RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 NUP37Q8NFH4 326 aa3.19□□□□□ -1.9
LIG3-211ENST00000588713 OR10W1Q8NGF6 305 aa3.19□□□□□ -1.9
LIG3-211ENST00000588713 NPIPB3Q92617 1050 aa3.19□□□□□ -1.9
LIG3-211ENST00000588713 RAB37Q96AX2 223 aa3.19□□□□□ -1.9
LIG3-211ENST00000588713 ZC2HC1AQ96GY0 325 aa3.19□□□□□ -1.9
LIG3-211ENST00000588713 ZNF479Q96JC4 524 aa3.19□□□□□ -1.9
LIG3-211ENST00000588713 RITA1Q96K30 269 aa3.19□□□□□ -1.9
LIG3-211ENST00000588713 PRELID3AQ96N28 172 aa3.19□□□□□ -1.9
LIG3-211ENST00000588713 C1QTNF4Q9BXJ3 329 aa3.19□□□□□ -1.9
LIG3-211ENST00000588713 MRPL20Q9BYC9 149 aaKnown RBP3.19□□□□□ -1.9
LIG3-211ENST00000588713 GTSF1LQ9H1H1 148 aa3.19□□□□□ -1.9
LIG3-211ENST00000588713 MAP1LC3AQ9H492 121 aa3.19□□□□□ -1.9
LIG3-211ENST00000588713 MRPL16Q9NX20 251 aaKnown RBP3.19□□□□□ -1.9
LIG3-211ENST00000588713 FZR1Q9UM11 496 aa3.19□□□□□ -1.9
LIG3-211ENST00000588713 HIGD1AQ9Y241 93 aa3.19□□□□□ -1.9
LIG3-211ENST00000588713 LINC00312Q9Y6C7 94 aa3.19□□□□□ -1.9
LIG3-211ENST00000588713 IGHV3-64DA0A0J9YX35 117 aa3.18□□□□□ -1.9
LIG3-211ENST00000588713 A0A1W2PPI3 338 aa3.18□□□□□ -1.9
LIG3-211ENST00000588713 CGB1A6NKQ9 187 aa3.18□□□□□ -1.9
LIG3-211ENST00000588713 ZNF785A8K8V0 405 aa3.18□□□□□ -1.9
LIG3-211ENST00000588713 PRSS47A8MTI9 375 aa3.18□□□□□ -1.9
LIG3-211ENST00000588713 D6R8Y8 96 aa3.18□□□□□ -1.9
LIG3-211ENST00000588713 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP3.18□□□□□ -1.9
LIG3-211ENST00000588713 DPM2O94777 84 aa3.18□□□□□ -1.9
LIG3-211ENST00000588713 IGHV3-13P01766 116 aa3.18□□□□□ -1.9
LIG3-211ENST00000588713 IGKCP01834 107 aa3.18□□□□□ -1.9
LIG3-211ENST00000588713 PRB4P10163 310 aaPredicted RBP3.18□□□□□ -1.9
LIG3-211ENST00000588713 CD24P25063 80 aa3.18□□□□□ -1.9
LIG3-211ENST00000588713 MC5RP33032 325 aa3.18□□□□□ -1.9
LIG3-211ENST00000588713 IFI27P40305 119 aaPredicted RBP3.18□□□□□ -1.9
LIG3-211ENST00000588713 ZNF138P52744 262 aa3.18□□□□□ -1.9
LIG3-211ENST00000588713 FOXE3Q13461 319 aa3.18□□□□□ -1.9
LIG3-211ENST00000588713 PDE6HQ13956 83 aa3.18□□□□□ -1.9
LIG3-211ENST00000588713 RRN3P1Q2M238 152 aa3.18□□□□□ -1.9
LIG3-211ENST00000588713 C5orf64Q2M2E5 130 aa3.18□□□□□ -1.9
LIG3-211ENST00000588713 ASPHD1Q5U4P2 390 aa3.18□□□□□ -1.9
LIG3-211ENST00000588713 ZNF562Q6V9R5 426 aa3.18□□□□□ -1.9
LIG3-211ENST00000588713 SIGLEC15Q6ZMC9 328 aa3.18□□□□□ -1.9
LIG3-211ENST00000588713 GOLT1AQ6ZVE7 132 aa3.18□□□□□ -1.9
LIG3-211ENST00000588713 PRNTQ86SH4 94 aa3.18□□□□□ -1.9
LIG3-211ENST00000588713 ZNF575Q86XF7 245 aa3.18□□□□□ -1.9
LIG3-211ENST00000588713 LINC00311Q8N616 119 aa3.18□□□□□ -1.9
LIG3-211ENST00000588713 OR4C13Q8NGP0 309 aa3.18□□□□□ -1.9
LIG3-211ENST00000588713 SRSF12Q8WXF0 261 aaKnown RBP3.18□□□□□ -1.9
LIG3-211ENST00000588713 AJUBAQ96IF1 538 aa3.18□□□□□ -1.9
LIG3-211ENST00000588713 C18orf15Q96N68 181 aa3.18□□□□□ -1.9
LIG3-211ENST00000588713 GAFA1Q96PS6 74 aa3.18□□□□□ -1.9
LIG3-211ENST00000588713 NAA38Q9BRA0 125 aaKnown RBP3.18□□□□□ -1.9
LIG3-211ENST00000588713 SRSF8Q9BRL6 282 aaKnown RBP3.18□□□□□ -1.9
LIG3-211ENST00000588713 MCRIP2Q9BUT9 160 aaKnown RBP3.18□□□□□ -1.9
LIG3-211ENST00000588713 CNFNQ9BYD5 112 aa3.18□□□□□ -1.9
LIG3-211ENST00000588713 HEATR1Q9H583 2144 aaKnown RBP3.18□□□□□ -1.9
LIG3-211ENST00000588713 NXT2Q9NPJ8 142 aaKnown RBP3.18□□□□□ -1.9
LIG3-211ENST00000588713 PRO0461Q9UI25 63 aa3.18□□□□□ -1.9
LIG3-211ENST00000588713 VPREB3Q9UKI3 123 aa3.18□□□□□ -1.9
LIG3-211ENST00000588713 SMAD5-AS1Q9Y6J3 95 aa3.18□□□□□ -1.9
LIG3-211ENST00000588713 HMCN2Q8NDA2 5059 aa3.18□□□□□ -1.9
LIG3-211ENST00000588713 IGLV3-9A0A075B6K5 115 aa3.17□□□□□ -1.9
LIG3-211ENST00000588713 TRBV19A0A075B6N1 114 aa3.17□□□□□ -1.9
LIG3-211ENST00000588713 TRBV25-1A0A075B6N4 114 aa3.17□□□□□ -1.9
LIG3-211ENST00000588713 IGHV3OR15-7A0A075B7D8 119 aa3.17□□□□□ -1.9
LIG3-211ENST00000588713 A0A1B0GVY2 172 aa3.17□□□□□ -1.9
LIG3-211ENST00000588713 NPIPB5A8MRT5 1133 aa3.17□□□□□ -1.9
LIG3-211ENST00000588713 OR11H12B2RN74 326 aa3.17□□□□□ -1.9
LIG3-211ENST00000588713 IGLL5B9A064 214 aa3.17□□□□□ -1.9
LIG3-211ENST00000588713 H3BMG7 143 aa3.17□□□□□ -1.9
LIG3-211ENST00000588713 K7ERJ3 54 aa3.17□□□□□ -1.9
LIG3-211ENST00000588713 SNAI2O43623 268 aa3.17□□□□□ -1.9
LIG3-211ENST00000588713 TSPAN13O95857 204 aa3.17□□□□□ -1.9
LIG3-211ENST00000588713 IGLV2-23P01705 113 aa3.17□□□□□ -1.9
LIG3-211ENST00000588713 IGLC6P0CF74 106 aa3.17□□□□□ -1.9
LIG3-211ENST00000588713 ORM2P19652 201 aa3.17□□□□□ -1.9
LIG3-211ENST00000588713 PLNP26678 52 aa3.17□□□□□ -1.9
LIG3-211ENST00000588713 FCER1GP30273 86 aa3.17□□□□□ -1.9
LIG3-211ENST00000588713 RPL27AP46776 148 aaKnown RBP3.17□□□□□ -1.9
LIG3-211ENST00000588713 CRYBA4P53673 196 aa3.17□□□□□ -1.9
LIG3-211ENST00000588713 TCTAP57738 103 aa3.17□□□□□ -1.9
LIG3-211ENST00000588713 HOXA4Q00056 320 aaPredicted RBP3.17□□□□□ -1.9
LIG3-211ENST00000588713 MRPL51Q4U2R6 128 aaKnown RBP3.17□□□□□ -1.9
LIG3-211ENST00000588713 GAGE13Q4V321 117 aa3.17□□□□□ -1.9
LIG3-211ENST00000588713 TEX36Q5VZQ5 186 aa3.17□□□□□ -1.9
LIG3-211ENST00000588713 ZNF788Q6ZQV5 615 aa3.17□□□□□ -1.9
LIG3-211ENST00000588713 MOGAT3Q86VF5 341 aa3.17□□□□□ -1.9
LIG3-211ENST00000588713 PCP2Q8IVA1 136 aa3.17□□□□□ -1.9
LIG3-211ENST00000588713 ZNRF1Q8ND25 227 aa3.17□□□□□ -1.9
LIG3-211ENST00000588713 OR11H1Q8NG94 326 aa3.17□□□□□ -1.9
LIG3-211ENST00000588713 OR11H2Q8NH07 326 aa3.17□□□□□ -1.9
LIG3-211ENST00000588713 IL17DQ8TAD2 202 aa3.17□□□□□ -1.9
LIG3-211ENST00000588713 CCL17Q92583 94 aa3.17□□□□□ -1.9
LIG3-211ENST00000588713 DLX4Q92988 240 aaPredicted RBP3.17□□□□□ -1.9
LIG3-211ENST00000588713 LEAP2Q969E1 77 aa3.17□□□□□ -1.9
LIG3-211ENST00000588713 FLYWCH2Q96CP2 140 aaKnown RBP3.17□□□□□ -1.9
LIG3-211ENST00000588713 SHANK2-AS3Q9BTD1 123 aa3.17□□□□□ -1.9
LIG3-211ENST00000588713 GEMIN7Q9H840 131 aaKnown RBP3.17□□□□□ -1.9
LIG3-211ENST00000588713 NHP2Q9NX24 153 aaKnown RBP3.17□□□□□ -1.9
LIG3-211ENST00000588713 MRPL36Q9P0J6 103 aaKnown RBP3.17□□□□□ -1.9
LIG3-211ENST00000588713 RNF7Q9UBF6 113 aa3.17□□□□□ -1.9
LIG3-211ENST00000588713 PSG8Q9UQ74 426 aa3.17□□□□□ -1.9
LIG3-211ENST00000588713 CYSLTR1Q9Y271 337 aa3.17□□□□□ -1.9
LIG3-211ENST00000588713 TIMM8BQ9Y5J9 83 aaPredicted RBP3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 357.2 ms