RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 TEX49A0A1B0GTD5 131 aa8.6□□□□□ -1.03
CDH3-203ENST00000542274 LY6HO94772 140 aa8.6□□□□□ -1.03
CDH3-203ENST00000542274 HLA-DMBP28068 263 aa8.6□□□□□ -1.03
CDH3-203ENST00000542274 HBBP68871 147 aa8.6□□□□□ -1.03
CDH3-203ENST00000542274 ATP5L2Q7Z4Y8 100 aa8.6□□□□□ -1.03
CDH3-203ENST00000542274 PLXNB1O43157 2135 aa8.59□□□□□ -1.03
CDH3-203ENST00000542274 PIGBOS1A0A0B4J2F0 54 aa8.59□□□□□ -1.03
CDH3-203ENST00000542274 LGALS9O00182 355 aa8.59□□□□□ -1.03
CDH3-203ENST00000542274 NEXN-AS1Q8NBZ9 246 aa8.59□□□□□ -1.03
CDH3-203ENST00000542274 MRPL20Q9BYC9 149 aaKnown RBP8.59□□□□□ -1.03
CDH3-203ENST00000542274 C16orf95Q9H693 158 aa8.59□□□□□ -1.03
CDH3-203ENST00000542274 DKK2Q9UBU2 259 aa8.59□□□□□ -1.03
CDH3-203ENST00000542274 TRBV7-3A0A075B6L6 115 aa8.59□□□□□ -1.03
CDH3-203ENST00000542274 NDUFC2O95298 119 aa8.59□□□□□ -1.03
CDH3-203ENST00000542274 IGLV2-8P01709 118 aa8.59□□□□□ -1.03
CDH3-203ENST00000542274 VMA21Q3ZAQ7 101 aa8.59□□□□□ -1.03
CDH3-203ENST00000542274 Q8N7P7 452 aa8.59□□□□□ -1.03
CDH3-203ENST00000542274 OTORQ9NRC9 128 aa8.59□□□□□ -1.03
CDH3-203ENST00000542274 P01737 135 aa8.58□□□□□ -1.04
CDH3-203ENST00000542274 MRPL53Q96EL3 112 aaKnown RBP8.58□□□□□ -1.04
CDH3-203ENST00000542274 MALRD1Q5VYJ5 2156 aa8.58□□□□□ -1.04
CDH3-203ENST00000542274 ARHGAP32A7KAX9 2087 aa8.58□□□□□ -1.04
CDH3-203ENST00000542274 C19orf84I3L1E1 186 aa8.58□□□□□ -1.04
CDH3-203ENST00000542274 BBC3Q96PG8 261 aaPredicted RBP8.58□□□□□ -1.04
CDH3-203ENST00000542274 AAMDCQ9H7C9 122 aa8.58□□□□□ -1.04
CDH3-203ENST00000542274 MRPS12O15235 138 aaKnown RBP8.57□□□□□ -1.04
CDH3-203ENST00000542274 LEPP41159 167 aa8.57□□□□□ -1.04
CDH3-203ENST00000542274 NSUN5P1Q3KNT7 163 aa8.57□□□□□ -1.04
CDH3-203ENST00000542274 PDPNQ86YL7 162 aa8.57□□□□□ -1.04
CDH3-203ENST00000542274 MYOZ3Q8TDC0 251 aa8.57□□□□□ -1.04
CDH3-203ENST00000542274 ITLN2Q8WWU7 325 aaPredicted RBP8.57□□□□□ -1.04
CDH3-203ENST00000542274 MED13LQ71F56 2210 aa8.57□□□□□ -1.04
CDH3-203ENST00000542274 CELSR1Q9NYQ6 3014 aa8.57□□□□□ -1.04
CDH3-203ENST00000542274 A0A096LNJ9 63 aa8.57□□□□□ -1.04
CDH3-203ENST00000542274 C15orf61A6NNL5 157 aa8.57□□□□□ -1.04
CDH3-203ENST00000542274 LOXP28300 417 aaPredicted RBP8.57□□□□□ -1.04
CDH3-203ENST00000542274 ZNF137PP52743 207 aa8.57□□□□□ -1.04
CDH3-203ENST00000542274 SLC25A48Q6ZT89 311 aaKnown RBP8.57□□□□□ -1.04
CDH3-203ENST00000542274 PGPA6NDG6 321 aa8.56□□□□□ -1.04
CDH3-203ENST00000542274 INS-IGF2F8WCM5 200 aa8.56□□□□□ -1.04
CDH3-203ENST00000542274 PYYP10082 97 aa8.56□□□□□ -1.04
CDH3-203ENST00000542274 RPL13AP40429 203 aaKnown RBP8.56□□□□□ -1.04
CDH3-203ENST00000542274 CRIP2P52943 208 aaPredicted RBP8.56□□□□□ -1.04
CDH3-203ENST00000542274 C1orf159Q96HA4 380 aa8.56□□□□□ -1.04
CDH3-203ENST00000542274 NAV3Q8IVL0 2385 aa8.56□□□□□ -1.04
CDH3-203ENST00000542274 E7EUB6 86 aa8.56□□□□□ -1.04
CDH3-203ENST00000542274 MLANAQ16655 118 aa8.56□□□□□ -1.04
CDH3-203ENST00000542274 MAPKAPK5-AS1Q8N8E1 139 aa8.56□□□□□ -1.04
CDH3-203ENST00000542274 SSMEM1Q8WWF3 244 aa8.56□□□□□ -1.04
CDH3-203ENST00000542274 ZNF714Q96N38 554 aa8.56□□□□□ -1.04
CDH3-203ENST00000542274 IGHV3-72A0A0B4J1Y9 119 aa8.55□□□□□ -1.04
CDH3-203ENST00000542274 A0A1W2PPR1 153 aa8.55□□□□□ -1.04
CDH3-203ENST00000542274 PSMB8P28062 276 aa8.55□□□□□ -1.04
CDH3-203ENST00000542274 OXLD1Q5BKU9 147 aa8.55□□□□□ -1.04
CDH3-203ENST00000542274 MIC13Q5XKP0 118 aa8.55□□□□□ -1.04
CDH3-203ENST00000542274 PRSS46E5RG02 174 aa8.55□□□□□ -1.04
CDH3-203ENST00000542274 TCRAP04437 139 aa8.55□□□□□ -1.04
CDH3-203ENST00000542274 PSMG4Q5JS54 123 aa8.55□□□□□ -1.04
CDH3-203ENST00000542274 PRSS3P2Q8NHM4 247 aa8.55□□□□□ -1.04
CDH3-203ENST00000542274 C11orf45Q8TAV5 145 aa8.55□□□□□ -1.04
CDH3-203ENST00000542274 RITA1Q96K30 269 aa8.55□□□□□ -1.04
CDH3-203ENST00000542274 MGST2Q99735 147 aa8.55□□□□□ -1.04
CDH3-203ENST00000542274 CSMD2Q7Z408 3487 aa8.55□□□□□ -1.04
CDH3-203ENST00000542274 FAM208BQ5VWN6 2430 aa8.54□□□□□ -1.04
CDH3-203ENST00000542274 SAA1P0DJI8 122 aaPredicted RBP8.54□□□□□ -1.04
CDH3-203ENST00000542274 C10orf55Q5SWW7 151 aa8.54□□□□□ -1.04
CDH3-203ENST00000542274 HIST2H2BCQ6DN03 193 aa8.54□□□□□ -1.04
CDH3-203ENST00000542274 HIST2H2BDQ6DRA6 164 aa8.54□□□□□ -1.04
CDH3-203ENST00000542274 DOPEY1Q5JWR5 2465 aa8.54□□□□□ -1.04
CDH3-203ENST00000542274 H3BMM0 161 aa8.54□□□□□ -1.04
CDH3-203ENST00000542274 NDUFB3O43676 98 aa8.54□□□□□ -1.04
CDH3-203ENST00000542274 LOXL1Q08397 574 aaPredicted RBP8.54□□□□□ -1.04
CDH3-203ENST00000542274 UBE2WQ96B02 151 aa8.54□□□□□ -1.04
CDH3-203ENST00000542274 LINC00574Q9H8X3 128 aa8.54□□□□□ -1.04
CDH3-203ENST00000542274 TMEM14BQ9NUH8 114 aa8.54□□□□□ -1.04
CDH3-203ENST00000542274 WDR83OSQ9Y284 106 aa8.54□□□□□ -1.04
CDH3-203ENST00000542274 CRYBG3Q68DQ2 2970 aa8.54□□□□□ -1.04
CDH3-203ENST00000542274 MAP1AP78559 2803 aaPredicted RBP8.54□□□□□ -1.04
CDH3-203ENST00000542274 PEX7O00628 323 aa8.53□□□□□ -1.04
CDH3-203ENST00000542274 IGHV3-48P01763 117 aa8.53□□□□□ -1.04
CDH3-203ENST00000542274 IFI27L1Q96BM0 104 aa8.53□□□□□ -1.04
CDH3-203ENST00000542274 LRRK2Q5S007 2527 aa8.53□□□□□ -1.04
CDH3-203ENST00000542274 FAM240AA0A1B0GVK7 77 aa8.53□□□□□ -1.04
CDH3-203ENST00000542274 IGF2BP2-AS1Q96M15 143 aa8.53□□□□□ -1.04
CDH3-203ENST00000542274 SPG11Q96JI7 2443 aa8.53□□□□□ -1.04
CDH3-203ENST00000542274 H3BTX0 84 aa8.52□□□□□ -1.04
CDH3-203ENST00000542274 ATOX1O00244 68 aa8.52□□□□□ -1.04
CDH3-203ENST00000542274 APELAP0DMC3 54 aa8.52□□□□□ -1.04
CDH3-203ENST00000542274 NPC2P61916 151 aa8.52□□□□□ -1.04
CDH3-203ENST00000542274 WFDC3Q8IUB2 231 aa8.52□□□□□ -1.04
CDH3-203ENST00000542274 ABCA1O95477 2261 aa8.52□□□□□ -1.05
CDH3-203ENST00000542274 TRAV12-2A0A075B6T6 113 aa8.52□□□□□ -1.05
CDH3-203ENST00000542274 ZNF22P17026 224 aaPredicted RBP8.52□□□□□ -1.05
CDH3-203ENST00000542274 FXYD7P58549 80 aa8.52□□□□□ -1.05
CDH3-203ENST00000542274 ZNF833PQ6ZTB9 187 aa8.52□□□□□ -1.05
CDH3-203ENST00000542274 UPK3BQ9BT76 320 aa8.52□□□□□ -1.05
CDH3-203ENST00000542274 CD69Q07108 199 aa8.52□□□□□ -1.05
CDH3-203ENST00000542274 DGAT2L7PQ6IED9 249 aa8.52□□□□□ -1.05
CDH3-203ENST00000542274 PEMTQ9UBM1 199 aa8.52□□□□□ -1.05
CDH3-203ENST00000542274 CENPEQ02224 2701 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms