RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 DNAH17Q9UFH2 4485 aa11.12□□□□□ -0.63
TRIM28-213ENST00000598355 TRGV4A0A0C4DH28 118 aa11.12□□□□□ -0.63
TRIM28-213ENST00000598355 PGPEP1LA6NFU8 196 aa11.12□□□□□ -0.63
TRIM28-213ENST00000598355 B4DEV8 164 aa11.12□□□□□ -0.63
TRIM28-213ENST00000598355 TEX46H3BTG2 121 aa11.12□□□□□ -0.63
TRIM28-213ENST00000598355 M0R2N4 97 aa11.12□□□□□ -0.63
TRIM28-213ENST00000598355 RS1O15537 224 aa11.12□□□□□ -0.63
TRIM28-213ENST00000598355 CIDEAO60543 219 aa11.12□□□□□ -0.63
TRIM28-213ENST00000598355 GATA1P15976 413 aaPredicted RBP11.12□□□□□ -0.63
TRIM28-213ENST00000598355 CFAP126Q5VTH2 177 aa11.12□□□□□ -0.63
TRIM28-213ENST00000598355 OR4C5Q8NGB2 326 aa11.12□□□□□ -0.63
TRIM28-213ENST00000598355 NBDYA0A0U1RRE5 68 aa11.11□□□□□ -0.63
TRIM28-213ENST00000598355 ASIPP42127 132 aa11.11□□□□□ -0.63
TRIM28-213ENST00000598355 MRPL23Q16540 153 aaKnown RBP11.11□□□□□ -0.63
TRIM28-213ENST00000598355 SCRT2Q9NQ03 307 aa11.11□□□□□ -0.63
TRIM28-213ENST00000598355 C9JCJ5 164 aa11.1□□□□□ -0.63
TRIM28-213ENST00000598355 K7EQD1 137 aa11.1□□□□□ -0.63
TRIM28-213ENST00000598355 ORM1P02763 201 aa11.1□□□□□ -0.63
TRIM28-213ENST00000598355 CXCL1P09341 107 aa11.1□□□□□ -0.63
TRIM28-213ENST00000598355 RPL35P42766 123 aaKnown RBP11.1□□□□□ -0.63
TRIM28-213ENST00000598355 MEF2BQ02080 365 aaPredicted RBP11.1□□□□□ -0.63
TRIM28-213ENST00000598355 NHLRC2Q8NBF2 726 aa11.1□□□□□ -0.63
TRIM28-213ENST00000598355 DERL1Q9BUN8 251 aa11.1□□□□□ -0.63
TRIM28-213ENST00000598355 H3BVH4 76 aa11.09□□□□□ -0.63
TRIM28-213ENST00000598355 M0R036 132 aa11.09□□□□□ -0.63
TRIM28-213ENST00000598355 BCL2P10415 239 aa11.09□□□□□ -0.63
TRIM28-213ENST00000598355 S100A4P26447 101 aaKnown RBP11.09□□□□□ -0.63
TRIM28-213ENST00000598355 BAGE2Q86Y30 109 aa11.09□□□□□ -0.63
TRIM28-213ENST00000598355 LYPD6BQ8NI32 183 aa11.09□□□□□ -0.63
TRIM28-213ENST00000598355 KRTAP1-5Q9BYS1 174 aa11.09□□□□□ -0.63
TRIM28-213ENST00000598355 Q9H8V8 135 aa11.09□□□□□ -0.63
TRIM28-213ENST00000598355 A0A1B0GVY2 172 aa11.08□□□□□ -0.64
TRIM28-213ENST00000598355 TRBV6-4A0A1B0GX49 114 aa11.08□□□□□ -0.64
TRIM28-213ENST00000598355 GYPEP15421 78 aa11.08□□□□□ -0.64
TRIM28-213ENST00000598355 UFSP1Q6NVU6 142 aa11.08□□□□□ -0.64
TRIM28-213ENST00000598355 NEGR1Q7Z3B1 354 aa11.08□□□□□ -0.64
TRIM28-213ENST00000598355 SMIM12Q96EX1 92 aa11.08□□□□□ -0.64
TRIM28-213ENST00000598355 PARLQ9H300 379 aa11.08□□□□□ -0.64
TRIM28-213ENST00000598355 PKHD1P08F94 4074 aa11.08□□□□□ -0.64
TRIM28-213ENST00000598355 A0A1W2PPQ1 181 aa11.07□□□□□ -0.64
TRIM28-213ENST00000598355 A8MWV9 139 aa11.07□□□□□ -0.64
TRIM28-213ENST00000598355 PDE6DO43924 150 aa11.07□□□□□ -0.64
TRIM28-213ENST00000598355 IFNA1P01562 189 aa11.07□□□□□ -0.64
TRIM28-213ENST00000598355 IGLV2-8P01709 118 aa11.07□□□□□ -0.64
TRIM28-213ENST00000598355 ARMS2P0C7Q2 107 aa11.07□□□□□ -0.64
TRIM28-213ENST00000598355 MED14OSP0DP75 135 aa11.07□□□□□ -0.64
TRIM28-213ENST00000598355 TAGLN2P37802 199 aaKnown RBP11.07□□□□□ -0.64
TRIM28-213ENST00000598355 NKX2-5P52952 324 aaPredicted RBP11.07□□□□□ -0.64
TRIM28-213ENST00000598355 ALKAL2Q6UX46 152 aa11.07□□□□□ -0.64
TRIM28-213ENST00000598355 ZFP2Q6ZN57 461 aa11.07□□□□□ -0.64
TRIM28-213ENST00000598355 TRBV20OR9-2A0A075B6H5 130 aa11.06□□□□□ -0.64
TRIM28-213ENST00000598355 LOC100131303A0A0U1RQF7 123 aa11.06□□□□□ -0.64
TRIM28-213ENST00000598355 MGST1P10620 155 aaKnown RBP11.06□□□□□ -0.64
TRIM28-213ENST00000598355 SRIP30626 198 aa11.06□□□□□ -0.64
TRIM28-213ENST00000598355 TTC32Q5I0X7 151 aa11.06□□□□□ -0.64
TRIM28-213ENST00000598355 C1orf134Q5TEV5 83 aa11.06□□□□□ -0.64
TRIM28-213ENST00000598355 LYPD5Q6UWN5 251 aa11.06□□□□□ -0.64
TRIM28-213ENST00000598355 SLC25A29Q8N8R3 303 aa11.06□□□□□ -0.64
TRIM28-213ENST00000598355 PCNPQ8WW12 178 aaKnown RBP11.06□□□□□ -0.64
TRIM28-213ENST00000598355 VAX2Q9UIW0 290 aa11.06□□□□□ -0.64
TRIM28-213ENST00000598355 GRIFINA4D1Z8 144 aa11.05□□□□□ -0.64
TRIM28-213ENST00000598355 NXPH4O95158 308 aa11.05□□□□□ -0.64
TRIM28-213ENST00000598355 TIRAPP58753 221 aa11.05□□□□□ -0.64
TRIM28-213ENST00000598355 RHOHQ15669 191 aa11.05□□□□□ -0.64
TRIM28-213ENST00000598355 CENPWQ5EE01 88 aa11.05□□□□□ -0.64
TRIM28-213ENST00000598355 DMRTA1Q5VZB9 504 aa11.05□□□□□ -0.64
TRIM28-213ENST00000598355 SNAI2O43623 268 aa11.04□□□□□ -0.64
TRIM28-213ENST00000598355 LINC00694P0DN24 101 aa11.04□□□□□ -0.64
TRIM28-213ENST00000598355 BTF3P20290 206 aaKnown RBP11.04□□□□□ -0.64
TRIM28-213ENST00000598355 BLOC1S1P78537 153 aa11.04□□□□□ -0.64
TRIM28-213ENST00000598355 RPL19P84098 196 aaKnown RBP11.04□□□□□ -0.64
TRIM28-213ENST00000598355 SOHLH1Q5JUK2 328 aa11.04□□□□□ -0.64
TRIM28-213ENST00000598355 SH2D6Q7Z4S9 175 aa11.04□□□□□ -0.64
TRIM28-213ENST00000598355 C6orf223Q8N319 242 aa11.04□□□□□ -0.64
TRIM28-213ENST00000598355 BOLA1Q9Y3E2 137 aa11.04□□□□□ -0.64
TRIM28-213ENST00000598355 TMSB15BA0A087X1C1 80 aa11.03□□□□□ -0.64
TRIM28-213ENST00000598355 C19orf71A6NCJ1 209 aa11.03□□□□□ -0.64
TRIM28-213ENST00000598355 PRSS29PA6NIE9 313 aa11.03□□□□□ -0.64
TRIM28-213ENST00000598355 SIVA1O15304 175 aa11.03□□□□□ -0.64
TRIM28-213ENST00000598355 SYT8Q8NBV8 401 aa11.03□□□□□ -0.64
TRIM28-213ENST00000598355 SSBP4Q9BWG4 385 aaPredicted RBP11.03□□□□□ -0.64
TRIM28-213ENST00000598355 JPT2Q9H910 190 aa11.03□□□□□ -0.64
TRIM28-213ENST00000598355 PKD1P98161 4303 aa11.03□□□□□ -0.64
TRIM28-213ENST00000598355 RHODO00212 210 aa11.02□□□□□ -0.65
TRIM28-213ENST00000598355 OR5AL1P0C617 328 aa11.02□□□□□ -0.65
TRIM28-213ENST00000598355 Q6ZSN1 163 aa11.02□□□□□ -0.65
TRIM28-213ENST00000598355 ZFP82Q8N141 532 aa11.02□□□□□ -0.65
TRIM28-213ENST00000598355 SFRP2Q96HF1 295 aa11.02□□□□□ -0.65
TRIM28-213ENST00000598355 PRADC1Q9BSG0 188 aa11.02□□□□□ -0.65
TRIM28-213ENST00000598355 SAMD10Q9BYL1 202 aa11.02□□□□□ -0.65
TRIM28-213ENST00000598355 PHLDA3Q9Y5J5 127 aa11.02□□□□□ -0.65
TRIM28-213ENST00000598355 IGHV3-73A0A0B4J1V6 119 aa11.01□□□□□ -0.65
TRIM28-213ENST00000598355 GNG4P50150 75 aa11.01□□□□□ -0.65
TRIM28-213ENST00000598355 PRR27Q6MZM9 219 aa11.01□□□□□ -0.65
TRIM28-213ENST00000598355 RAB19A4D1S5 217 aa11□□□□□ -0.65
TRIM28-213ENST00000598355 TMEM250H0YL14 139 aa11□□□□□ -0.65
TRIM28-213ENST00000598355 NDUFS6O75380 124 aaKnown RBP11□□□□□ -0.65
TRIM28-213ENST00000598355 CRYGDP07320 174 aa11□□□□□ -0.65
TRIM28-213ENST00000598355 OR10AG1Q8NH19 301 aa11□□□□□ -0.65
TRIM28-213ENST00000598355 MED9Q9NWA0 146 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms