RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 MARVELD1Q9BSK0 173 aa10.79□□□□□ -0.68
CLN3-208ENST00000561505 RPH3ALQ9UNE2 315 aa10.79□□□□□ -0.68
CLN3-208ENST00000561505 IGHV3-73A0A0B4J1V6 119 aa10.78□□□□□ -0.68
CLN3-208ENST00000561505 GCGP01275 180 aa10.78□□□□□ -0.68
CLN3-208ENST00000561505 STAG3L2P0CL84 134 aa10.78□□□□□ -0.68
CLN3-208ENST00000561505 STAG3L3P0CL85 134 aa10.78□□□□□ -0.68
CLN3-208ENST00000561505 RAB2AP61019 212 aa10.78□□□□□ -0.68
CLN3-208ENST00000561505 TOR2AQ5JU69 321 aa10.78□□□□□ -0.68
CLN3-208ENST00000561505 SCXQ7RTU7 201 aa10.78□□□□□ -0.68
CLN3-208ENST00000561505 DAZ4Q86SG3 579 aaKnown RBP10.78□□□□□ -0.68
CLN3-208ENST00000561505 NDFIP1Q9BT67 221 aa10.78□□□□□ -0.68
CLN3-208ENST00000561505 PARLQ9H300 379 aa10.78□□□□□ -0.68
CLN3-208ENST00000561505 DAZ3Q9NR90 486 aaKnown RBP10.78□□□□□ -0.68
CLN3-208ENST00000561505 PSG8Q9UQ74 426 aa10.78□□□□□ -0.68
CLN3-208ENST00000561505 A0A087WWC5 75 aa10.77□□□□□ -0.69
CLN3-208ENST00000561505 A0A1W2PPV4 95 aa10.77□□□□□ -0.69
CLN3-208ENST00000561505 INMT-MINDY4F8WBC2 141 aa10.77□□□□□ -0.69
CLN3-208ENST00000561505 OXTP01178 125 aa10.77□□□□□ -0.69
CLN3-208ENST00000561505 PET100P0DJ07 73 aa10.77□□□□□ -0.69
CLN3-208ENST00000561505 IFITM3Q01628 133 aa10.77□□□□□ -0.69
CLN3-208ENST00000561505 TMEM75Q8N9X5 138 aa10.77□□□□□ -0.69
CLN3-208ENST00000561505 OR2G3Q8NGZ4 309 aa10.77□□□□□ -0.69
CLN3-208ENST00000561505 S100ZQ8WXG8 99 aa10.77□□□□□ -0.69
CLN3-208ENST00000561505 SGK494Q96LW2 274 aa10.77□□□□□ -0.69
CLN3-208ENST00000561505 CHAC1Q9BUX1 264 aa10.77□□□□□ -0.69
CLN3-208ENST00000561505 SMIM3Q9BZL3 60 aa10.77□□□□□ -0.69
CLN3-208ENST00000561505 Q9UF83 564 aa10.77□□□□□ -0.69
CLN3-208ENST00000561505 A8MWV9 139 aa10.76□□□□□ -0.69
CLN3-208ENST00000561505 FLI1Q01543 452 aaPredicted RBP10.76□□□□□ -0.69
CLN3-208ENST00000561505 ATRAIDQ6UW56 229 aa10.76□□□□□ -0.69
CLN3-208ENST00000561505 CYB561D1Q8N8Q1 229 aa10.76□□□□□ -0.69
CLN3-208ENST00000561505 OR10G9Q8NGN4 311 aa10.76□□□□□ -0.69
CLN3-208ENST00000561505 OR10G7Q8NGN6 311 aa10.76□□□□□ -0.69
CLN3-208ENST00000561505 ENKURQ8TC29 256 aa10.76□□□□□ -0.69
CLN3-208ENST00000561505 IGKV3D-20A0A0C4DH25 116 aa10.75□□□□□ -0.69
CLN3-208ENST00000561505 UPK1BO75841 260 aa10.75□□□□□ -0.69
CLN3-208ENST00000561505 ARL14EPLP0DKL9 152 aa10.75□□□□□ -0.69
CLN3-208ENST00000561505 SMUG1Q53HV7 270 aa10.75□□□□□ -0.69
CLN3-208ENST00000561505 DNLZQ5SXM8 178 aa10.75□□□□□ -0.69
CLN3-208ENST00000561505 Q8N976 141 aa10.75□□□□□ -0.69
CLN3-208ENST00000561505 BAALCQ8WXS3 180 aa10.75□□□□□ -0.69
CLN3-208ENST00000561505 EPDR1Q9UM22 224 aa10.75□□□□□ -0.69
CLN3-208ENST00000561505 GGTLC3B5MD39 225 aa10.74□□□□□ -0.69
CLN3-208ENST00000561505 K7EQM0 130 aa10.74□□□□□ -0.69
CLN3-208ENST00000561505 LECT2O14960 151 aa10.74□□□□□ -0.69
CLN3-208ENST00000561505 FGF8P55075 233 aaPredicted RBP10.74□□□□□ -0.69
CLN3-208ENST00000561505 SAPCD1Q5SSQ6 148 aa10.74□□□□□ -0.69
CLN3-208ENST00000561505 NIT1Q86X76 327 aa10.74□□□□□ -0.69
CLN3-208ENST00000561505 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.73□□□□□ -0.69
CLN3-208ENST00000561505 GAGE12JA6NER3 117 aa10.73□□□□□ -0.69
CLN3-208ENST00000561505 HMGB3O15347 200 aaKnown RBP10.73□□□□□ -0.69
CLN3-208ENST00000561505 GCHFRP30047 84 aa10.73□□□□□ -0.69
CLN3-208ENST00000561505 CDC34P49427 236 aaPredicted RBP10.73□□□□□ -0.69
CLN3-208ENST00000561505 GAGE1Q13065 139 aa10.73□□□□□ -0.69
CLN3-208ENST00000561505 GAGE4Q13068 117 aa10.73□□□□□ -0.69
CLN3-208ENST00000561505 GAGE5Q13069 117 aa10.73□□□□□ -0.69
CLN3-208ENST00000561505 GAGE13Q4V321 117 aa10.73□□□□□ -0.69
CLN3-208ENST00000561505 RAB24Q969Q5 203 aa10.73□□□□□ -0.69
CLN3-208ENST00000561505 IL36BQ9NZH7 164 aa10.73□□□□□ -0.69
CLN3-208ENST00000561505 SUMO1P63165 101 aaKnown RBP10.72□□□□□ -0.69
CLN3-208ENST00000561505 LINC01620Q4KN68 170 aa10.72□□□□□ -0.69
CLN3-208ENST00000561505 COX8CQ7Z4L0 72 aa10.72□□□□□ -0.69
CLN3-208ENST00000561505 CIRBP-AS1Q8TBR5 109 aa10.72□□□□□ -0.69
CLN3-208ENST00000561505 RMI2Q96E14 147 aa10.72□□□□□ -0.69
CLN3-208ENST00000561505 PSMG3Q9BT73 122 aaPredicted RBP10.72□□□□□ -0.69
CLN3-208ENST00000561505 CHCHD7Q9BUK0 85 aa10.72□□□□□ -0.69
CLN3-208ENST00000561505 SAMD10Q9BYL1 202 aa10.72□□□□□ -0.69
CLN3-208ENST00000561505 PKHD1L1Q86WI1 4243 aa10.72□□□□□ -0.69
CLN3-208ENST00000561505 UBR4Q5T4S7 5183 aa10.71□□□□□ -0.69
CLN3-208ENST00000561505 IGLV2-8P01709 118 aa10.71□□□□□ -0.69
CLN3-208ENST00000561505 SEC11BP0C7V7 166 aa10.71□□□□□ -0.69
CLN3-208ENST00000561505 C14orf178Q8N769 122 aaPredicted RBP10.71□□□□□ -0.69
CLN3-208ENST00000561505 DNAJC30Q96LL9 226 aa10.71□□□□□ -0.69
CLN3-208ENST00000561505 JPT2Q9H910 190 aa10.71□□□□□ -0.69
CLN3-208ENST00000561505 RBFOX3A6NFN3 312 aa10.7□□□□□ -0.7
CLN3-208ENST00000561505 FABP5P3A8MUU1 101 aa10.7□□□□□ -0.7
CLN3-208ENST00000561505 SERF2P84101 59 aa10.7□□□□□ -0.7
CLN3-208ENST00000561505 ZFP69Q49AA0 526 aa10.7□□□□□ -0.7
CLN3-208ENST00000561505 PRNTQ86SH4 94 aa10.7□□□□□ -0.7
CLN3-208ENST00000561505 SYT8Q8NBV8 401 aa10.7□□□□□ -0.7
CLN3-208ENST00000561505 OR2T35Q8NGX2 323 aa10.7□□□□□ -0.7
CLN3-208ENST00000561505 TMEM167BQ9NRX6 74 aa10.7□□□□□ -0.7
CLN3-208ENST00000561505 A0A1W2PRE2 83 aa10.69□□□□□ -0.7
CLN3-208ENST00000561505 RHODO00212 210 aa10.69□□□□□ -0.7
CLN3-208ENST00000561505 DMRTA1Q5VZB9 504 aa10.69□□□□□ -0.7
CLN3-208ENST00000561505 MBP02144 154 aa10.68□□□□□ -0.7
CLN3-208ENST00000561505 ASIPP42127 132 aa10.68□□□□□ -0.7
CLN3-208ENST00000561505 CRIP1P50238 77 aa10.68□□□□□ -0.7
CLN3-208ENST00000561505 LGALSLQ3ZCW2 172 aaPredicted RBP10.68□□□□□ -0.7
CLN3-208ENST00000561505 SSNA1O43805 119 aa10.67□□□□□ -0.7
CLN3-208ENST00000561505 CXorf1O96002 111 aa10.67□□□□□ -0.7
CLN3-208ENST00000561505 ATP6V0CP27449 155 aa10.67□□□□□ -0.7
CLN3-208ENST00000561505 ELOBQ15370 118 aa10.67□□□□□ -0.7
CLN3-208ENST00000561505 SFRP2Q96HF1 295 aa10.67□□□□□ -0.7
CLN3-208ENST00000561505 KLK12Q9UKR0 248 aa10.67□□□□□ -0.7
CLN3-208ENST00000561505 TNFSF18Q9UNG2 199 aa10.67□□□□□ -0.7
CLN3-208ENST00000561505 ARL2-SNX15V9GYD0 113 aa10.67□□□□□ -0.7
CLN3-208ENST00000561505 IGKV2D-24A0A075B6R9 120 aa10.66□□□□□ -0.7
CLN3-208ENST00000561505 TRBV10-1A0A0K0K1A3 114 aa10.66□□□□□ -0.7
CLN3-208ENST00000561505 KRBOX1C9JBD0 128 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms