113 aa3.74□□□□□ -1.81
VRK3-226ENST00000602029 LINC00528Q8N1L1 170 aa3.74□□□□□ -1.81
VRK3-226ENST00000602029 BORCS7Q96B45 105 aa3.74□□□□□ -1.81
VRK3-226ENST00000602029 DAZAP1Q96EP5 407 aaKnown RBP3.74□□□□□ -1.81
VRK3-226ENST00000602029 MIEN1Q9BRT3 115 aa3.74□□□□□ -1.81
VRK3-226ENST00000602029 NDFIP1Q9BT67 221 aa3.74□□□□□ -1.81
VRK3-226ENST00000602029 VAMP8Q9BV40 100 aa3.74□□□□□ -1.81
VRK3-226ENST00000602029 GOLT1BQ9Y3E0 138 aa3.74□□□□□ -1.81
VRK3-226ENST00000602029 X6R8D5 127 aa3.74□□□□□ -1.81
VRK3-226ENST00000602029 DNAH5Q8TE73 4624 aa3.74□□□□□ -1.81
VRK3-226ENST00000602029 HMCN2Q8NDA2 5059 aa3.73□□□□□ -1.81
VRK3-226ENST00000602029 TEX48A0A1B0GUV7 120 aa3.73□□□□□ -1.81
VRK3-226ENST00000602029 HIGD1CA8MV81 97 aa3.73□□□□□ -1.81
VRK3-226ENST00000602029 H3BRN7 92 aa3.73□□□□□ -1.81
VRK3-226ENST00000602029 SLC17A3O00476 420 aa3.73□□□□□ -1.81
VRK3-226ENST00000602029 RTL8CO15255 209 aa3.73□□□□□ -1.81
VRK3-226ENST00000602029 CRXO43186 299 aaPredicted RBP3.73□□□□□ -1.81
VRK3-226ENST00000602029 NUDT3O95989 172 aa3.73□□□□□ -1.81
VRK3-226ENST00000602029 SRIP30626 198 aa3.73□□□□□ -1.81
VRK3-226ENST00000602029 ID1P41134 155 aa3.73□□□□□ -1.81
VRK3-226ENST00000602029 SMCPP49901 116 aaPredicted RBP3.73□□□□□ -1.81
VRK3-226ENST00000602029 LINC00310P59036 64 aa3.73□□□□□ -1.81
VRK3-226ENST00000602029 FAM222AQ5U5X8 452 aa3.73□□□□□ -1.81
VRK3-226ENST00000602029 EBLN2Q6P2I7 272 aa3.73□□□□□ -1.81
VRK3-226ENST00000602029 SIGLEC15Q6ZMC9 328 aa3.73□□□□□ -1.81
VRK3-226ENST00000602029 Q86TA4 180 aa3.73□□□□□ -1.81
VRK3-226ENST00000602029 NUP35Q8NFH5 326 aa3.73□□□□□ -1.81
VRK3-226ENST00000602029 NUDT10Q8NFP7 164 aa3.73□□□□□ -1.81
VRK3-226ENST00000602029 OR1B1Q8NGR6 318 aa3.73□□□□□ -1.81
VRK3-226ENST00000602029 C18orf32Q8TCD1 76 aa3.73□□□□□ -1.81
VRK3-226ENST00000602029 NUDT11Q96G61 164 aa3.73□□□□□ -1.81
VRK3-226ENST00000602029 SHANK2-AS3Q9BTD1 123 aa3.73□□□□□ -1.81
VRK3-226ENST00000602029 SLC25A39Q9BZJ4 359 aaPredicted RBP3.73□□□□□ -1.81
VRK3-226ENST00000602029 RNASE7Q9H1E1 156 aaKnown RBP3.73□□□□□ -1.81
VRK3-226ENST00000602029 Q9H3A6 140 aa3.73□□□□□ -1.81
VRK3-226ENST00000602029 AAMDCQ9H7C9 122 aa3.73□□□□□ -1.81
VRK3-226ENST00000602029 PPP1R14DQ9NXH3 145 aa3.73□□□□□ -1.81
VRK3-226ENST00000602029 TP53TG3Q9ULZ0 132 aa3.73□□□□□ -1.81
VRK3-226ENST00000602029 VPS13BQ7Z7G8 4022 aa3.73□□□□□ -1.81
VRK3-226ENST00000602029 TRBV19A0A075B6N1 114 aa3.72□□□□□ -1.81
VRK3-226ENST00000602029 A0A1B0GVY2 172 aa3.72□□□□□ -1.81
VRK3-226ENST00000602029 RBAKDNA6NC62 111 aa3.72□□□□□ -1.81
VRK3-226ENST00000602029 PGPA6NDG6 321 aa3.72□□□□□ -1.81
VRK3-226ENST00000602029 HSBP1O75506 76 aa3.72□□□□□ -1.81
VRK3-226ENST00000602029 RD3LP0DJH9 198 aa3.72□□□□□ -1.81
VRK3-226ENST00000602029 IGLC2P0DOY2 106 aa3.72□□□□□ -1.81
VRK3-226ENST00000602029 DEFB130BP0DP73 79 aa3.72□□□□□ -1.81
VRK3-226ENST00000602029 DEFB130AP0DP74 79 aa3.72□□□□□ -1.81
VRK3-226ENST00000602029 PYYP10082 97 aa3.72□□□□□ -1.81
VRK3-226ENST00000602029 PSG1P11464 419 aa3.72□□□□□ -1.81
VRK3-226ENST00000602029 RPL7P18124 248 aaKnown RBP3.72□□□□□ -1.81
VRK3-226ENST00000602029 ORM2P19652 201 aa3.72□□□□□ -1.81
VRK3-226ENST00000602029 GATA2P23769 480 aaPredicted RBP3.72□□□□□ -1.81
VRK3-226ENST00000602029 AMTP48728 403 aa3.72□□□□□ -1.81
VRK3-226ENST00000602029 RPS20P60866 119 aaKnown RBP3.72□□□□□ -1.81
VRK3-226ENST00000602029 GAGE1Q13065 139 aa3.72□□□□□ -1.81
VRK3-226ENST00000602029 MLANAQ16655 118 aa3.72□□□□□ -1.81
VRK3-226ENST00000602029 RRN3P1Q2M238 152 aa3.72□□□□□ -1.81
VRK3-226ENST00000602029 LGALS9BQ3B8N2 356 aa3.72□□□□□ -1.81
VRK3-226ENST00000602029 SAPCD1Q5SSQ6 148 aa3.72□□□□□ -1.81
VRK3-226ENST00000602029 CDPF1Q6NVV7 123 aa3.72□□□□□ -1.81
VRK3-226ENST00000602029 TMEM256Q8N2U0 113 aa3.72□□□□□ -1.81
VRK3-226ENST00000602029 MRPL53Q96EL3 112 aaKnown RBP3.72□□□□□ -1.81
VRK3-226ENST00000602029 RNF125Q96EQ8 232 aa3.72□□□□□ -1.81
VRK3-226ENST00000602029 NEU1Q99519 415 aa3.72□□□□□ -1.81
VRK3-226ENST00000602029 ALKBH7Q9BT30 221 aaPredicted RBP3.72□□□□□ -1.81
VRK3-226ENST00000602029 NRN1Q9NPD7 142 aa3.72□□□□□ -1.81
VRK3-226ENST00000602029 UQCR10Q9UDW1 63 aa3.72□□□□□ -1.81
VRK3-226ENST00000602029 FAT1Q14517 4588 aa3.71□□□□□ -1.82
VRK3-226ENST00000602029 GRIFINA4D1Z8 144 aa3.71□□□□□ -1.82
VRK3-226ENST00000602029 SMIM9A6NGZ8 99 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms