RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 TCRAP04437 139 aa7.38□□□□□ -1.23
VPS53-207ENST00000570510 ASIPP42127 132 aa7.38□□□□□ -1.23
VPS53-207ENST00000570510 TCL1AP56279 114 aa7.38□□□□□ -1.23
VPS53-207ENST00000570510 CYB561D1Q8N8Q1 229 aa7.38□□□□□ -1.23
VPS53-207ENST00000570510 MBD3L1Q8WWY6 194 aa7.38□□□□□ -1.23
VPS53-207ENST00000570510 KCNS1Q96KK3 526 aa7.38□□□□□ -1.23
VPS53-207ENST00000570510 SPXQ9BT56 116 aa7.38□□□□□ -1.23
VPS53-207ENST00000570510 TM2D2Q9BX73 214 aa7.38□□□□□ -1.23
VPS53-207ENST00000570510 EPDR1Q9UM22 224 aa7.38□□□□□ -1.23
VPS53-207ENST00000570510 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.37□□□□□ -1.23
VPS53-207ENST00000570510 TRGV11A0A075B6L2 103 aa7.37□□□□□ -1.23
VPS53-207ENST00000570510 TRBV6-1A0A0K0K1D8 114 aa7.37□□□□□ -1.23
VPS53-207ENST00000570510 TEX46H3BTG2 121 aa7.37□□□□□ -1.23
VPS53-207ENST00000570510 K7EQD1 137 aa7.37□□□□□ -1.23
VPS53-207ENST00000570510 CIDEAO60543 219 aa7.37□□□□□ -1.23
VPS53-207ENST00000570510 ORM1P02763 201 aa7.37□□□□□ -1.23
VPS53-207ENST00000570510 S100A9P06702 114 aaKnown RBP7.37□□□□□ -1.23
VPS53-207ENST00000570510 RNASE4P34096 147 aaKnown RBP7.37□□□□□ -1.23
VPS53-207ENST00000570510 SUMO1P63165 101 aaKnown RBP7.37□□□□□ -1.23
VPS53-207ENST00000570510 GOLT1AQ6ZVE7 132 aa7.37□□□□□ -1.23
VPS53-207ENST00000570510 COX8CQ7Z4L0 72 aa7.37□□□□□ -1.23
VPS53-207ENST00000570510 C11orf72Q8NBR9 251 aa7.37□□□□□ -1.23
VPS53-207ENST00000570510 OR11H4Q8NGC9 324 aa7.37□□□□□ -1.23
VPS53-207ENST00000570510 CHAC1Q9BUX1 264 aa7.37□□□□□ -1.23
VPS53-207ENST00000570510 TRAV1-1A0A0B4J248 108 aa7.36□□□□□ -1.23
VPS53-207ENST00000570510 MAP1LC3B2A6NCE7 125 aa7.36□□□□□ -1.23
VPS53-207ENST00000570510 SPINK4O60575 86 aa7.36□□□□□ -1.23
VPS53-207ENST00000570510 PFDN1O60925 122 aa7.36□□□□□ -1.23
VPS53-207ENST00000570510 IGLV2-8P01709 118 aa7.36□□□□□ -1.23
VPS53-207ENST00000570510 CD300CQ08708 224 aa7.36□□□□□ -1.23
VPS53-207ENST00000570510 ZNF726P1Q15940 193 aa7.36□□□□□ -1.23
VPS53-207ENST00000570510 ZFP69Q49AA0 526 aa7.36□□□□□ -1.23
VPS53-207ENST00000570510 PIK3CD-AS1Q5SR53 167 aa7.36□□□□□ -1.23
VPS53-207ENST00000570510 FAM159AQ6UWV7 190 aa7.36□□□□□ -1.23
VPS53-207ENST00000570510 PTH2Q96A98 100 aa7.36□□□□□ -1.23
VPS53-207ENST00000570510 ZNF471Q9BX82 626 aaPredicted RBP7.36□□□□□ -1.23
VPS53-207ENST00000570510 MAP1LC3BQ9GZQ8 125 aa7.36□□□□□ -1.23
VPS53-207ENST00000570510 TREM1Q9NP99 234 aa7.36□□□□□ -1.23
VPS53-207ENST00000570510 MRPL16Q9NX20 251 aaKnown RBP7.36□□□□□ -1.23
VPS53-207ENST00000570510 ZFP30Q9Y2G7 519 aa7.36□□□□□ -1.23
VPS53-207ENST00000570510 KLF12Q9Y4X4 402 aa7.36□□□□□ -1.23
VPS53-207ENST00000570510 TRAV8-6A0A0B4J262 113 aa7.35□□□□□ -1.23
VPS53-207ENST00000570510 RBFOX3A6NFN3 312 aa7.35□□□□□ -1.23
VPS53-207ENST00000570510 FAM74A7A6NL05 159 aa7.35□□□□□ -1.23
VPS53-207ENST00000570510 IBA57-AS1B1ANH7 110 aa7.35□□□□□ -1.23
VPS53-207ENST00000570510 GGTLC3B5MD39 225 aa7.35□□□□□ -1.23
VPS53-207ENST00000570510 C9JCJ5 164 aa7.35□□□□□ -1.23
VPS53-207ENST00000570510 TAGLN2P37802 199 aaKnown RBP7.35□□□□□ -1.23
VPS53-207ENST00000570510 RPL37AP61513 92 aaKnown RBP7.35□□□□□ -1.23
VPS53-207ENST00000570510 FLI1Q01543 452 aaPredicted RBP7.35□□□□□ -1.23
VPS53-207ENST00000570510 BTN1A1Q13410 526 aa7.35□□□□□ -1.23
VPS53-207ENST00000570510 FHL2Q14192 279 aa7.35□□□□□ -1.23
VPS53-207ENST00000570510 TMUB2Q71RG4 321 aa7.35□□□□□ -1.23
VPS53-207ENST00000570510 SLC51BQ86UW2 128 aa7.35□□□□□ -1.23
VPS53-207ENST00000570510 NHLRC2Q8NBF2 726 aa7.35□□□□□ -1.23
VPS53-207ENST00000570510 LECT2O14960 151 aa7.34□□□□□ -1.23
VPS53-207ENST00000570510 HMGB3O15347 200 aaKnown RBP7.34□□□□□ -1.23
VPS53-207ENST00000570510 PFN1P07737 140 aaKnown RBP7.34□□□□□ -1.23
VPS53-207ENST00000570510 LINC01620Q4KN68 170 aa7.34□□□□□ -1.23
VPS53-207ENST00000570510 SMUG1Q53HV7 270 aa7.34□□□□□ -1.23
VPS53-207ENST00000570510 OR10J3Q5JRS4 329 aa7.34□□□□□ -1.23
VPS53-207ENST00000570510 SH2D6Q7Z4S9 175 aa7.34□□□□□ -1.23
VPS53-207ENST00000570510 AKAP14Q86UN6 197 aa7.34□□□□□ -1.23
VPS53-207ENST00000570510 IQCF2Q8IXL9 164 aa7.34□□□□□ -1.23
VPS53-207ENST00000570510 RASL10AQ92737 203 aa7.34□□□□□ -1.23
VPS53-207ENST00000570510 FMC1Q96HJ9 113 aa7.34□□□□□ -1.23
VPS53-207ENST00000570510 PSG8Q9UQ74 426 aa7.34□□□□□ -1.23
VPS53-207ENST00000570510 SMLR1H3BR10 107 aa7.33□□□□□ -1.24
VPS53-207ENST00000570510 IFNA7P01567 189 aa7.33□□□□□ -1.24
VPS53-207ENST00000570510 IGLV2-11P01706 119 aa7.33□□□□□ -1.24
VPS53-207ENST00000570510 IGHV3-30P01768 117 aa7.33□□□□□ -1.24
VPS53-207ENST00000570510 IGHV3-33P01772 117 aa7.33□□□□□ -1.24
VPS53-207ENST00000570510 H2AFB1P0C5Y9 115 aa7.33□□□□□ -1.24
VPS53-207ENST00000570510 IGHV3-30-3P0DP02 117 aa7.33□□□□□ -1.24
VPS53-207ENST00000570510 IGHV3-30-5P0DP03 117 aa7.33□□□□□ -1.24
VPS53-207ENST00000570510 KRTAP10-4P60372 401 aaPredicted RBP7.33□□□□□ -1.24
VPS53-207ENST00000570510 LINC01556Q5JQF7 62 aa7.33□□□□□ -1.24
VPS53-207ENST00000570510 Q8TAT8 98 aa7.33□□□□□ -1.24
VPS53-207ENST00000570510 CIRBP-AS1Q8TBR5 109 aa7.33□□□□□ -1.24
VPS53-207ENST00000570510 DPH3P1Q9H4G8 78 aa7.33□□□□□ -1.24
VPS53-207ENST00000570510 SDF2L1Q9HCN8 221 aa7.33□□□□□ -1.24
VPS53-207ENST00000570510 FABP5P3A8MUU1 101 aa7.32□□□□□ -1.24
VPS53-207ENST00000570510 PEX7O00628 323 aa7.32□□□□□ -1.24
VPS53-207ENST00000570510 SFTA3P0C7M3 94 aa7.32□□□□□ -1.24
VPS53-207ENST00000570510 PRR9Q5T870 116 aa7.32□□□□□ -1.24
VPS53-207ENST00000570510 SFT2D1Q8WV19 159 aa7.32□□□□□ -1.24
VPS53-207ENST00000570510 MANBALQ9NQG1 85 aa7.32□□□□□ -1.24
VPS53-207ENST00000570510 FAT3Q8TDW7 4589 aa7.31□□□□□ -1.24
VPS53-207ENST00000570510 M0R2P5 195 aa7.31□□□□□ -1.24
VPS53-207ENST00000570510 SULT1A2P50226 295 aa7.31□□□□□ -1.24
VPS53-207ENST00000570510 TMEM183BQ1AE95 376 aa7.31□□□□□ -1.24
VPS53-207ENST00000570510 DNLZQ5SXM8 178 aa7.31□□□□□ -1.24
VPS53-207ENST00000570510 FAM213BQ8TBF2 198 aa7.31□□□□□ -1.24
VPS53-207ENST00000570510 TVP23CQ96ET8 276 aa7.31□□□□□ -1.24
VPS53-207ENST00000570510 SMIM12Q96EX1 92 aa7.31□□□□□ -1.24
VPS53-207ENST00000570510 TRAV8-1A0A0A6YYK1 113 aa7.3□□□□□ -1.24
VPS53-207ENST00000570510 NDUFS6O75380 124 aaKnown RBP7.3□□□□□ -1.24
VPS53-207ENST00000570510 UBE2G1P62253 170 aa7.3□□□□□ -1.24
VPS53-207ENST00000570510 GNG5P63218 68 aa7.3□□□□□ -1.24
VPS53-207ENST00000570510 ZNF479Q96JC4 524 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms