RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 BAGE2Q86Y30 109 aa6.47□□□□□ -1.37
SYNE2-224ENST00000557024 C1orf158Q8N1D5 194 aa6.47□□□□□ -1.37
SYNE2-224ENST00000557024 LINC00479Q96M42 142 aa6.47□□□□□ -1.37
SYNE2-224ENST00000557024 SMIM7Q9BQ49 75 aa6.47□□□□□ -1.37
SYNE2-224ENST00000557024 AGPAT4-IT1Q9H0P7 198 aa6.47□□□□□ -1.37
SYNE2-224ENST00000557024 PARLQ9H300 379 aa6.47□□□□□ -1.37
SYNE2-224ENST00000557024 Q9H8V8 135 aa6.47□□□□□ -1.37
SYNE2-224ENST00000557024 ZNF492Q9P255 531 aa6.47□□□□□ -1.37
SYNE2-224ENST00000557024 C9orf118A6NHY6 69 aa6.46□□□□□ -1.38
SYNE2-224ENST00000557024 GPX1P07203 203 aa6.46□□□□□ -1.38
SYNE2-224ENST00000557024 CT45A10P0DMU9 189 aa6.46□□□□□ -1.38
SYNE2-224ENST00000557024 DEFB130BP0DP73 79 aa6.46□□□□□ -1.38
SYNE2-224ENST00000557024 DEFB130AP0DP74 79 aa6.46□□□□□ -1.38
SYNE2-224ENST00000557024 RPL35P42766 123 aaKnown RBP6.46□□□□□ -1.38
SYNE2-224ENST00000557024 GNG4P50150 75 aa6.46□□□□□ -1.38
SYNE2-224ENST00000557024 FAT1Q14517 4588 aa6.46□□□□□ -1.38
SYNE2-224ENST00000557024 FAM74A3Q4VXF1 159 aa6.46□□□□□ -1.38
SYNE2-224ENST00000557024 Q8TAT8 98 aa6.46□□□□□ -1.38
SYNE2-224ENST00000557024 BIN3Q9NQY0 253 aa6.46□□□□□ -1.38
SYNE2-224ENST00000557024 ZFP30Q9Y2G7 519 aa6.46□□□□□ -1.38
SYNE2-224ENST00000557024 LENEPQ9Y5L5 61 aa6.46□□□□□ -1.38
SYNE2-224ENST00000557024 F8W036 122 aa6.45□□□□□ -1.38
SYNE2-224ENST00000557024 PRM2P04554 102 aa6.45□□□□□ -1.38
SYNE2-224ENST00000557024 SFTA3P0C7M3 94 aa6.45□□□□□ -1.38
SYNE2-224ENST00000557024 MGST1P10620 155 aaKnown RBP6.45□□□□□ -1.38
SYNE2-224ENST00000557024 CDKN1BP46527 198 aa6.45□□□□□ -1.38
SYNE2-224ENST00000557024 SPINK13Q1W4C9 94 aa6.45□□□□□ -1.38
SYNE2-224ENST00000557024 SMUG1Q53HV7 270 aa6.45□□□□□ -1.38
SYNE2-224ENST00000557024 Q86TA4 180 aa6.45□□□□□ -1.38
SYNE2-224ENST00000557024 EIF4E3Q8N5X7 224 aaKnown RBP6.45□□□□□ -1.38
SYNE2-224ENST00000557024 ODF3Q96PU9 254 aa6.45□□□□□ -1.38
SYNE2-224ENST00000557024 DERL1Q9BUN8 251 aa6.45□□□□□ -1.38
SYNE2-224ENST00000557024 TRBV7-9A0A0J9YWB2 115 aa6.44□□□□□ -1.38
SYNE2-224ENST00000557024 TRBV6-1A0A0K0K1D8 114 aa6.44□□□□□ -1.38
SYNE2-224ENST00000557024 C9JCJ5 164 aa6.44□□□□□ -1.38
SYNE2-224ENST00000557024 C9JQL5 133 aa6.44□□□□□ -1.38
SYNE2-224ENST00000557024 M0R2Z0 102 aa6.44□□□□□ -1.38
SYNE2-224ENST00000557024 KRTAP10-1P60331 282 aa6.44□□□□□ -1.38
SYNE2-224ENST00000557024 TMEM241Q24JQ0 296 aa6.44□□□□□ -1.38
SYNE2-224ENST00000557024 CENPWQ5EE01 88 aa6.44□□□□□ -1.38
SYNE2-224ENST00000557024 TMEM183AQ8IXX5 376 aa6.44□□□□□ -1.38
SYNE2-224ENST00000557024 SLC7A5P1Q8MH63 180 aa6.44□□□□□ -1.38
SYNE2-224ENST00000557024 NHLRC2Q8NBF2 726 aa6.44□□□□□ -1.38
SYNE2-224ENST00000557024 DAZAP1Q96EP5 407 aaKnown RBP6.44□□□□□ -1.38
SYNE2-224ENST00000557024 C8orf49Q96NF6 230 aa6.44□□□□□ -1.38
SYNE2-224ENST00000557024 TMEM208Q9BTX3 173 aa6.44□□□□□ -1.38
SYNE2-224ENST00000557024 C1orf43Q9BWL3 253 aa6.44□□□□□ -1.38
SYNE2-224ENST00000557024 KLF12Q9Y4X4 402 aa6.44□□□□□ -1.38
SYNE2-224ENST00000557024 TRAV12-2A0A075B6T6 113 aa6.43□□□□□ -1.38
SYNE2-224ENST00000557024 TMEM218A2RU14 115 aa6.43□□□□□ -1.38
SYNE2-224ENST00000557024 C7orf71A4D174 169 aa6.43□□□□□ -1.38
SYNE2-224ENST00000557024 LYRM9A8MSI8 78 aa6.43□□□□□ -1.38
SYNE2-224ENST00000557024 ZNF705GA8MUZ8 300 aaPredicted RBP6.43□□□□□ -1.38
SYNE2-224ENST00000557024 GCGP01275 180 aa6.43□□□□□ -1.38
SYNE2-224ENST00000557024 INSP01308 110 aa6.43□□□□□ -1.38
SYNE2-224ENST00000557024 LTAP01374 205 aa6.43□□□□□ -1.38
SYNE2-224ENST00000557024 IGLV2-11P01706 119 aa6.43□□□□□ -1.38
SYNE2-224ENST00000557024 RNASE4P34096 147 aaKnown RBP6.43□□□□□ -1.38
SYNE2-224ENST00000557024 HAMPP81172 84 aa6.43□□□□□ -1.38
SYNE2-224ENST00000557024 GAGE13Q4V321 117 aa6.43□□□□□ -1.38
SYNE2-224ENST00000557024 PRR27Q6MZM9 219 aa6.43□□□□□ -1.38
SYNE2-224ENST00000557024 Q6ZSN1 163 aa6.43□□□□□ -1.38
SYNE2-224ENST00000557024 SMIM12Q96EX1 92 aa6.43□□□□□ -1.38
SYNE2-224ENST00000557024 NAT8Q9UHE5 227 aa6.43□□□□□ -1.38
SYNE2-224ENST00000557024 TRAV21A0A0B4J279 112 aa6.42□□□□□ -1.38
SYNE2-224ENST00000557024 A8MTW9 85 aa6.42□□□□□ -1.38
SYNE2-224ENST00000557024 FABP5P3A8MUU1 101 aa6.42□□□□□ -1.38
SYNE2-224ENST00000557024 ATP5G1P05496 136 aa6.42□□□□□ -1.38
SYNE2-224ENST00000557024 CRISP2P16562 243 aa6.42□□□□□ -1.38
SYNE2-224ENST00000557024 LINC00315P59091 139 aa6.42□□□□□ -1.38
SYNE2-224ENST00000557024 ADIRFQ15847 76 aa6.42□□□□□ -1.38
SYNE2-224ENST00000557024 AMTNQ6UX39 209 aa6.42□□□□□ -1.38
SYNE2-224ENST00000557024 Q6ZRN7 208 aaPredicted RBP6.42□□□□□ -1.38
SYNE2-224ENST00000557024 SYT8Q8NBV8 401 aa6.42□□□□□ -1.38
SYNE2-224ENST00000557024 OCC1Q8TAD7 63 aa6.42□□□□□ -1.38
SYNE2-224ENST00000557024 TVP23CQ96ET8 276 aa6.42□□□□□ -1.38
SYNE2-224ENST00000557024 IGF2BP2-AS1Q96M15 143 aa6.42□□□□□ -1.38
SYNE2-224ENST00000557024 SEC11CQ9BY50 192 aa6.42□□□□□ -1.38
SYNE2-224ENST00000557024 LY96Q9Y6Y9 160 aa6.42□□□□□ -1.38
SYNE2-224ENST00000557024 TRAV12-3A0A0B4J271 114 aa6.41□□□□□ -1.38
SYNE2-224ENST00000557024 A0A1W2PPQ1 181 aa6.41□□□□□ -1.38
SYNE2-224ENST00000557024 PGPEP1LA6NFU8 196 aa6.41□□□□□ -1.38
SYNE2-224ENST00000557024 KRBOX1C9JBD0 128 aa6.41□□□□□ -1.38
SYNE2-224ENST00000557024 M0R036 132 aa6.41□□□□□ -1.38
SYNE2-224ENST00000557024 BTN1A1Q13410 526 aa6.41□□□□□ -1.38
SYNE2-224ENST00000557024 FAM162BQ5T6X4 162 aa6.41□□□□□ -1.38
SYNE2-224ENST00000557024 ZFAND2AQ8N6M9 145 aa6.41□□□□□ -1.38
SYNE2-224ENST00000557024 ZC2HC1AQ96GY0 325 aa6.41□□□□□ -1.38
SYNE2-224ENST00000557024 FAM19A4Q96LR4 140 aa6.41□□□□□ -1.38
SYNE2-224ENST00000557024 LINC01587Q99440 93 aa6.41□□□□□ -1.38
SYNE2-224ENST00000557024 C20orf144Q9BQM9 153 aa6.41□□□□□ -1.38
SYNE2-224ENST00000557024 SDF2L1Q9HCN8 221 aa6.41□□□□□ -1.38
SYNE2-224ENST00000557024 NAGKQ9UJ70 344 aa6.41□□□□□ -1.38
SYNE2-224ENST00000557024 PLAC8L1A1L4L8 177 aa6.4□□□□□ -1.38
SYNE2-224ENST00000557024 CBY3A6NI87 242 aa6.4□□□□□ -1.38
SYNE2-224ENST00000557024 KLLNB2CW77 178 aa6.4□□□□□ -1.38
SYNE2-224ENST00000557024 ORM1P02763 201 aa6.4□□□□□ -1.38
SYNE2-224ENST00000557024 PFN1P07737 140 aaKnown RBP6.4□□□□□ -1.38
SYNE2-224ENST00000557024 HTN1P15515 57 aa6.4□□□□□ -1.38
SYNE2-224ENST00000557024 ERVFC1-1P60608 527 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms