RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 GNG13Q9P2W3 67 aa9.28□□□□□ -0.92
CLK3-216ENST00000564468 NBDYA0A0U1RRE5 68 aa9.27□□□□□ -0.93
CLK3-216ENST00000564468 SCO2A0A1W2PP80 73 aa9.27□□□□□ -0.93
CLK3-216ENST00000564468 RNASE3P12724 160 aaKnown RBP9.27□□□□□ -0.93
CLK3-216ENST00000564468 ZNF674Q2M3X9 581 aa9.27□□□□□ -0.93
CLK3-216ENST00000564468 TTC32Q5I0X7 151 aa9.27□□□□□ -0.93
CLK3-216ENST00000564468 DNLZQ5SXM8 178 aa9.27□□□□□ -0.93
CLK3-216ENST00000564468 C1orf134Q5TEV5 83 aa9.27□□□□□ -0.93
CLK3-216ENST00000564468 NEGR1Q7Z3B1 354 aa9.27□□□□□ -0.93
CLK3-216ENST00000564468 SH2D6Q7Z4S9 175 aa9.27□□□□□ -0.93
CLK3-216ENST00000564468 IL36BQ9NZH7 164 aa9.27□□□□□ -0.93
CLK3-216ENST00000564468 RS1O15537 224 aa9.26□□□□□ -0.93
CLK3-216ENST00000564468 SH2D1AO60880 128 aa9.26□□□□□ -0.93
CLK3-216ENST00000564468 MED14OSP0DP75 135 aa9.26□□□□□ -0.93
CLK3-216ENST00000564468 SRIP30626 198 aa9.26□□□□□ -0.93
CLK3-216ENST00000564468 CRIP1P50238 77 aa9.26□□□□□ -0.93
CLK3-216ENST00000564468 BAGE2Q86Y30 109 aa9.26□□□□□ -0.93
CLK3-216ENST00000564468 C9orf62Q8N4C0 152 aa9.26□□□□□ -0.93
CLK3-216ENST00000564468 SYT8Q8NBV8 401 aa9.26□□□□□ -0.93
CLK3-216ENST00000564468 PGPEP1LA6NFU8 196 aa9.25□□□□□ -0.93
CLK3-216ENST00000564468 A8MWV9 139 aa9.25□□□□□ -0.93
CLK3-216ENST00000564468 KRBOX1C9JBD0 128 aa9.25□□□□□ -0.93
CLK3-216ENST00000564468 GYPEP15421 78 aa9.25□□□□□ -0.93
CLK3-216ENST00000564468 GATA1P15976 413 aaPredicted RBP9.25□□□□□ -0.93
CLK3-216ENST00000564468 TAGLN2P37802 199 aaKnown RBP9.25□□□□□ -0.93
CLK3-216ENST00000564468 CCL20P78556 96 aa9.25□□□□□ -0.93
CLK3-216ENST00000564468 LINC01559Q495D7 138 aa9.25□□□□□ -0.93
CLK3-216ENST00000564468 ZNF506Q5JVG8 444 aa9.25□□□□□ -0.93
CLK3-216ENST00000564468 CFAP126Q5VTH2 177 aa9.25□□□□□ -0.93
CLK3-216ENST00000564468 PRADC1Q9BSG0 188 aa9.25□□□□□ -0.93
CLK3-216ENST00000564468 A0A1W2PPQ1 181 aa9.24□□□□□ -0.93
CLK3-216ENST00000564468 PRSS29PA6NIE9 313 aa9.24□□□□□ -0.93
CLK3-216ENST00000564468 K7EQD1 137 aa9.24□□□□□ -0.93
CLK3-216ENST00000564468 M0R036 132 aa9.24□□□□□ -0.93
CLK3-216ENST00000564468 RTL8CO15255 209 aa9.24□□□□□ -0.93
CLK3-216ENST00000564468 PDE6DO43924 150 aa9.24□□□□□ -0.93
CLK3-216ENST00000564468 C11orf52Q96A22 123 aa9.24□□□□□ -0.93
CLK3-216ENST00000564468 TRBV6-4A0A1B0GX49 114 aa9.23□□□□□ -0.93
CLK3-216ENST00000564468 H3BVH4 76 aa9.23□□□□□ -0.93
CLK3-216ENST00000564468 SIVA1O15304 175 aa9.23□□□□□ -0.93
CLK3-216ENST00000564468 ARMS2P0C7Q2 107 aa9.23□□□□□ -0.93
CLK3-216ENST00000564468 MGST1P10620 155 aaKnown RBP9.23□□□□□ -0.93
CLK3-216ENST00000564468 BTF3P20290 206 aaKnown RBP9.23□□□□□ -0.93
CLK3-216ENST00000564468 RPL35P42766 123 aaKnown RBP9.23□□□□□ -0.93
CLK3-216ENST00000564468 MEF2BQ02080 365 aaPredicted RBP9.23□□□□□ -0.93
CLK3-216ENST00000564468 RHOHQ15669 191 aa9.23□□□□□ -0.93
CLK3-216ENST00000564468 LYPD5Q6UWN5 251 aa9.23□□□□□ -0.93
CLK3-216ENST00000564468 ZFP2Q6ZN57 461 aa9.23□□□□□ -0.93
CLK3-216ENST00000564468 C6orf223Q8N319 242 aa9.23□□□□□ -0.93
CLK3-216ENST00000564468 NHLRC2Q8NBF2 726 aa9.23□□□□□ -0.93
CLK3-216ENST00000564468 MLST8Q9BVC4 326 aa9.23□□□□□ -0.93
CLK3-216ENST00000564468 PHLDA3Q9Y5J5 127 aa9.23□□□□□ -0.93
CLK3-216ENST00000564468 CXCL1P09341 107 aa9.22□□□□□ -0.93
CLK3-216ENST00000564468 BLOC1S1P78537 153 aa9.22□□□□□ -0.93
CLK3-216ENST00000564468 VAX2Q9UIW0 290 aa9.22□□□□□ -0.93
CLK3-216ENST00000564468 BOLA1Q9Y3E2 137 aa9.22□□□□□ -0.93
CLK3-216ENST00000564468 GRIFINA4D1Z8 144 aa9.21□□□□□ -0.94
CLK3-216ENST00000564468 RHODO00212 210 aa9.21□□□□□ -0.94
CLK3-216ENST00000564468 NXPH4O95158 308 aa9.21□□□□□ -0.94
CLK3-216ENST00000564468 BCL2P10415 239 aa9.21□□□□□ -0.94
CLK3-216ENST00000564468 SLC25A29Q8N8R3 303 aa9.21□□□□□ -0.94
CLK3-216ENST00000564468 SMIM12Q96EX1 92 aa9.21□□□□□ -0.94
CLK3-216ENST00000564468 TMSB15BA0A087X1C1 80 aa9.2□□□□□ -0.94
CLK3-216ENST00000564468 IGHV3-73A0A0B4J1V6 119 aa9.2□□□□□ -0.94
CLK3-216ENST00000564468 DMRTA1Q5VZB9 504 aa9.2□□□□□ -0.94
CLK3-216ENST00000564468 PRR27Q6MZM9 219 aa9.2□□□□□ -0.94
CLK3-216ENST00000564468 ALKAL2Q6UX46 152 aa9.2□□□□□ -0.94
CLK3-216ENST00000564468 ZFP82Q8N141 532 aa9.2□□□□□ -0.94
CLK3-216ENST00000564468 DAZAP1Q96EP5 407 aaKnown RBP9.2□□□□□ -0.94
CLK3-216ENST00000564468 PARLQ9H300 379 aa9.2□□□□□ -0.94
CLK3-216ENST00000564468 SCRT2Q9NQ03 307 aa9.2□□□□□ -0.94
CLK3-216ENST00000564468 BIN3Q9NQY0 253 aa9.2□□□□□ -0.94
CLK3-216ENST00000564468 MED9Q9NWA0 146 aa9.2□□□□□ -0.94
CLK3-216ENST00000564468 TRAV9-2A0A087WT02 112 aa9.19□□□□□ -0.94
CLK3-216ENST00000564468 K7EP13 123 aa9.19□□□□□ -0.94
CLK3-216ENST00000564468 GNG4P50150 75 aa9.19□□□□□ -0.94
CLK3-216ENST00000564468 TIRAPP58753 221 aa9.19□□□□□ -0.94
CLK3-216ENST00000564468 CENPWQ5EE01 88 aa9.19□□□□□ -0.94
CLK3-216ENST00000564468 PKHD1P08F94 4074 aa9.18□□□□□ -0.94
CLK3-216ENST00000564468 LOC100131303A0A0U1RQF7 123 aa9.18□□□□□ -0.94
CLK3-216ENST00000564468 A0A1B0GVG6 124 aa9.18□□□□□ -0.94
CLK3-216ENST00000564468 M0R381 172 aa9.18□□□□□ -0.94
CLK3-216ENST00000564468 SFRP2Q96HF1 295 aa9.18□□□□□ -0.94
CLK3-216ENST00000564468 DERL1Q9BUN8 251 aa9.18□□□□□ -0.94
CLK3-216ENST00000564468 LY96Q9Y6Y9 160 aa9.18□□□□□ -0.94
CLK3-216ENST00000564468 RPS20P60866 119 aaKnown RBP9.17□□□□□ -0.94
CLK3-216ENST00000564468 ZNF575Q86XF7 245 aa9.17□□□□□ -0.94
CLK3-216ENST00000564468 TRAV8-6A0A0B4J262 113 aa9.16□□□□□ -0.94
CLK3-216ENST00000564468 A0A1B0GVY2 172 aa9.16□□□□□ -0.94
CLK3-216ENST00000564468 XKRY2A2RUG3 117 aa9.16□□□□□ -0.94
CLK3-216ENST00000564468 OR5AL1P0C617 328 aa9.16□□□□□ -0.94
CLK3-216ENST00000564468 EVI2AP22794 236 aa9.16□□□□□ -0.94
CLK3-216ENST00000564468 RPL19P84098 196 aaKnown RBP9.16□□□□□ -0.94
CLK3-216ENST00000564468 FAM74A4Q5TZK3 123 aa9.16□□□□□ -0.94
CLK3-216ENST00000564468 ATP6V0E2Q8NHE4 81 aa9.16□□□□□ -0.94
CLK3-216ENST00000564468 JPT2Q9H910 190 aa9.16□□□□□ -0.94
CLK3-216ENST00000564468 DNAH17Q9UFH2 4485 aa9.15□□□□□ -0.94
CLK3-216ENST00000564468 RAB19A4D1S5 217 aa9.15□□□□□ -0.94
CLK3-216ENST00000564468 RBFOX3A6NFN3 312 aa9.15□□□□□ -0.94
CLK3-216ENST00000564468 SNAI2O43623 268 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 190.5 ms