RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 MRPL23Q16540 153 aaKnown RBP10.34□□□□□ -0.75
VPS39-210ENST00000568357 ZNF575Q86XF7 245 aa10.34□□□□□ -0.75
VPS39-210ENST00000568357 TRAV1-1A0A0B4J248 108 aa10.33□□□□□ -0.76
VPS39-210ENST00000568357 K7EQD1 137 aa10.33□□□□□ -0.76
VPS39-210ENST00000568357 SH2D1AO60880 128 aa10.33□□□□□ -0.76
VPS39-210ENST00000568357 ORM1P02763 201 aa10.33□□□□□ -0.76
VPS39-210ENST00000568357 GYPEP15421 78 aa10.33□□□□□ -0.76
VPS39-210ENST00000568357 AKR1C3P42330 323 aa10.33□□□□□ -0.76
VPS39-210ENST00000568357 CFAP126Q5VTH2 177 aa10.33□□□□□ -0.76
VPS39-210ENST00000568357 LYPD5Q6UWN5 251 aa10.33□□□□□ -0.76
VPS39-210ENST00000568357 AKAP14Q86UN6 197 aa10.33□□□□□ -0.76
VPS39-210ENST00000568357 PTH2Q96A98 100 aa10.33□□□□□ -0.76
VPS39-210ENST00000568357 KRTAP1-5Q9BYS1 174 aa10.33□□□□□ -0.76
VPS39-210ENST00000568357 SCO2A0A1W2PP80 73 aa10.32□□□□□ -0.76
VPS39-210ENST00000568357 KRBOX1C9JBD0 128 aa10.32□□□□□ -0.76
VPS39-210ENST00000568357 RS1O15537 224 aa10.32□□□□□ -0.76
VPS39-210ENST00000568357 SULT1A2P50226 295 aa10.32□□□□□ -0.76
VPS39-210ENST00000568357 RAB5CP51148 216 aa10.32□□□□□ -0.76
VPS39-210ENST00000568357 ZNF674Q2M3X9 581 aa10.32□□□□□ -0.76
VPS39-210ENST00000568357 SOHLH1Q5JUK2 328 aa10.32□□□□□ -0.76
VPS39-210ENST00000568357 ZNF506Q5JVG8 444 aa10.32□□□□□ -0.76
VPS39-210ENST00000568357 FAM162BQ5T6X4 162 aa10.32□□□□□ -0.76
VPS39-210ENST00000568357 EIF5AL1Q6IS14 154 aaKnown RBP10.32□□□□□ -0.76
VPS39-210ENST00000568357 NEGR1Q7Z3B1 354 aa10.32□□□□□ -0.76
VPS39-210ENST00000568357 NHLRC2Q8NBF2 726 aa10.32□□□□□ -0.76
VPS39-210ENST00000568357 LOC100131303A0A0U1RQF7 123 aa10.31□□□□□ -0.76
VPS39-210ENST00000568357 B4DEV8 164 aa10.31□□□□□ -0.76
VPS39-210ENST00000568357 M0R036 132 aa10.31□□□□□ -0.76
VPS39-210ENST00000568357 GATA1P15976 413 aaPredicted RBP10.31□□□□□ -0.76
VPS39-210ENST00000568357 ASIPP42127 132 aa10.31□□□□□ -0.76
VPS39-210ENST00000568357 SLC51BQ86UW2 128 aa10.31□□□□□ -0.76
VPS39-210ENST00000568357 IGHV3-73A0A0B4J1V6 119 aa10.3□□□□□ -0.76
VPS39-210ENST00000568357 GRIFINA4D1Z8 144 aa10.3□□□□□ -0.76
VPS39-210ENST00000568357 S100A9P06702 114 aaKnown RBP10.3□□□□□ -0.76
VPS39-210ENST00000568357 S100A4P26447 101 aaKnown RBP10.3□□□□□ -0.76
VPS39-210ENST00000568357 SRIP30626 198 aa10.3□□□□□ -0.76
VPS39-210ENST00000568357 DNLZQ5SXM8 178 aa10.3□□□□□ -0.76
VPS39-210ENST00000568357 C6orf223Q8N319 242 aa10.3□□□□□ -0.76
VPS39-210ENST00000568357 C9orf62Q8N4C0 152 aa10.3□□□□□ -0.76
VPS39-210ENST00000568357 GNG13Q9P2W3 67 aa10.3□□□□□ -0.76
VPS39-210ENST00000568357 TMSB15BA0A087X1C1 80 aa10.29□□□□□ -0.76
VPS39-210ENST00000568357 NXPH4O95158 308 aa10.29□□□□□ -0.76
VPS39-210ENST00000568357 ARMS2P0C7Q2 107 aa10.29□□□□□ -0.76
VPS39-210ENST00000568357 BAGE2Q86Y30 109 aa10.29□□□□□ -0.76
VPS39-210ENST00000568357 SLC25A29Q8N8R3 303 aa10.29□□□□□ -0.76
VPS39-210ENST00000568357 PCNPQ8WW12 178 aaKnown RBP10.29□□□□□ -0.76
VPS39-210ENST00000568357 MLST8Q9BVC4 326 aa10.29□□□□□ -0.76
VPS39-210ENST00000568357 MANBALQ9NQG1 85 aa10.29□□□□□ -0.76
VPS39-210ENST00000568357 IL36BQ9NZH7 164 aa10.29□□□□□ -0.76
VPS39-210ENST00000568357 A0A1B0GVG6 124 aa10.28□□□□□ -0.76
VPS39-210ENST00000568357 H3BVH4 76 aa10.28□□□□□ -0.76
VPS39-210ENST00000568357 SIVA1O15304 175 aa10.28□□□□□ -0.76
VPS39-210ENST00000568357 CIDEAO60543 219 aa10.28□□□□□ -0.76
VPS39-210ENST00000568357 LINC01559Q495D7 138 aa10.28□□□□□ -0.76
VPS39-210ENST00000568357 DMRTA1Q5VZB9 504 aa10.28□□□□□ -0.76
VPS39-210ENST00000568357 Q6ZSN1 163 aa10.28□□□□□ -0.76
VPS39-210ENST00000568357 JPT2Q9H910 190 aa10.28□□□□□ -0.76
VPS39-210ENST00000568357 A0A1W2PPQ1 181 aa10.27□□□□□ -0.77
VPS39-210ENST00000568357 RPL35P42766 123 aaKnown RBP10.27□□□□□ -0.77
VPS39-210ENST00000568357 TNP2Q05952 138 aa10.27□□□□□ -0.77
VPS39-210ENST00000568357 TTC32Q5I0X7 151 aa10.27□□□□□ -0.77
VPS39-210ENST00000568357 PIK3CD-AS1Q5SR53 167 aa10.27□□□□□ -0.77
VPS39-210ENST00000568357 DERL1Q9BUN8 251 aa10.27□□□□□ -0.77
VPS39-210ENST00000568357 SAMD10Q9BYL1 202 aa10.27□□□□□ -0.77
VPS39-210ENST00000568357 PARLQ9H300 379 aa10.27□□□□□ -0.77
VPS39-210ENST00000568357 SCRT2Q9NQ03 307 aa10.27□□□□□ -0.77
VPS39-210ENST00000568357 TRBV6-4A0A1B0GX49 114 aa10.26□□□□□ -0.77
VPS39-210ENST00000568357 A8MWV9 139 aa10.26□□□□□ -0.77
VPS39-210ENST00000568357 C11orf52Q96A22 123 aa10.26□□□□□ -0.77
VPS39-210ENST00000568357 TXNDC17Q9BRA2 123 aa10.26□□□□□ -0.77
VPS39-210ENST00000568357 TEX46H3BTG2 121 aa10.25□□□□□ -0.77
VPS39-210ENST00000568357 RPL19P84098 196 aaKnown RBP10.25□□□□□ -0.77
VPS39-210ENST00000568357 UFSP1Q6NVU6 142 aa10.25□□□□□ -0.77
VPS39-210ENST00000568357 ZFP2Q6ZN57 461 aa10.25□□□□□ -0.77
VPS39-210ENST00000568357 MGST1P10620 155 aaKnown RBP10.24□□□□□ -0.77
VPS39-210ENST00000568357 RHOHQ15669 191 aa10.24□□□□□ -0.77
VPS39-210ENST00000568357 WFDC10BQ8IUB3 73 aa10.24□□□□□ -0.77
VPS39-210ENST00000568357 PRADC1Q9BSG0 188 aa10.24□□□□□ -0.77
VPS39-210ENST00000568357 Q9UF83 564 aa10.24□□□□□ -0.77
VPS39-210ENST00000568357 PHLDA3Q9Y5J5 127 aa10.24□□□□□ -0.77
VPS39-210ENST00000568357 RAB19A4D1S5 217 aa10.23□□□□□ -0.77
VPS39-210ENST00000568357 MEF2BQ02080 365 aaPredicted RBP10.23□□□□□ -0.77
VPS39-210ENST00000568357 PRR27Q6MZM9 219 aa10.23□□□□□ -0.77
VPS39-210ENST00000568357 SH2D6Q7Z4S9 175 aa10.23□□□□□ -0.77
VPS39-210ENST00000568357 SYT8Q8NBV8 401 aa10.23□□□□□ -0.77
VPS39-210ENST00000568357 M0R381 172 aa10.22□□□□□ -0.77
VPS39-210ENST00000568357 IGLV2-8P01709 118 aa10.22□□□□□ -0.77
VPS39-210ENST00000568357 BCL2P10415 239 aa10.22□□□□□ -0.77
VPS39-210ENST00000568357 NKX2-5P52952 324 aaPredicted RBP10.22□□□□□ -0.77
VPS39-210ENST00000568357 TIRAPP58753 221 aa10.22□□□□□ -0.77
VPS39-210ENST00000568357 LINC00315P59091 139 aa10.22□□□□□ -0.77
VPS39-210ENST00000568357 ALKAL2Q6UX46 152 aa10.22□□□□□ -0.77
VPS39-210ENST00000568357 SFRP2Q96HF1 295 aa10.22□□□□□ -0.77
VPS39-210ENST00000568357 TNFRSF18Q9Y5U5 241 aa10.22□□□□□ -0.77
VPS39-210ENST00000568357 A0A087WWL8 130 aa10.21□□□□□ -0.77
VPS39-210ENST00000568357 CRYGDP07320 174 aa10.21□□□□□ -0.77
VPS39-210ENST00000568357 BTF3P20290 206 aaKnown RBP10.21□□□□□ -0.77
VPS39-210ENST00000568357 CENPWQ5EE01 88 aa10.21□□□□□ -0.77
VPS39-210ENST00000568357 C14orf178Q8N769 122 aaPredicted RBP10.21□□□□□ -0.77
VPS39-210ENST00000568357 MED9Q9NWA0 146 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 146.1 ms