RNA–Protein interactions for RNA: ENST00000567635.5

SF3B3-209, Transcript of splicing factor 3b subunit 3, human

TSL 5

Gene SF3B3, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-209	ENST00000567635	SMIM15	Q7Z3B0	74 aa		4.82	□□□□□ -1.64
SF3B3-209	ENST00000567635	ZNRF2	Q8NHG8	242 aa		4.82	□□□□□ -1.64
SF3B3-209	ENST00000567635		Q8TAT8	98 aa		4.82	□□□□□ -1.64
SF3B3-209	ENST00000567635	CMTM2	Q8TAZ6	248 aa		4.82	□□□□□ -1.64
SF3B3-209	ENST00000567635	FAM213B	Q8TBF2	198 aa		4.82	□□□□□ -1.64
SF3B3-209	ENST00000567635	C18orf15	Q96N68	181 aa		4.82	□□□□□ -1.64
SF3B3-209	ENST00000567635	PRO1933	Q9H354	126 aa		4.82	□□□□□ -1.64
SF3B3-209	ENST00000567635	TP53TG3	Q9ULZ0	132 aa		4.82	□□□□□ -1.64
SF3B3-209	ENST00000567635	LINC00588	Q9Y4M8	146 aa		4.82	□□□□□ -1.64
SF3B3-209	ENST00000567635	FRAS1	Q86XX4	4008 aa		4.81	□□□□□ -1.64
SF3B3-209	ENST00000567635	NBDY	A0A0U1RRE5	68 aa		4.81	□□□□□ -1.64
SF3B3-209	ENST00000567635		A0A1B0GVY2	172 aa		4.81	□□□□□ -1.64
SF3B3-209	ENST00000567635	HMGB3	O15347	200 aa	Known RBP	4.81	□□□□□ -1.64
SF3B3-209	ENST00000567635	GCG	P01275	180 aa		4.81	□□□□□ -1.64
SF3B3-209	ENST00000567635	RPS10	P46783	165 aa	Known RBP	4.81	□□□□□ -1.64
SF3B3-209	ENST00000567635	TCL1A	P56279	114 aa		4.81	□□□□□ -1.64
SF3B3-209	ENST00000567635	JOSD1	Q15040	202 aa	Predicted RBP	4.81	□□□□□ -1.64
SF3B3-209	ENST00000567635	GOLT1A	Q6ZVE7	132 aa		4.81	□□□□□ -1.64
SF3B3-209	ENST00000567635	HIST3H2BB	Q8N257	126 aa		4.81	□□□□□ -1.64
SF3B3-209	ENST00000567635	ACTR3C	Q9C0K3	210 aa	Predicted RBP	4.81	□□□□□ -1.64
SF3B3-209	ENST00000567635	SMDT1	Q9H4I9	107 aa		4.81	□□□□□ -1.64
SF3B3-209	ENST00000567635	RPH3AL	Q9UNE2	315 aa		4.81	□□□□□ -1.64
SF3B3-209	ENST00000567635	PAX4	O43316	350 aa		4.8	□□□□□ -1.64
SF3B3-209	ENST00000567635	ARL14EPL	P0DKL9	152 aa		4.8	□□□□□ -1.64
SF3B3-209	ENST00000567635	CDC34	P49427	236 aa	Predicted RBP	4.8	□□□□□ -1.64
SF3B3-209	ENST00000567635	CCL20	P78556	96 aa		4.8	□□□□□ -1.64
SF3B3-209	ENST00000567635	SRSF3	P84103	164 aa	Known RBP	4.8	□□□□□ -1.64
SF3B3-209	ENST00000567635	ZNF415	Q09FC8	603 aa		4.8	□□□□□ -1.64
SF3B3-209	ENST00000567635	SLA	Q13239	276 aa		4.8	□□□□□ -1.64
SF3B3-209	ENST00000567635	ESRG	Q1W209	222 aa		4.8	□□□□□ -1.64
SF3B3-209	ENST00000567635	ZNF674	Q2M3X9	581 aa		4.8	□□□□□ -1.64
SF3B3-209	ENST00000567635	MUC21	Q5SSG8	566 aa		4.8	□□□□□ -1.64
SF3B3-209	ENST00000567635		Q6AWC8	147 aa		4.8	□□□□□ -1.64
SF3B3-209	ENST00000567635	FAM159A	Q6UWV7	190 aa		4.8	□□□□□ -1.64
SF3B3-209	ENST00000567635	VSIG2	Q96IQ7	327 aa		4.8	□□□□□ -1.64
SF3B3-209	ENST00000567635	PACRG	Q96M98	296 aa	Predicted RBP	4.8	□□□□□ -1.64
SF3B3-209	ENST00000567635	SPX	Q9BT56	116 aa		4.8	□□□□□ -1.64
SF3B3-209	ENST00000567635		Q9H8V8	135 aa		4.8	□□□□□ -1.64
SF3B3-209	ENST00000567635	MRPL16	Q9NX20	251 aa	Known RBP	4.8	□□□□□ -1.64
SF3B3-209	ENST00000567635	MDFIC	Q9P1T7	246 aa		4.8	□□□□□ -1.64
SF3B3-209	ENST00000567635	DNAH6	Q9C0G6	4158 aa		4.8	□□□□□ -1.64
SF3B3-209	ENST00000567635	CTXND1	A0A1B0GTU2	59 aa		4.79	□□□□□ -1.64
SF3B3-209	ENST00000567635	SERTM2	A0A1B0GWG4	89 aa		4.79	□□□□□ -1.64
SF3B3-209	ENST00000567635	RBFOX3	A6NFN3	312 aa		4.79	□□□□□ -1.64
SF3B3-209	ENST00000567635	IFITM10	A6NMD0	228 aa		4.79	□□□□□ -1.64
SF3B3-209	ENST00000567635	PHOX2A	O14813	284 aa		4.79	□□□□□ -1.64
SF3B3-209	ENST00000567635	EREG	O14944	169 aa		4.79	□□□□□ -1.64
SF3B3-209	ENST00000567635	CXorf1	O96002	111 aa		4.79	□□□□□ -1.64
SF3B3-209	ENST00000567635	STAG3L2	P0CL84	134 aa		4.79	□□□□□ -1.64
SF3B3-209	ENST00000567635	STAG3L3	P0CL85	134 aa		4.79	□□□□□ -1.64
SF3B3-209	ENST00000567635	GCHFR	P30047	84 aa		4.79	□□□□□ -1.64
SF3B3-209	ENST00000567635	ZNF726P1	Q15940	193 aa		4.79	□□□□□ -1.64
SF3B3-209	ENST00000567635	TMEM183B	Q1AE95	376 aa		4.79	□□□□□ -1.64
SF3B3-209	ENST00000567635	TMEM183A	Q8IXX5	376 aa		4.79	□□□□□ -1.64
SF3B3-209	ENST00000567635	C6orf223	Q8N319	242 aa		4.79	□□□□□ -1.64
SF3B3-209	ENST00000567635	RASL10A	Q92737	203 aa		4.79	□□□□□ -1.64
SF3B3-209	ENST00000567635	TVP23C	Q96ET8	276 aa		4.79	□□□□□ -1.64
SF3B3-209	ENST00000567635	HHLA3	Q9XRX5	114 aa		4.79	□□□□□ -1.64
SF3B3-209	ENST00000567635	VPS13D	Q5THJ4	4388 aa		4.79	□□□□□ -1.64
SF3B3-209	ENST00000567635	TRGV11	A0A075B6L2	103 aa		4.78	□□□□□ -1.64
SF3B3-209	ENST00000567635		A0A087WWC5	75 aa		4.78	□□□□□ -1.64
SF3B3-209	ENST00000567635		A0A096LPF7	62 aa		4.78	□□□□□ -1.64
SF3B3-209	ENST00000567635	TRAV8-1	A0A0A6YYK1	113 aa		4.78	□□□□□ -1.64
SF3B3-209	ENST00000567635	TRAV21	A0A0B4J279	112 aa		4.78	□□□□□ -1.64
SF3B3-209	ENST00000567635	TRGV4	A0A0C4DH28	118 aa		4.78	□□□□□ -1.64
SF3B3-209	ENST00000567635	MAP1LC3B2	A6NCE7	125 aa		4.78	□□□□□ -1.64
SF3B3-209	ENST00000567635		C9JQL5	133 aa		4.78	□□□□□ -1.64
SF3B3-209	ENST00000567635		K7EQM0	130 aa		4.78	□□□□□ -1.64
SF3B3-209	ENST00000567635	GNRH2	O43555	120 aa		4.78	□□□□□ -1.64
SF3B3-209	ENST00000567635	IGHV3-53	P01767	116 aa		4.78	□□□□□ -1.64
SF3B3-209	ENST00000567635	FABP4	P15090	132 aa		4.78	□□□□□ -1.64
SF3B3-209	ENST00000567635	TAGLN2	P37802	199 aa	Known RBP	4.78	□□□□□ -1.64
SF3B3-209	ENST00000567635	ERVFC1-1	P60608	527 aa		4.78	□□□□□ -1.64
SF3B3-209	ENST00000567635	SUMO1	P63165	101 aa	Known RBP	4.78	□□□□□ -1.64
SF3B3-209	ENST00000567635	GNG5	P63218	68 aa		4.78	□□□□□ -1.64
SF3B3-209	ENST00000567635	FHL2	Q14192	279 aa		4.78	□□□□□ -1.64
SF3B3-209	ENST00000567635	IQCJ	Q1A5X6	159 aa		4.78	□□□□□ -1.64
SF3B3-209	ENST00000567635	TDRG1	Q3Y452	100 aa		4.78	□□□□□ -1.64
SF3B3-209	ENST00000567635	ZNF506	Q5JVG8	444 aa		4.78	□□□□□ -1.64
SF3B3-209	ENST00000567635	CDPF1	Q6NVV7	123 aa		4.78	□□□□□ -1.64
SF3B3-209	ENST00000567635	C5orf17	Q8NAS9	161 aa		4.78	□□□□□ -1.64
SF3B3-209	ENST00000567635	ISOC2	Q96AB3	205 aa		4.78	□□□□□ -1.64
SF3B3-209	ENST00000567635	YPEL4	Q96NS1	127 aa		4.78	□□□□□ -1.64
SF3B3-209	ENST00000567635	NDFIP1	Q9BT67	221 aa		4.78	□□□□□ -1.64
SF3B3-209	ENST00000567635	UPK3B	Q9BT76	320 aa		4.78	□□□□□ -1.64
SF3B3-209	ENST00000567635	SNHG12	Q9BXW3	62 aa		4.78	□□□□□ -1.64
SF3B3-209	ENST00000567635	MAP1LC3B	Q9GZQ8	125 aa		4.78	□□□□□ -1.64
SF3B3-209	ENST00000567635	EIF5A2	Q9GZV4	153 aa	Known RBP	4.78	□□□□□ -1.64
SF3B3-209	ENST00000567635	TMEM167B	Q9NRX6	74 aa		4.78	□□□□□ -1.64
SF3B3-209	ENST00000567635	PRO0255	Q9UI72	69 aa		4.78	□□□□□ -1.64
SF3B3-209	ENST00000567635	NAGK	Q9UJ70	344 aa		4.78	□□□□□ -1.64
SF3B3-209	ENST00000567635	EPDR1	Q9UM22	224 aa		4.78	□□□□□ -1.64
SF3B3-209	ENST00000567635	MRPS16	Q9Y3D3	137 aa	Known RBP	4.78	□□□□□ -1.64
SF3B3-209	ENST00000567635	ICOS	Q9Y6W8	199 aa		4.78	□□□□□ -1.64
SF3B3-209	ENST00000567635	IGHV3-16	A0A0C4DH30	117 aa		4.77	□□□□□ -1.65
SF3B3-209	ENST00000567635		M0R2P5	195 aa		4.77	□□□□□ -1.65
SF3B3-209	ENST00000567635	HIST1H2BK	O60814	126 aa		4.77	□□□□□ -1.65
SF3B3-209	ENST00000567635	TCRA	P04437	139 aa		4.77	□□□□□ -1.65
SF3B3-209	ENST00000567635	HIST1H2BJ	P06899	126 aa		4.77	□□□□□ -1.65
SF3B3-209	ENST00000567635	SRP19	P09132	144 aa	Known RBP	4.77	□□□□□ -1.65

Retrieved 100 of 20,778 RNA–protein pairs in 111.8 ms