RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 COX8CQ7Z4L0 72 aa7.97□□□□□ -1.13
CCDC88C-208ENST00000554165 SLC51BQ86UW2 128 aa7.97□□□□□ -1.13
CCDC88C-208ENST00000554165 DERL1Q9BUN8 251 aa7.97□□□□□ -1.13
CCDC88C-208ENST00000554165 Q9H8V8 135 aa7.97□□□□□ -1.13
CCDC88C-208ENST00000554165 JPT2Q9H910 190 aa7.97□□□□□ -1.13
CCDC88C-208ENST00000554165 MRPS16Q9Y3D3 137 aaKnown RBP7.97□□□□□ -1.13
CCDC88C-208ENST00000554165 TRAV1-1A0A0B4J248 108 aa7.96□□□□□ -1.14
CCDC88C-208ENST00000554165 KRBOX1C9JBD0 128 aa7.96□□□□□ -1.14
CCDC88C-208ENST00000554165 RS1O15537 224 aa7.96□□□□□ -1.14
CCDC88C-208ENST00000554165 GYPEP15421 78 aa7.96□□□□□ -1.14
CCDC88C-208ENST00000554165 ZNF674Q2M3X9 581 aa7.96□□□□□ -1.14
CCDC88C-208ENST00000554165 FAM162BQ5T6X4 162 aa7.96□□□□□ -1.14
CCDC88C-208ENST00000554165 A0A1B0GVY2 172 aa7.95□□□□□ -1.14
CCDC88C-208ENST00000554165 PRSS29PA6NIE9 313 aa7.95□□□□□ -1.14
CCDC88C-208ENST00000554165 H3BVH4 76 aa7.95□□□□□ -1.14
CCDC88C-208ENST00000554165 K7EQD1 137 aa7.95□□□□□ -1.14
CCDC88C-208ENST00000554165 GATA1P15976 413 aaPredicted RBP7.95□□□□□ -1.14
CCDC88C-208ENST00000554165 S100A4P26447 101 aaKnown RBP7.95□□□□□ -1.14
CCDC88C-208ENST00000554165 ASIPP42127 132 aa7.95□□□□□ -1.14
CCDC88C-208ENST00000554165 RAB5CP51148 216 aa7.95□□□□□ -1.14
CCDC88C-208ENST00000554165 RPL19P84098 196 aaKnown RBP7.95□□□□□ -1.14
CCDC88C-208ENST00000554165 SLAQ13239 276 aa7.95□□□□□ -1.14
CCDC88C-208ENST00000554165 C1orf134Q5TEV5 83 aa7.95□□□□□ -1.14
CCDC88C-208ENST00000554165 LYPD5Q6UWN5 251 aa7.95□□□□□ -1.14
CCDC88C-208ENST00000554165 Q6ZSN1 163 aa7.95□□□□□ -1.14
CCDC88C-208ENST00000554165 TCEAL7Q9BRU2 100 aa7.95□□□□□ -1.14
CCDC88C-208ENST00000554165 SAMD10Q9BYL1 202 aa7.95□□□□□ -1.14
CCDC88C-208ENST00000554165 ARMS2P0C7Q2 107 aa7.94□□□□□ -1.14
CCDC88C-208ENST00000554165 MRPL23Q16540 153 aaKnown RBP7.94□□□□□ -1.14
CCDC88C-208ENST00000554165 EIF5AL1Q6IS14 154 aaKnown RBP7.94□□□□□ -1.14
CCDC88C-208ENST00000554165 ALKAL2Q6UX46 152 aa7.94□□□□□ -1.14
CCDC88C-208ENST00000554165 BAGE2Q86Y30 109 aa7.94□□□□□ -1.14
CCDC88C-208ENST00000554165 SLC25A29Q8N8R3 303 aa7.94□□□□□ -1.14
CCDC88C-208ENST00000554165 UPK3BQ9BT76 320 aa7.94□□□□□ -1.14
CCDC88C-208ENST00000554165 MLST8Q9BVC4 326 aa7.94□□□□□ -1.14
CCDC88C-208ENST00000554165 Q9UF83 564 aa7.94□□□□□ -1.14
CCDC88C-208ENST00000554165 NXPH4O95158 308 aa7.93□□□□□ -1.14
CCDC88C-208ENST00000554165 RPL35P42766 123 aaKnown RBP7.93□□□□□ -1.14
CCDC88C-208ENST00000554165 TNP2Q05952 138 aa7.93□□□□□ -1.14
CCDC88C-208ENST00000554165 LINC01559Q495D7 138 aa7.93□□□□□ -1.14
CCDC88C-208ENST00000554165 LINC00336Q6ZUF6 198 aa7.93□□□□□ -1.14
CCDC88C-208ENST00000554165 NEGR1Q7Z3B1 354 aa7.93□□□□□ -1.14
CCDC88C-208ENST00000554165 PTH2Q96A98 100 aa7.93□□□□□ -1.14
CCDC88C-208ENST00000554165 MANBALQ9NQG1 85 aa7.93□□□□□ -1.14
CCDC88C-208ENST00000554165 PKD1P98161 4303 aa7.92□□□□□ -1.14
CCDC88C-208ENST00000554165 KIAA1109Q2LD37 5005 aa7.92□□□□□ -1.14
CCDC88C-208ENST00000554165 RAB19A4D1S5 217 aa7.92□□□□□ -1.14
CCDC88C-208ENST00000554165 S100A9P06702 114 aaKnown RBP7.92□□□□□ -1.14
CCDC88C-208ENST00000554165 SRIP30626 198 aa7.92□□□□□ -1.14
CCDC88C-208ENST00000554165 PRR27Q6MZM9 219 aa7.92□□□□□ -1.14
CCDC88C-208ENST00000554165 C6orf223Q8N319 242 aa7.92□□□□□ -1.14
CCDC88C-208ENST00000554165 C11orf52Q96A22 123 aa7.92□□□□□ -1.14
CCDC88C-208ENST00000554165 PARLQ9H300 379 aa7.92□□□□□ -1.14
CCDC88C-208ENST00000554165 IL36BQ9NZH7 164 aa7.92□□□□□ -1.14
CCDC88C-208ENST00000554165 PKHD1P08F94 4074 aa7.92□□□□□ -1.14
CCDC88C-208ENST00000554165 MUC21A0A0G2JKD1 596 aa7.91□□□□□ -1.14
CCDC88C-208ENST00000554165 MUC21A0A140T8X8 626 aa7.91□□□□□ -1.14
CCDC88C-208ENST00000554165 M0R381 172 aa7.91□□□□□ -1.14
CCDC88C-208ENST00000554165 IGLV2-8P01709 118 aa7.91□□□□□ -1.14
CCDC88C-208ENST00000554165 CENPWQ5EE01 88 aa7.91□□□□□ -1.14
CCDC88C-208ENST00000554165 DNLZQ5SXM8 178 aa7.91□□□□□ -1.14
CCDC88C-208ENST00000554165 UFSP1Q6NVU6 142 aa7.91□□□□□ -1.14
CCDC88C-208ENST00000554165 WFDC10BQ8IUB3 73 aa7.91□□□□□ -1.14
CCDC88C-208ENST00000554165 PCNPQ8WW12 178 aaKnown RBP7.91□□□□□ -1.14
CCDC88C-208ENST00000554165 SCRT2Q9NQ03 307 aa7.91□□□□□ -1.14
CCDC88C-208ENST00000554165 TNFRSF18Q9Y5U5 241 aa7.91□□□□□ -1.14
CCDC88C-208ENST00000554165 TRBV20OR9-2A0A075B6H5 130 aa7.9□□□□□ -1.14
CCDC88C-208ENST00000554165 A0A087WWL8 130 aa7.9□□□□□ -1.14
CCDC88C-208ENST00000554165 BCL2P10415 239 aa7.9□□□□□ -1.14
CCDC88C-208ENST00000554165 MEF2BQ02080 365 aaPredicted RBP7.9□□□□□ -1.14
CCDC88C-208ENST00000554165 C14orf178Q8N769 122 aaPredicted RBP7.9□□□□□ -1.14
CCDC88C-208ENST00000554165 TRBV6-4A0A1B0GX49 114 aa7.89□□□□□ -1.15
CCDC88C-208ENST00000554165 TEX46H3BTG2 121 aa7.89□□□□□ -1.15
CCDC88C-208ENST00000554165 SIVA1O15304 175 aa7.89□□□□□ -1.15
CCDC88C-208ENST00000554165 SSTP61278 116 aa7.89□□□□□ -1.15
CCDC88C-208ENST00000554165 SOHLH1Q5JUK2 328 aa7.89□□□□□ -1.15
CCDC88C-208ENST00000554165 OR10AG1Q8NH19 301 aa7.89□□□□□ -1.15
CCDC88C-208ENST00000554165 TXNDC17Q9BRA2 123 aa7.89□□□□□ -1.15
CCDC88C-208ENST00000554165 PHLDA3Q9Y5J5 127 aa7.89□□□□□ -1.15
CCDC88C-208ENST00000554165 DNAH11Q96DT5 4516 aa7.89□□□□□ -1.15
CCDC88C-208ENST00000554165 GAGE12JA6NER3 117 aa7.88□□□□□ -1.15
CCDC88C-208ENST00000554165 A8MWV9 139 aa7.88□□□□□ -1.15
CCDC88C-208ENST00000554165 IFNA1P01562 189 aa7.88□□□□□ -1.15
CCDC88C-208ENST00000554165 CRYGDP07320 174 aa7.88□□□□□ -1.15
CCDC88C-208ENST00000554165 GZMBP10144 247 aa7.88□□□□□ -1.15
CCDC88C-208ENST00000554165 MGST1P10620 155 aaKnown RBP7.88□□□□□ -1.15
CCDC88C-208ENST00000554165 GAGE1Q13065 139 aa7.88□□□□□ -1.15
CCDC88C-208ENST00000554165 GAGE4Q13068 117 aa7.88□□□□□ -1.15
CCDC88C-208ENST00000554165 GAGE5Q13069 117 aa7.88□□□□□ -1.15
CCDC88C-208ENST00000554165 RHOHQ15669 191 aa7.88□□□□□ -1.15
CCDC88C-208ENST00000554165 GAGE13Q4V321 117 aa7.88□□□□□ -1.15
CCDC88C-208ENST00000554165 FAM74A4Q5TZK3 123 aa7.88□□□□□ -1.15
CCDC88C-208ENST00000554165 PRADC1Q9BSG0 188 aa7.88□□□□□ -1.15
CCDC88C-208ENST00000554165 MED9Q9NWA0 146 aa7.88□□□□□ -1.15
CCDC88C-208ENST00000554165 VAX2Q9UIW0 290 aa7.88□□□□□ -1.15
CCDC88C-208ENST00000554165 DYNC1H1Q14204 4646 aaKnown RBP7.88□□□□□ -1.15
CCDC88C-208ENST00000554165 LINC00315P59091 139 aa7.87□□□□□ -1.15
CCDC88C-208ENST00000554165 TTC32Q5I0X7 151 aa7.87□□□□□ -1.15
CCDC88C-208ENST00000554165 PIK3CD-AS1Q5SR53 167 aa7.87□□□□□ -1.15
CCDC88C-208ENST00000554165 ZFP2Q6ZN57 461 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms