RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 ZFP69Q49AA0 526 aa8.53□□□□□ -1.04
PTCH1-221ENST00000550914 TOR2AQ5JU69 321 aa8.53□□□□□ -1.04
PTCH1-221ENST00000550914 ZNF506Q5JVG8 444 aa8.53□□□□□ -1.04
PTCH1-221ENST00000550914 ZFP2Q6ZN57 461 aa8.53□□□□□ -1.04
PTCH1-221ENST00000550914 WFDC1Q9HC57 220 aa8.53□□□□□ -1.04
PTCH1-221ENST00000550914 IGHV3-73A0A0B4J1V6 119 aa8.52□□□□□ -1.05
PTCH1-221ENST00000550914 PGPEP1LA6NFU8 196 aa8.52□□□□□ -1.05
PTCH1-221ENST00000550914 STAG3L2P0CL84 134 aa8.52□□□□□ -1.05
PTCH1-221ENST00000550914 STAG3L3P0CL85 134 aa8.52□□□□□ -1.05
PTCH1-221ENST00000550914 CDC34P49427 236 aaPredicted RBP8.52□□□□□ -1.05
PTCH1-221ENST00000550914 LINC01559Q495D7 138 aa8.52□□□□□ -1.05
PTCH1-221ENST00000550914 SMUG1Q53HV7 270 aa8.52□□□□□ -1.05
PTCH1-221ENST00000550914 OR2G3Q8NGZ4 309 aa8.52□□□□□ -1.05
PTCH1-221ENST00000550914 PSG8Q9UQ74 426 aa8.52□□□□□ -1.05
PTCH1-221ENST00000550914 COX11Q9Y6N1 276 aa8.52□□□□□ -1.05
PTCH1-221ENST00000550914 A0A087WWC5 75 aa8.51□□□□□ -1.05
PTCH1-221ENST00000550914 A8MWV9 139 aa8.51□□□□□ -1.05
PTCH1-221ENST00000550914 IGLV2-11P01706 119 aa8.51□□□□□ -1.05
PTCH1-221ENST00000550914 LINC00694P0DN24 101 aa8.51□□□□□ -1.05
PTCH1-221ENST00000550914 RNASE3P12724 160 aaKnown RBP8.51□□□□□ -1.05
PTCH1-221ENST00000550914 FLI1Q01543 452 aaPredicted RBP8.51□□□□□ -1.05
PTCH1-221ENST00000550914 IFITM3Q01628 133 aa8.51□□□□□ -1.05
PTCH1-221ENST00000550914 TMEM75Q8N9X5 138 aa8.51□□□□□ -1.05
PTCH1-221ENST00000550914 SGK494Q96LW2 274 aa8.51□□□□□ -1.05
PTCH1-221ENST00000550914 KRTAP29-1A8MX34 341 aaPredicted RBP8.5□□□□□ -1.05
PTCH1-221ENST00000550914 HMGB3O15347 200 aaKnown RBP8.5□□□□□ -1.05
PTCH1-221ENST00000550914 WFDC2Q14508 124 aa8.5□□□□□ -1.05
PTCH1-221ENST00000550914 SAPCD1Q5SSQ6 148 aa8.5□□□□□ -1.05
PTCH1-221ENST00000550914 CYB561D1Q8N8Q1 229 aa8.5□□□□□ -1.05
PTCH1-221ENST00000550914 PSMG3Q9BT73 122 aaPredicted RBP8.5□□□□□ -1.05
PTCH1-221ENST00000550914 PARLQ9H300 379 aa8.5□□□□□ -1.05
PTCH1-221ENST00000550914 GGTLC3B5MD39 225 aa8.49□□□□□ -1.05
PTCH1-221ENST00000550914 MBP02144 154 aa8.49□□□□□ -1.05
PTCH1-221ENST00000550914 SEC11BP0C7V7 166 aa8.49□□□□□ -1.05
PTCH1-221ENST00000550914 GCHFRP30047 84 aa8.49□□□□□ -1.05
PTCH1-221ENST00000550914 FGF8P55075 233 aaPredicted RBP8.49□□□□□ -1.05
PTCH1-221ENST00000550914 SERF2P84101 59 aa8.49□□□□□ -1.05
PTCH1-221ENST00000550914 LINC00528Q8N1L1 170 aa8.49□□□□□ -1.05
PTCH1-221ENST00000550914 DEFB104AQ8WTQ1 72 aa8.49□□□□□ -1.05
PTCH1-221ENST00000550914 RAB24Q969Q5 203 aa8.49□□□□□ -1.05
PTCH1-221ENST00000550914 LINC00479Q96M42 142 aa8.49□□□□□ -1.05
PTCH1-221ENST00000550914 TMEM167BQ9NRX6 74 aa8.49□□□□□ -1.05
PTCH1-221ENST00000550914 EPDR1Q9UM22 224 aa8.49□□□□□ -1.05
PTCH1-221ENST00000550914 CXorf1O96002 111 aa8.48□□□□□ -1.05
PTCH1-221ENST00000550914 S100A4P26447 101 aaKnown RBP8.48□□□□□ -1.05
PTCH1-221ENST00000550914 SUMO1P63165 101 aaKnown RBP8.48□□□□□ -1.05
PTCH1-221ENST00000550914 PRNTQ86SH4 94 aa8.48□□□□□ -1.05
PTCH1-221ENST00000550914 Q8N3U1 123 aa8.48□□□□□ -1.05
PTCH1-221ENST00000550914 RMI2Q96E14 147 aa8.48□□□□□ -1.05
PTCH1-221ENST00000550914 IGKV3D-20A0A0C4DH25 116 aa8.47□□□□□ -1.05
PTCH1-221ENST00000550914 GAGE12JA6NER3 117 aa8.47□□□□□ -1.05
PTCH1-221ENST00000550914 DEFA1P59665 94 aa8.47□□□□□ -1.05
PTCH1-221ENST00000550914 DEFA3P59666 94 aa8.47□□□□□ -1.05
PTCH1-221ENST00000550914 GAGE1Q13065 139 aa8.47□□□□□ -1.05
PTCH1-221ENST00000550914 GAGE4Q13068 117 aa8.47□□□□□ -1.05
PTCH1-221ENST00000550914 GAGE5Q13069 117 aa8.47□□□□□ -1.05
PTCH1-221ENST00000550914 GAGE13Q4V321 117 aa8.47□□□□□ -1.05
PTCH1-221ENST00000550914 C4orf48Q5BLP8 95 aa8.47□□□□□ -1.05
PTCH1-221ENST00000550914 UFSP1Q6NVU6 142 aa8.47□□□□□ -1.05
PTCH1-221ENST00000550914 DAZ4Q86SG3 579 aaKnown RBP8.47□□□□□ -1.05
PTCH1-221ENST00000550914 DAZ3Q9NR90 486 aaKnown RBP8.47□□□□□ -1.05
PTCH1-221ENST00000550914 IL36BQ9NZH7 164 aa8.47□□□□□ -1.05
PTCH1-221ENST00000550914 A0A1W2PRE2 83 aa8.46□□□□□ -1.06
PTCH1-221ENST00000550914 FABP5P3A8MUU1 101 aa8.46□□□□□ -1.06
PTCH1-221ENST00000550914 RHODO00212 210 aa8.46□□□□□ -1.06
PTCH1-221ENST00000550914 LECT2O14960 151 aa8.46□□□□□ -1.06
PTCH1-221ENST00000550914 ASIPP42127 132 aa8.46□□□□□ -1.06
PTCH1-221ENST00000550914 LGALSLQ3ZCW2 172 aaPredicted RBP8.46□□□□□ -1.06
PTCH1-221ENST00000550914 Q8N976 141 aa8.46□□□□□ -1.06
PTCH1-221ENST00000550914 HSD17B11Q8NBQ5 300 aa8.46□□□□□ -1.06
PTCH1-221ENST00000550914 TNFSF18Q9UNG2 199 aa8.46□□□□□ -1.06
PTCH1-221ENST00000550914 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.45□□□□□ -1.06
PTCH1-221ENST00000550914 RNF222A6NCQ9 220 aa8.45□□□□□ -1.06
PTCH1-221ENST00000550914 ATP6V0CP27449 155 aa8.45□□□□□ -1.06
PTCH1-221ENST00000550914 DNLZQ5SXM8 178 aa8.45□□□□□ -1.06
PTCH1-221ENST00000550914 OR2T35Q8NGX2 323 aa8.45□□□□□ -1.06
PTCH1-221ENST00000550914 BAALCQ8WXS3 180 aa8.45□□□□□ -1.06
PTCH1-221ENST00000550914 AQP10Q96PS8 301 aa8.45□□□□□ -1.06
PTCH1-221ENST00000550914 CHCHD7Q9BUK0 85 aa8.45□□□□□ -1.06
PTCH1-221ENST00000550914 ACTR3CQ9C0K3 210 aaPredicted RBP8.45□□□□□ -1.06
PTCH1-221ENST00000550914 URGCP-MRPS24S4R325 110 aa8.45□□□□□ -1.06
PTCH1-221ENST00000550914 LRP1Q07954 4544 aaKnown RBP8.44□□□□□ -1.06
PTCH1-221ENST00000550914 RBFOX3A6NFN3 312 aa8.44□□□□□ -1.06
PTCH1-221ENST00000550914 SCXQ7RTU7 201 aa8.44□□□□□ -1.06
PTCH1-221ENST00000550914 NIT1Q86X76 327 aa8.44□□□□□ -1.06
PTCH1-221ENST00000550914 C14orf178Q8N769 122 aaPredicted RBP8.44□□□□□ -1.06
PTCH1-221ENST00000550914 SYT8Q8NBV8 401 aa8.44□□□□□ -1.06
PTCH1-221ENST00000550914 CHAC1Q9BUX1 264 aa8.44□□□□□ -1.06
PTCH1-221ENST00000550914 NKX6-2Q9C056 277 aaPredicted RBP8.44□□□□□ -1.06
PTCH1-221ENST00000550914 Q9UF83 564 aa8.44□□□□□ -1.06
PTCH1-221ENST00000550914 ARL2-SNX15V9GYD0 113 aa8.44□□□□□ -1.06
PTCH1-221ENST00000550914 B4DEV8 164 aa8.43□□□□□ -1.06
PTCH1-221ENST00000550914 ELOBQ15370 118 aa8.43□□□□□ -1.06
PTCH1-221ENST00000550914 SERTAD4-AS1Q5TG53 156 aa8.43□□□□□ -1.06
PTCH1-221ENST00000550914 ATRAIDQ6UW56 229 aa8.43□□□□□ -1.06
PTCH1-221ENST00000550914 COX8CQ7Z4L0 72 aa8.43□□□□□ -1.06
PTCH1-221ENST00000550914 SAMD10Q9BYL1 202 aa8.43□□□□□ -1.06
PTCH1-221ENST00000550914 JPT2Q9H910 190 aa8.43□□□□□ -1.06
PTCH1-221ENST00000550914 TRAV34A0A0B4J273 112 aa8.42□□□□□ -1.06
PTCH1-221ENST00000550914 H3BVH4 76 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms