RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 GNG4P50150 75 aa10.02□□□□□ -0.81
CCDC88C-207ENST00000554051 NKX2-5P52952 324 aaPredicted RBP10.02□□□□□ -0.81
CCDC88C-207ENST00000554051 CRYBA4P53673 196 aa10.02□□□□□ -0.81
CCDC88C-207ENST00000554051 FHL2Q14192 279 aa10.02□□□□□ -0.81
CCDC88C-207ENST00000554051 VSIG2Q96IQ7 327 aa10.02□□□□□ -0.81
CCDC88C-207ENST00000554051 M0R036 132 aa10.01□□□□□ -0.81
CCDC88C-207ENST00000554051 RHODO00212 210 aa10.01□□□□□ -0.81
CCDC88C-207ENST00000554051 NDUFS6O75380 124 aaKnown RBP10.01□□□□□ -0.81
CCDC88C-207ENST00000554051 CENPWQ5EE01 88 aa10.01□□□□□ -0.81
CCDC88C-207ENST00000554051 ZNF506Q5JVG8 444 aa10.01□□□□□ -0.81
CCDC88C-207ENST00000554051 LYPD6BQ8NI32 183 aa10.01□□□□□ -0.81
CCDC88C-207ENST00000554051 ZNF479Q96JC4 524 aa10.01□□□□□ -0.81
CCDC88C-207ENST00000554051 UPK3BQ9BT76 320 aa10.01□□□□□ -0.81
CCDC88C-207ENST00000554051 TMEM250H0YL14 139 aa10□□□□□ -0.81
CCDC88C-207ENST00000554051 H3BVH4 76 aa10□□□□□ -0.81
CCDC88C-207ENST00000554051 RS1O15537 224 aa10□□□□□ -0.81
CCDC88C-207ENST00000554051 MGST1P10620 155 aaKnown RBP10□□□□□ -0.81
CCDC88C-207ENST00000554051 SRIP30626 198 aa10□□□□□ -0.81
CCDC88C-207ENST00000554051 CRIP1P50238 77 aa10□□□□□ -0.81
CCDC88C-207ENST00000554051 TTC32Q5I0X7 151 aa10□□□□□ -0.81
CCDC88C-207ENST00000554051 SOHLH1Q5JUK2 328 aa10□□□□□ -0.81
CCDC88C-207ENST00000554051 ZFP2Q6ZN57 461 aa10□□□□□ -0.81
CCDC88C-207ENST00000554051 ZFP82Q8N141 532 aa10□□□□□ -0.81
CCDC88C-207ENST00000554051 NHLRC2Q8NBF2 726 aa10□□□□□ -0.81
CCDC88C-207ENST00000554051 MED9Q9NWA0 146 aa10□□□□□ -0.81
CCDC88C-207ENST00000554051 MRPS16Q9Y3D3 137 aaKnown RBP10□□□□□ -0.81
CCDC88C-207ENST00000554051 PHLDA3Q9Y5J5 127 aa10□□□□□ -0.81
CCDC88C-207ENST00000554051 A0A096LPF7 62 aa9.99□□□□□ -0.81
CCDC88C-207ENST00000554051 SFTA3P0C7M3 94 aa9.99□□□□□ -0.81
CCDC88C-207ENST00000554051 RPS20P60866 119 aaKnown RBP9.99□□□□□ -0.81
CCDC88C-207ENST00000554051 RHOHQ15669 191 aa9.99□□□□□ -0.81
CCDC88C-207ENST00000554051 CFAP126Q5VTH2 177 aa9.99□□□□□ -0.81
CCDC88C-207ENST00000554051 NEGR1Q7Z3B1 354 aa9.99□□□□□ -0.81
CCDC88C-207ENST00000554051 PRADC1Q9BSG0 188 aa9.99□□□□□ -0.81
CCDC88C-207ENST00000554051 DERL1Q9BUN8 251 aa9.99□□□□□ -0.81
CCDC88C-207ENST00000554051 LINC00588Q9Y4M8 146 aa9.99□□□□□ -0.81
CCDC88C-207ENST00000554051 TRBV6-4A0A1B0GX49 114 aa9.98□□□□□ -0.81
CCDC88C-207ENST00000554051 XKRY2A2RUG3 117 aa9.98□□□□□ -0.81
CCDC88C-207ENST00000554051 ARMS2P0C7Q2 107 aa9.98□□□□□ -0.81
CCDC88C-207ENST00000554051 GATA1P15976 413 aaPredicted RBP9.98□□□□□ -0.81
CCDC88C-207ENST00000554051 PRR27Q6MZM9 219 aa9.98□□□□□ -0.81
CCDC88C-207ENST00000554051 LINC00336Q6ZUF6 198 aa9.98□□□□□ -0.81
CCDC88C-207ENST00000554051 ZNRF2Q8NHG8 242 aa9.98□□□□□ -0.81
CCDC88C-207ENST00000554051 DAZAP1Q96EP5 407 aaKnown RBP9.98□□□□□ -0.81
CCDC88C-207ENST00000554051 SCRT2Q9NQ03 307 aa9.98□□□□□ -0.81
CCDC88C-207ENST00000554051 HYDINQ4G0P3 5121 aa9.97□□□□□ -0.81
CCDC88C-207ENST00000554051 A0A1W2PPQ1 181 aa9.97□□□□□ -0.81
CCDC88C-207ENST00000554051 RBFOX3A6NFN3 312 aa9.97□□□□□ -0.81
CCDC88C-207ENST00000554051 PGPEP1LA6NFU8 196 aa9.97□□□□□ -0.81
CCDC88C-207ENST00000554051 BTF3P20290 206 aaKnown RBP9.97□□□□□ -0.81
CCDC88C-207ENST00000554051 PARLQ9H300 379 aa9.97□□□□□ -0.81
CCDC88C-207ENST00000554051 NACAE9PAV3 2078 aa9.96□□□□□ -0.81
CCDC88C-207ENST00000554051 GYPEP15421 78 aa9.96□□□□□ -0.82
CCDC88C-207ENST00000554051 Q6ZR54 194 aa9.96□□□□□ -0.82
CCDC88C-207ENST00000554051 TMSB15BA0A087X1C1 80 aa9.95□□□□□ -0.82
CCDC88C-207ENST00000554051 GRIFINA4D1Z8 144 aa9.95□□□□□ -0.82
CCDC88C-207ENST00000554051 K7EQD1 137 aa9.95□□□□□ -0.82
CCDC88C-207ENST00000554051 NXPH4O95158 308 aa9.95□□□□□ -0.82
CCDC88C-207ENST00000554051 OR5AL1P0C617 328 aa9.95□□□□□ -0.82
CCDC88C-207ENST00000554051 TIRAPP58753 221 aa9.95□□□□□ -0.82
CCDC88C-207ENST00000554051 ESRGQ1W209 222 aa9.95□□□□□ -0.82
CCDC88C-207ENST00000554051 IGLV2-18A0A075B6J9 118 aa9.94□□□□□ -0.82
CCDC88C-207ENST00000554051 NBDYA0A0U1RRE5 68 aa9.94□□□□□ -0.82
CCDC88C-207ENST00000554051 K7EP13 123 aa9.94□□□□□ -0.82
CCDC88C-207ENST00000554051 M0R381 172 aa9.94□□□□□ -0.82
CCDC88C-207ENST00000554051 SNAI2O43623 268 aa9.94□□□□□ -0.82
CCDC88C-207ENST00000554051 P01737 135 aa9.94□□□□□ -0.82
CCDC88C-207ENST00000554051 FAM210AQ96ND0 272 aa9.94□□□□□ -0.82
CCDC88C-207ENST00000554051 EIF5A2Q9GZV4 153 aaKnown RBP9.94□□□□□ -0.82
CCDC88C-207ENST00000554051 DNAH6Q9C0G6 4158 aa9.93□□□□□ -0.82
CCDC88C-207ENST00000554051 C19orf71A6NCJ1 209 aa9.93□□□□□ -0.82
CCDC88C-207ENST00000554051 IGLV2-8P01709 118 aa9.93□□□□□ -0.82
CCDC88C-207ENST00000554051 TOR2AQ5JU69 321 aa9.93□□□□□ -0.82
CCDC88C-207ENST00000554051 TEX261Q6UWH6 196 aa9.93□□□□□ -0.82
CCDC88C-207ENST00000554051 SLC25A29Q8N8R3 303 aa9.93□□□□□ -0.82
CCDC88C-207ENST00000554051 SFRP2Q96HF1 295 aa9.93□□□□□ -0.82
CCDC88C-207ENST00000554051 SSBP4Q9BWG4 385 aaPredicted RBP9.93□□□□□ -0.82
CCDC88C-207ENST00000554051 Q9H8V8 135 aa9.93□□□□□ -0.82
CCDC88C-207ENST00000554051 LY96Q9Y6Y9 160 aa9.93□□□□□ -0.82
CCDC88C-207ENST00000554051 TRBV20OR9-2A0A075B6H5 130 aa9.92□□□□□ -0.82
CCDC88C-207ENST00000554051 RAB19A4D1S5 217 aa9.92□□□□□ -0.82
CCDC88C-207ENST00000554051 RPL19P84098 196 aaKnown RBP9.92□□□□□ -0.82
CCDC88C-207ENST00000554051 C1orf134Q5TEV5 83 aa9.92□□□□□ -0.82
CCDC88C-207ENST00000554051 SPANXN1Q5VSR9 72 aa9.92□□□□□ -0.82
CCDC88C-207ENST00000554051 DMRTA1Q5VZB9 504 aa9.92□□□□□ -0.82
CCDC88C-207ENST00000554051 OR2D3Q8NGH3 330 aa9.92□□□□□ -0.82
CCDC88C-207ENST00000554051 AP1S3Q96PC3 154 aa9.92□□□□□ -0.82
CCDC88C-207ENST00000554051 F2Z2F3 143 aa9.91□□□□□ -0.82
CCDC88C-207ENST00000554051 SIVA1O15304 175 aa9.91□□□□□ -0.82
CCDC88C-207ENST00000554051 CACNG7P62955 275 aa9.91□□□□□ -0.82
CCDC88C-207ENST00000554051 UFSP1Q6NVU6 142 aa9.91□□□□□ -0.82
CCDC88C-207ENST00000554051 LYPD5Q6UWN5 251 aa9.91□□□□□ -0.82
CCDC88C-207ENST00000554051 FER1L6-AS1Q8NA97 138 aa9.91□□□□□ -0.82
CCDC88C-207ENST00000554051 SMDT1Q9H4I9 107 aa9.91□□□□□ -0.82
CCDC88C-207ENST00000554051 IGHV3-73A0A0B4J1V6 119 aa9.9□□□□□ -0.82
CCDC88C-207ENST00000554051 TRBV10-1A0A0K0K1A3 114 aa9.9□□□□□ -0.82
CCDC88C-207ENST00000554051 M0R2N4 97 aa9.9□□□□□ -0.82
CCDC88C-207ENST00000554051 FAM74A4Q5TZK3 123 aa9.9□□□□□ -0.82
CCDC88C-207ENST00000554051 OR10AG1Q8NH19 301 aa9.9□□□□□ -0.82
CCDC88C-207ENST00000554051 VPS13DQ5THJ4 4388 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms