RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 SMIM2Q9BVW6 85 aa7.42□□□□□ -1.22
CCDC40-212ENST00000574799 GRNP28799 593 aaKnown RBP7.41□□□□□ -1.22
CCDC40-212ENST00000574799 TEX36Q5VZQ5 186 aa7.41□□□□□ -1.22
CCDC40-212ENST00000574799 ZNF256Q9Y2P7 627 aaPredicted RBP7.41□□□□□ -1.22
CCDC40-212ENST00000574799 LOXP28300 417 aaPredicted RBP7.41□□□□□ -1.22
CCDC40-212ENST00000574799 ASIPP42127 132 aa7.41□□□□□ -1.22
CCDC40-212ENST00000574799 BSPH1Q075Z2 132 aa7.41□□□□□ -1.22
CCDC40-212ENST00000574799 NDUFA11Q86Y39 141 aa7.41□□□□□ -1.22
CCDC40-212ENST00000574799 IGHV1-3A0A0C4DH29 117 aa7.41□□□□□ -1.22
CCDC40-212ENST00000574799 I3L2K1 104 aa7.41□□□□□ -1.22
CCDC40-212ENST00000574799 IGHV1-8P0DP01 117 aa7.41□□□□□ -1.22
CCDC40-212ENST00000574799 GFRALQ6UXV0 394 aa7.41□□□□□ -1.22
CCDC40-212ENST00000574799 C10orf126Q8N4M7 172 aa7.41□□□□□ -1.22
CCDC40-212ENST00000574799 C14orf178Q8N769 122 aaPredicted RBP7.41□□□□□ -1.22
CCDC40-212ENST00000574799 CFHR4Q92496 578 aa7.41□□□□□ -1.22
CCDC40-212ENST00000574799 DOPEY2Q9Y3R5 2298 aa7.41□□□□□ -1.22
CCDC40-212ENST00000574799 FLNCQ14315 2725 aa7.4□□□□□ -1.22
CCDC40-212ENST00000574799 IGLC6P0CF74 106 aa7.4□□□□□ -1.22
CCDC40-212ENST00000574799 SUMO2P61956 95 aaKnown RBP7.4□□□□□ -1.22
CCDC40-212ENST00000574799 C2orf82Q6UX34 121 aa7.4□□□□□ -1.22
CCDC40-212ENST00000574799 MSRB2Q9Y3D2 182 aa7.4□□□□□ -1.22
CCDC40-212ENST00000574799 ABCA4P78363 2273 aa7.4□□□□□ -1.22
CCDC40-212ENST00000574799 COX6CP09669 75 aa7.4□□□□□ -1.22
CCDC40-212ENST00000574799 DYNAPQ8N1N2 210 aa7.4□□□□□ -1.22
CCDC40-212ENST00000574799 OR10J6PQ8NGY7 276 aa7.4□□□□□ -1.22
CCDC40-212ENST00000574799 IGSF10Q6WRI0 2623 aa7.4□□□□□ -1.23
CCDC40-212ENST00000574799 IGKV3-7A0A075B6H7 116 aa7.4□□□□□ -1.23
CCDC40-212ENST00000574799 RHODO00212 210 aa7.4□□□□□ -1.23
CCDC40-212ENST00000574799 YAE1D1Q9NRH1 226 aa7.4□□□□□ -1.23
CCDC40-212ENST00000574799 K7EIM0 57 aa7.39□□□□□ -1.23
CCDC40-212ENST00000574799 UBTD1Q9HAC8 227 aa7.39□□□□□ -1.23
CCDC40-212ENST00000574799 ATXN8Q156A1 80 aa7.39□□□□□ -1.23
CCDC40-212ENST00000574799 TMEM190Q8WZ59 177 aa7.39□□□□□ -1.23
CCDC40-212ENST00000574799 C17orf100A8MU93 164 aa7.39□□□□□ -1.23
CCDC40-212ENST00000574799 H3BMM0 161 aa7.39□□□□□ -1.23
CCDC40-212ENST00000574799 TIMM23O14925 209 aa7.39□□□□□ -1.23
CCDC40-212ENST00000574799 HOXB4P17483 251 aaPredicted RBP7.39□□□□□ -1.23
CCDC40-212ENST00000574799 UBE2WQ96B02 151 aa7.39□□□□□ -1.23
CCDC40-212ENST00000574799 FAM110AQ9BQ89 295 aa7.39□□□□□ -1.23
CCDC40-212ENST00000574799 TMEM95Q3KNT9 176 aa7.38□□□□□ -1.23
CCDC40-212ENST00000574799 CTSZQ9UBR2 303 aa7.38□□□□□ -1.23
CCDC40-212ENST00000574799 TEX22C9J3V5 150 aa7.38□□□□□ -1.23
CCDC40-212ENST00000574799 E7EQL1 145 aa7.38□□□□□ -1.23
CCDC40-212ENST00000574799 PAX8Q06710 450 aa7.38□□□□□ -1.23
CCDC40-212ENST00000574799 PAPPA-AS1Q5QFB9 102 aa7.38□□□□□ -1.23
CCDC40-212ENST00000574799 Q6ZQT7 251 aa7.38□□□□□ -1.23
CCDC40-212ENST00000574799 Q8N1Y9 231 aa7.38□□□□□ -1.23
CCDC40-212ENST00000574799 AJUBAQ96IF1 538 aa7.38□□□□□ -1.23
CCDC40-212ENST00000574799 SPG11Q96JI7 2443 aa7.38□□□□□ -1.23
CCDC40-212ENST00000574799 A4D1N5 150 aa7.38□□□□□ -1.23
CCDC40-212ENST00000574799 PRAC2D3DTV9 90 aa7.38□□□□□ -1.23
CCDC40-212ENST00000574799 CRLF1O75462 422 aa7.38□□□□□ -1.23
CCDC40-212ENST00000574799 ECSCRQ19T08 205 aa7.38□□□□□ -1.23
CCDC40-212ENST00000574799 MRGPRG-AS1Q2M3A8 158 aa7.38□□□□□ -1.23
CCDC40-212ENST00000574799 IGFBPL1Q8WX77 278 aa7.38□□□□□ -1.23
CCDC40-212ENST00000574799 RPL39LQ96EH5 51 aaKnown RBP7.38□□□□□ -1.23
CCDC40-212ENST00000574799 TEX49A0A1B0GTD5 131 aa7.37□□□□□ -1.23
CCDC40-212ENST00000574799 C16orf92Q96LL3 132 aa7.37□□□□□ -1.23
CCDC40-212ENST00000574799 ZFYVE26Q68DK2 2539 aa7.37□□□□□ -1.23
CCDC40-212ENST00000574799 CFC1BP0CG36 223 aa7.37□□□□□ -1.23
CCDC40-212ENST00000574799 CFC1P0CG37 223 aa7.37□□□□□ -1.23
CCDC40-212ENST00000574799 C9orf153Q5TBE3 101 aa7.37□□□□□ -1.23
CCDC40-212ENST00000574799 TRAV12-1A0A0B4J245 112 aa7.37□□□□□ -1.23
CCDC40-212ENST00000574799 BAALCQ8WXS3 180 aa7.37□□□□□ -1.23
CCDC40-212ENST00000574799 SLC50A1Q9BRV3 221 aa7.37□□□□□ -1.23
CCDC40-212ENST00000574799 TP53TG1Q9Y2A0 90 aa7.37□□□□□ -1.23
CCDC40-212ENST00000574799 NBR2O15453 112 aa7.36□□□□□ -1.23
CCDC40-212ENST00000574799 NPC2P61916 151 aa7.36□□□□□ -1.23
CCDC40-212ENST00000574799 FAM74A4Q5TZK3 123 aa7.36□□□□□ -1.23
CCDC40-212ENST00000574799 LINC00311Q8N616 119 aa7.36□□□□□ -1.23
CCDC40-212ENST00000574799 CHCHD5Q9BSY4 110 aa7.36□□□□□ -1.23
CCDC40-212ENST00000574799 C11orf86A6NJI1 115 aa7.36□□□□□ -1.23
CCDC40-212ENST00000574799 ADORA2A-AS1P86434 159 aa7.36□□□□□ -1.23
CCDC40-212ENST00000574799 ACACBO00763 2458 aa7.36□□□□□ -1.23
CCDC40-212ENST00000574799 TMEM178BH3BS89 294 aa7.36□□□□□ -1.23
CCDC40-212ENST00000574799 UBE2D1P51668 147 aa7.36□□□□□ -1.23
CCDC40-212ENST00000574799 CRIP2P52943 208 aaPredicted RBP7.36□□□□□ -1.23
CCDC40-212ENST00000574799 UBE2D3P61077 147 aa7.36□□□□□ -1.23
CCDC40-212ENST00000574799 UBE2D2P62837 147 aa7.36□□□□□ -1.23
CCDC40-212ENST00000574799 LINC01620Q4KN68 170 aa7.36□□□□□ -1.23
CCDC40-212ENST00000574799 FAM208BQ5VWN6 2430 aa7.35□□□□□ -1.23
CCDC40-212ENST00000574799 BUB1B-PAK6H3BSN5 160 aa7.35□□□□□ -1.23
CCDC40-212ENST00000574799 DUSP14O95147 198 aaKnown RBP7.35□□□□□ -1.23
CCDC40-212ENST00000574799 ID1P41134 155 aa7.35□□□□□ -1.23
CCDC40-212ENST00000574799 MAP1AP78559 2803 aaPredicted RBP7.35□□□□□ -1.23
CCDC40-212ENST00000574799 IGKV3D-20A0A0C4DH25 116 aa7.35□□□□□ -1.23
CCDC40-212ENST00000574799 LYNX1G3V0Z9 82 aa7.35□□□□□ -1.23
CCDC40-212ENST00000574799 J3QQQ9 107 aa7.35□□□□□ -1.23
CCDC40-212ENST00000574799 OVOL3O00110 214 aa7.35□□□□□ -1.23
CCDC40-212ENST00000574799 LYNX1P0DP58 116 aa7.35□□□□□ -1.23
CCDC40-212ENST00000574799 AGPAT4-IT1Q9H0P7 198 aa7.35□□□□□ -1.23
CCDC40-212ENST00000574799 TRAV12-3A0A0B4J271 114 aa7.35□□□□□ -1.23
CCDC40-212ENST00000574799 A0A0J9YY99 117 aa7.35□□□□□ -1.23
CCDC40-212ENST00000574799 SRD5A1P18405 259 aa7.35□□□□□ -1.23
CCDC40-212ENST00000574799 DPH3P1Q9H4G8 78 aa7.35□□□□□ -1.23
CCDC40-212ENST00000574799 ARHGAP32A7KAX9 2087 aa7.34□□□□□ -1.23
CCDC40-212ENST00000574799 PMVKQ15126 192 aa7.34□□□□□ -1.23
CCDC40-212ENST00000574799 MRPL23Q16540 153 aaKnown RBP7.34□□□□□ -1.23
CCDC40-212ENST00000574799 Q6ZS46 218 aa7.34□□□□□ -1.23
CCDC40-212ENST00000574799 NEXN-AS1Q8NBZ9 246 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms