RNA–Protein interactions for RNA: ENST00000599454.5

PNKP-212, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 529 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-212ENST00000599454 COX11Q9Y6N1 276 aa14.01□□□□□ -0.17
PNKP-212ENST00000599454 UPK1BO75841 260 aa14□□□□□ -0.17
PNKP-212ENST00000599454 ARL14EPLP0DKL9 152 aa14□□□□□ -0.17
PNKP-212ENST00000599454 SMUG1Q53HV7 270 aa14□□□□□ -0.17
PNKP-212ENST00000599454 PIK3CD-AS1Q5SR53 167 aa14□□□□□ -0.17
PNKP-212ENST00000599454 ZFP2Q6ZN57 461 aa14□□□□□ -0.17
PNKP-212ENST00000599454 WFDC1Q9HC57 220 aa14□□□□□ -0.17
PNKP-212ENST00000599454 PSG8Q9UQ74 426 aa14□□□□□ -0.17
PNKP-212ENST00000599454 A8MWV9 139 aa13.99□□□□□ -0.17
PNKP-212ENST00000599454 HMGB3O15347 200 aaKnown RBP13.99□□□□□ -0.17
PNKP-212ENST00000599454 SSNA1O43805 119 aa13.99□□□□□ -0.17
PNKP-212ENST00000599454 RNASE3P12724 160 aaKnown RBP13.99□□□□□ -0.17
PNKP-212ENST00000599454 MARVELD1Q9BSK0 173 aa13.99□□□□□ -0.17
PNKP-212ENST00000599454 A0A087WWC5 75 aa13.98□□□□□ -0.17
PNKP-212ENST00000599454 GGTLC3B5MD39 225 aa13.98□□□□□ -0.17
PNKP-212ENST00000599454 STAG3L2P0CL84 134 aa13.98□□□□□ -0.17
PNKP-212ENST00000599454 STAG3L3P0CL85 134 aa13.98□□□□□ -0.17
PNKP-212ENST00000599454 LINC00694P0DN24 101 aa13.98□□□□□ -0.17
PNKP-212ENST00000599454 CDC34P49427 236 aaPredicted RBP13.98□□□□□ -0.17
PNKP-212ENST00000599454 TMEM75Q8N9X5 138 aa13.98□□□□□ -0.17
PNKP-212ENST00000599454 SUN5Q8TC36 379 aa13.98□□□□□ -0.17
PNKP-212ENST00000599454 PARLQ9H300 379 aa13.98□□□□□ -0.17
PNKP-212ENST00000599454 FLI1Q01543 452 aaPredicted RBP13.97□□□□□ -0.17
PNKP-212ENST00000599454 RMI2Q96E14 147 aa13.97□□□□□ -0.17
PNKP-212ENST00000599454 GAGE12JA6NER3 117 aa13.96□□□□□ -0.17
PNKP-212ENST00000599454 IGLV2-11P01706 119 aa13.96□□□□□ -0.17
PNKP-212ENST00000599454 SEC11BP0C7V7 166 aa13.96□□□□□ -0.17
PNKP-212ENST00000599454 FGF8P55075 233 aaPredicted RBP13.96□□□□□ -0.17
PNKP-212ENST00000599454 GAGE1Q13065 139 aa13.96□□□□□ -0.17
PNKP-212ENST00000599454 GAGE4Q13068 117 aa13.96□□□□□ -0.17
PNKP-212ENST00000599454 GAGE5Q13069 117 aa13.96□□□□□ -0.17
PNKP-212ENST00000599454 GAGE13Q4V321 117 aa13.96□□□□□ -0.17
PNKP-212ENST00000599454 SAPCD1Q5SSQ6 148 aa13.96□□□□□ -0.17
PNKP-212ENST00000599454 Q8N3U1 123 aa13.96□□□□□ -0.17
PNKP-212ENST00000599454 OR2G3Q8NGZ4 309 aa13.96□□□□□ -0.17
PNKP-212ENST00000599454 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.95□□□□□ -0.18
PNKP-212ENST00000599454 LECT2O14960 151 aa13.95□□□□□ -0.18
PNKP-212ENST00000599454 DAZ4Q86SG3 579 aaKnown RBP13.95□□□□□ -0.18
PNKP-212ENST00000599454 PRNTQ86SH4 94 aa13.95□□□□□ -0.18
PNKP-212ENST00000599454 CYB561D1Q8N8Q1 229 aa13.95□□□□□ -0.18
PNKP-212ENST00000599454 DAZ3Q9NR90 486 aaKnown RBP13.95□□□□□ -0.18
PNKP-212ENST00000599454 EPDR1Q9UM22 224 aa13.95□□□□□ -0.18
PNKP-212ENST00000599454 S100A4P26447 101 aaKnown RBP13.94□□□□□ -0.18
PNKP-212ENST00000599454 GCHFRP30047 84 aa13.94□□□□□ -0.18
PNKP-212ENST00000599454 LGALSLQ3ZCW2 172 aaPredicted RBP13.94□□□□□ -0.18
PNKP-212ENST00000599454 TMEM167BQ9NRX6 74 aa13.94□□□□□ -0.18
PNKP-212ENST00000599454 SUMO1P63165 101 aaKnown RBP13.93□□□□□ -0.18
PNKP-212ENST00000599454 Q8N976 141 aa13.93□□□□□ -0.18
PNKP-212ENST00000599454 BAALCQ8WXS3 180 aa13.93□□□□□ -0.18
PNKP-212ENST00000599454 RAB24Q969Q5 203 aa13.93□□□□□ -0.18
PNKP-212ENST00000599454 LINC00479Q96M42 142 aa13.93□□□□□ -0.18
PNKP-212ENST00000599454 PSMG3Q9BT73 122 aaPredicted RBP13.93□□□□□ -0.18
PNKP-212ENST00000599454 URGCP-MRPS24S4R325 110 aa13.93□□□□□ -0.18
PNKP-212ENST00000599454 MBP02144 154 aa13.92□□□□□ -0.18
PNKP-212ENST00000599454 IFITM3Q01628 133 aa13.92□□□□□ -0.18
PNKP-212ENST00000599454 SCXQ7RTU7 201 aa13.92□□□□□ -0.18
PNKP-212ENST00000599454 IGKV3D-20A0A0C4DH25 116 aa13.91□□□□□ -0.18
PNKP-212ENST00000599454 RBFOX3A6NFN3 312 aa13.91□□□□□ -0.18
PNKP-212ENST00000599454 CXorf1O96002 111 aa13.91□□□□□ -0.18
PNKP-212ENST00000599454 ASIPP42127 132 aa13.91□□□□□ -0.18
PNKP-212ENST00000599454 SERTAD4-AS1Q5TG53 156 aa13.91□□□□□ -0.18
PNKP-212ENST00000599454 UFSP1Q6NVU6 142 aa13.91□□□□□ -0.18
PNKP-212ENST00000599454 OR2T35Q8NGX2 323 aa13.91□□□□□ -0.18
PNKP-212ENST00000599454 IL36BQ9NZH7 164 aa13.91□□□□□ -0.18
PNKP-212ENST00000599454 RHODO00212 210 aa13.9□□□□□ -0.18
PNKP-212ENST00000599454 SERF2P84101 59 aa13.9□□□□□ -0.18
PNKP-212ENST00000599454 HSD17B11Q8NBQ5 300 aa13.9□□□□□ -0.18
PNKP-212ENST00000599454 RNF222A6NCQ9 220 aa13.89□□□□□ -0.19
PNKP-212ENST00000599454 FABP5P3A8MUU1 101 aa13.89□□□□□ -0.19
PNKP-212ENST00000599454 NIT1Q86X76 327 aa13.89□□□□□ -0.19
PNKP-212ENST00000599454 SYT8Q8NBV8 401 aa13.89□□□□□ -0.19
PNKP-212ENST00000599454 CHAC1Q9BUX1 264 aa13.89□□□□□ -0.19
PNKP-212ENST00000599454 SAMD10Q9BYL1 202 aa13.89□□□□□ -0.19
PNKP-212ENST00000599454 A0A1W2PRE2 83 aa13.88□□□□□ -0.19
PNKP-212ENST00000599454 DEFA1P59665 94 aa13.88□□□□□ -0.19
PNKP-212ENST00000599454 DEFA3P59666 94 aa13.88□□□□□ -0.19
PNKP-212ENST00000599454 C14orf178Q8N769 122 aaPredicted RBP13.88□□□□□ -0.19
PNKP-212ENST00000599454 CHCHD7Q9BUK0 85 aa13.88□□□□□ -0.19
PNKP-212ENST00000599454 ACTR3CQ9C0K3 210 aaPredicted RBP13.88□□□□□ -0.19
PNKP-212ENST00000599454 IGKV2D-24A0A075B6R9 120 aa13.87□□□□□ -0.19
PNKP-212ENST00000599454 ATP6V0CP27449 155 aa13.87□□□□□ -0.19
PNKP-212ENST00000599454 ELOBQ15370 118 aa13.87□□□□□ -0.19
PNKP-212ENST00000599454 LINC01620Q4KN68 170 aa13.87□□□□□ -0.19
PNKP-212ENST00000599454 Q9UF83 564 aa13.87□□□□□ -0.19
PNKP-212ENST00000599454 OXTP01178 125 aa13.86□□□□□ -0.19
PNKP-212ENST00000599454 DNLZQ5SXM8 178 aa13.86□□□□□ -0.19
PNKP-212ENST00000599454 JPT2Q9H910 190 aa13.86□□□□□ -0.19
PNKP-212ENST00000599454 KLK12Q9UKR0 248 aa13.86□□□□□ -0.19
PNKP-212ENST00000599454 TNFSF18Q9UNG2 199 aa13.86□□□□□ -0.19
PNKP-212ENST00000599454 ARL2-SNX15V9GYD0 113 aa13.86□□□□□ -0.19
PNKP-212ENST00000599454 B4DEV8 164 aa13.85□□□□□ -0.19
PNKP-212ENST00000599454 DMRTA1Q5VZB9 504 aa13.85□□□□□ -0.19
PNKP-212ENST00000599454 A0A087WX48 190 aa13.84□□□□□ -0.19
PNKP-212ENST00000599454 TRAV34A0A0B4J273 112 aa13.84□□□□□ -0.19
PNKP-212ENST00000599454 H3BVH4 76 aa13.84□□□□□ -0.19
PNKP-212ENST00000599454 KRTAP10-4P60372 401 aaPredicted RBP13.84□□□□□ -0.19
PNKP-212ENST00000599454 C14orf177Q52M58 125 aa13.84□□□□□ -0.19
PNKP-212ENST00000599454 KCNIP4Q6PIL6 250 aa13.84□□□□□ -0.19
PNKP-212ENST00000599454 ATRAIDQ6UW56 229 aa13.84□□□□□ -0.19
PNKP-212ENST00000599454 OR11H4Q8NGC9 324 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms