RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 PRR27Q6MZM9 219 aa14.59□□□□□ -0.07
VPS53-210ENST00000571456 C9orf85Q96MD7 179 aa14.59□□□□□ -0.07
VPS53-210ENST00000571456 TRGV2A0A075B6R0 118 aa14.58□□□□□ -0.08
VPS53-210ENST00000571456 XKRY2A2RUG3 117 aa14.58□□□□□ -0.08
VPS53-210ENST00000571456 Q6ZTI0 123 aa14.58□□□□□ -0.08
VPS53-210ENST00000571456 GAGE12BA1L429 117 aa14.57□□□□□ -0.08
VPS53-210ENST00000571456 C19orf71A6NCJ1 209 aa14.57□□□□□ -0.08
VPS53-210ENST00000571456 M0R036 132 aa14.57□□□□□ -0.08
VPS53-210ENST00000571456 CIDEAO60543 219 aa14.57□□□□□ -0.08
VPS53-210ENST00000571456 GAGE7O76087 117 aa14.57□□□□□ -0.08
VPS53-210ENST00000571456 P01737 135 aa14.57□□□□□ -0.08
VPS53-210ENST00000571456 GAGE12FP0CL80 117 aa14.57□□□□□ -0.08
VPS53-210ENST00000571456 GAGE12GP0CL81 117 aa14.57□□□□□ -0.08
VPS53-210ENST00000571456 GAGE12IP0CL82 117 aa14.57□□□□□ -0.08
VPS53-210ENST00000571456 OCC1Q8TAD7 63 aa14.57□□□□□ -0.08
VPS53-210ENST00000571456 RNASE3P12724 160 aaKnown RBP14.56□□□□□ -0.08
VPS53-210ENST00000571456 SOHLH1Q5JUK2 328 aa14.55□□□□□ -0.08
VPS53-210ENST00000571456 UQCC3Q6UW78 93 aa14.55□□□□□ -0.08
VPS53-210ENST00000571456 FAM231DQ6ZW35 169 aa14.55□□□□□ -0.08
VPS53-210ENST00000571456 PGPEP1LA6NFU8 196 aa14.54□□□□□ -0.08
VPS53-210ENST00000571456 TMEM241Q24JQ0 296 aa14.54□□□□□ -0.08
VPS53-210ENST00000571456 SYT8Q8NBV8 401 aa14.54□□□□□ -0.08
VPS53-210ENST00000571456 SLAQ13239 276 aa14.53□□□□□ -0.08
VPS53-210ENST00000571456 ZNF876PQ49A33 203 aa14.53□□□□□ -0.08
VPS53-210ENST00000571456 LINC01551Q86U37 167 aa14.53□□□□□ -0.08
VPS53-210ENST00000571456 SCRT2Q9NQ03 307 aa14.53□□□□□ -0.08
VPS53-210ENST00000571456 MRPL16Q9NX20 251 aaKnown RBP14.53□□□□□ -0.08
VPS53-210ENST00000571456 NAT8Q9UHE5 227 aa14.53□□□□□ -0.08
VPS53-210ENST00000571456 ARMS2P0C7Q2 107 aa14.52□□□□□ -0.09
VPS53-210ENST00000571456 SRSF3P84103 164 aaKnown RBP14.52□□□□□ -0.09
VPS53-210ENST00000571456 OR2D3Q8NGH3 330 aa14.52□□□□□ -0.09
VPS53-210ENST00000571456 PHLDA3Q9Y5J5 127 aa14.52□□□□□ -0.09
VPS53-210ENST00000571456 TMSB15BA0A087X1C1 80 aa14.51□□□□□ -0.09
VPS53-210ENST00000571456 TRAV4A0A0B4J268 109 aa14.51□□□□□ -0.09
VPS53-210ENST00000571456 C9JQL5 133 aa14.51□□□□□ -0.09
VPS53-210ENST00000571456 H3BVH4 76 aa14.51□□□□□ -0.09
VPS53-210ENST00000571456 K7EN84 100 aa14.51□□□□□ -0.09
VPS53-210ENST00000571456 OR5AL1P0C617 328 aa14.51□□□□□ -0.09
VPS53-210ENST00000571456 NUDT10Q8NFP7 164 aa14.51□□□□□ -0.09
VPS53-210ENST00000571456 NUDT11Q96G61 164 aa14.51□□□□□ -0.09
VPS53-210ENST00000571456 SSBP4Q9BWG4 385 aaPredicted RBP14.51□□□□□ -0.09
VPS53-210ENST00000571456 A0A1W2PPQ1 181 aa14.5□□□□□ -0.09
VPS53-210ENST00000571456 GRIFINA4D1Z8 144 aa14.5□□□□□ -0.09
VPS53-210ENST00000571456 A8MWV9 139 aa14.5□□□□□ -0.09
VPS53-210ENST00000571456 F5H768 121 aa14.5□□□□□ -0.09
VPS53-210ENST00000571456 H3BNG1 76 aa14.5□□□□□ -0.09
VPS53-210ENST00000571456 SNAI2O43623 268 aa14.5□□□□□ -0.09
VPS53-210ENST00000571456 HTN3P15516 51 aa14.5□□□□□ -0.09
VPS53-210ENST00000571456 CT83Q5H943 113 aa14.5□□□□□ -0.09
VPS53-210ENST00000571456 ZFP82Q8N141 532 aa14.5□□□□□ -0.09
VPS53-210ENST00000571456 C15orf53Q8NAA6 179 aa14.5□□□□□ -0.09
VPS53-210ENST00000571456 RPP21Q9H633 154 aaKnown RBP14.5□□□□□ -0.09
VPS53-210ENST00000571456 F2Z2F3 143 aa14.49□□□□□ -0.09
VPS53-210ENST00000571456 ERVFC1-1P60608 527 aa14.49□□□□□ -0.09
VPS53-210ENST00000571456 ZNF575Q86XF7 245 aa14.49□□□□□ -0.09
VPS53-210ENST00000571456 OR4C5Q8NGB2 326 aa14.49□□□□□ -0.09
VPS53-210ENST00000571456 OSTCQ9NRP0 149 aa14.49□□□□□ -0.09
VPS53-210ENST00000571456 PKHD1P08F94 4074 aa14.48□□□□□ -0.09
VPS53-210ENST00000571456 IGHV4-4A0A075B6R2 117 aa14.48□□□□□ -0.09
VPS53-210ENST00000571456 IGLL5B9A064 214 aa14.48□□□□□ -0.09
VPS53-210ENST00000571456 RPL19P84098 196 aaKnown RBP14.48□□□□□ -0.09
VPS53-210ENST00000571456 C15orf54Q8N8G6 183 aa14.48□□□□□ -0.09
VPS53-210ENST00000571456 A8MWL6 223 aa14.47□□□□□ -0.09
VPS53-210ENST00000571456 GATCO43716 136 aaKnown RBP14.47□□□□□ -0.09
VPS53-210ENST00000571456 SFTA3P0C7M3 94 aa14.47□□□□□ -0.09
VPS53-210ENST00000571456 PNRC1Q12796 327 aaPredicted RBP14.47□□□□□ -0.09
VPS53-210ENST00000571456 LINC00862A6NCI5 91 aa14.46□□□□□ -0.09
VPS53-210ENST00000571456 RS1O15537 224 aa14.46□□□□□ -0.09
VPS53-210ENST00000571456 NXPH4O95158 308 aa14.46□□□□□ -0.09
VPS53-210ENST00000571456 IGLC6P0CF74 106 aa14.46□□□□□ -0.09
VPS53-210ENST00000571456 RPL23P62829 140 aaKnown RBP14.46□□□□□ -0.09
VPS53-210ENST00000571456 ZFP2Q6ZN57 461 aa14.46□□□□□ -0.09
VPS53-210ENST00000571456 FER1L6-AS1Q8NA97 138 aa14.46□□□□□ -0.09
VPS53-210ENST00000571456 RNASE7Q9H1E1 156 aaKnown RBP14.46□□□□□ -0.09
VPS53-210ENST00000571456 PRO0255Q9UI72 69 aa14.46□□□□□ -0.09
VPS53-210ENST00000571456 FAM231BA6NCW3 169 aa14.45□□□□□ -0.1
VPS53-210ENST00000571456 RHODO00212 210 aa14.45□□□□□ -0.1
VPS53-210ENST00000571456 CACNG7P62955 275 aa14.45□□□□□ -0.1
VPS53-210ENST00000571456 WDR73Q6P4I2 378 aa14.45□□□□□ -0.1
VPS53-210ENST00000571456 ISOC2Q96AB3 205 aa14.45□□□□□ -0.1
VPS53-210ENST00000571456 TRGV4A0A0C4DH28 118 aa14.44□□□□□ -0.1
VPS53-210ENST00000571456 ADIRFQ15847 76 aa14.44□□□□□ -0.1
VPS53-210ENST00000571456 SPANXN1Q5VSR9 72 aa14.44□□□□□ -0.1
VPS53-210ENST00000571456 CFAP126Q5VTH2 177 aa14.44□□□□□ -0.1
VPS53-210ENST00000571456 TMEM88Q6PEY1 159 aa14.44□□□□□ -0.1
VPS53-210ENST00000571456 GFRA4Q9GZZ7 299 aa14.44□□□□□ -0.1
VPS53-210ENST00000571456 APLNQ9ULZ1 77 aa14.44□□□□□ -0.1
VPS53-210ENST00000571456 NACAE9PAV3 2078 aa14.44□□□□□ -0.1
VPS53-210ENST00000571456 VPS13DQ5THJ4 4388 aa14.43□□□□□ -0.1
VPS53-210ENST00000571456 HOXA5P20719 270 aa14.43□□□□□ -0.1
VPS53-210ENST00000571456 FHL2Q14192 279 aa14.43□□□□□ -0.1
VPS53-210ENST00000571456 DMRTA1Q5VZB9 504 aa14.43□□□□□ -0.1
VPS53-210ENST00000571456 POM121L12Q8N7R1 296 aa14.43□□□□□ -0.1
VPS53-210ENST00000571456 SFRP2Q96HF1 295 aa14.43□□□□□ -0.1
VPS53-210ENST00000571456 M0R381 172 aa14.42□□□□□ -0.1
VPS53-210ENST00000571456 CTRLP40313 264 aa14.42□□□□□ -0.1
VPS53-210ENST00000571456 COMMD7Q86VX2 200 aa14.42□□□□□ -0.1
VPS53-210ENST00000571456 ZNF479Q96JC4 524 aa14.42□□□□□ -0.1
VPS53-210ENST00000571456 HHLA3Q9XRX5 114 aa14.42□□□□□ -0.1
VPS53-210ENST00000571456 TRAV26-1A0A087WT03 109 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 91.2 ms