RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 SRSF3P84103 164 aaKnown RBP12.46□□□□□ -0.41
CLSTN3-210ENST00000540931 CEMP1Q6PRD7 247 aaPredicted RBP12.46□□□□□ -0.41
CLSTN3-210ENST00000540931 NUDT10Q8NFP7 164 aa12.46□□□□□ -0.41
CLSTN3-210ENST00000540931 NUDT11Q96G61 164 aa12.46□□□□□ -0.41
CLSTN3-210ENST00000540931 RPP21Q9H633 154 aaKnown RBP12.46□□□□□ -0.41
CLSTN3-210ENST00000540931 OSTCQ9NRP0 149 aa12.46□□□□□ -0.41
CLSTN3-210ENST00000540931 BIRC6Q9NR09 4857 aa12.46□□□□□ -0.42
CLSTN3-210ENST00000540931 DEFB131BA0A096LNP1 70 aa12.45□□□□□ -0.42
CLSTN3-210ENST00000540931 GAGE12BA1L429 117 aa12.45□□□□□ -0.42
CLSTN3-210ENST00000540931 FAM231BA6NCW3 169 aa12.45□□□□□ -0.42
CLSTN3-210ENST00000540931 PGPEP1LA6NFU8 196 aa12.45□□□□□ -0.42
CLSTN3-210ENST00000540931 GATCO43716 136 aaKnown RBP12.45□□□□□ -0.42
CLSTN3-210ENST00000540931 GAGE7O76087 117 aa12.45□□□□□ -0.42
CLSTN3-210ENST00000540931 ARMS2P0C7Q2 107 aa12.45□□□□□ -0.42
CLSTN3-210ENST00000540931 GAGE12FP0CL80 117 aa12.45□□□□□ -0.42
CLSTN3-210ENST00000540931 GAGE12GP0CL81 117 aa12.45□□□□□ -0.42
CLSTN3-210ENST00000540931 GAGE12IP0CL82 117 aa12.45□□□□□ -0.42
CLSTN3-210ENST00000540931 RNASE3P12724 160 aaKnown RBP12.45□□□□□ -0.42
CLSTN3-210ENST00000540931 ZNF876PQ49A33 203 aa12.45□□□□□ -0.42
CLSTN3-210ENST00000540931 Q6ZTC4 211 aa12.45□□□□□ -0.42
CLSTN3-210ENST00000540931 ZFP82Q8N141 532 aa12.45□□□□□ -0.42
CLSTN3-210ENST00000540931 SACSQ9NZJ4 4579 aa12.44□□□□□ -0.42
CLSTN3-210ENST00000540931 A8MWV9 139 aa12.44□□□□□ -0.42
CLSTN3-210ENST00000540931 C9JQL5 133 aa12.44□□□□□ -0.42
CLSTN3-210ENST00000540931 K7EN84 100 aa12.44□□□□□ -0.42
CLSTN3-210ENST00000540931 Q6ZTI0 123 aa12.44□□□□□ -0.42
CLSTN3-210ENST00000540931 COMMD7Q86VX2 200 aa12.44□□□□□ -0.42
CLSTN3-210ENST00000540931 SSBP4Q9BWG4 385 aaPredicted RBP12.44□□□□□ -0.42
CLSTN3-210ENST00000540931 SCRT2Q9NQ03 307 aa12.44□□□□□ -0.42
CLSTN3-210ENST00000540931 TRAV4A0A0B4J268 109 aa12.43□□□□□ -0.42
CLSTN3-210ENST00000540931 SNAI2O43623 268 aa12.43□□□□□ -0.42
CLSTN3-210ENST00000540931 CACNG7P62955 275 aa12.43□□□□□ -0.42
CLSTN3-210ENST00000540931 CASC10Q5T4H9 136 aa12.43□□□□□ -0.42
CLSTN3-210ENST00000540931 WDR73Q6P4I2 378 aa12.43□□□□□ -0.42
CLSTN3-210ENST00000540931 GFRA4Q9GZZ7 299 aa12.43□□□□□ -0.42
CLSTN3-210ENST00000540931 TMSB15BA0A087X1C1 80 aa12.42□□□□□ -0.42
CLSTN3-210ENST00000540931 GRIFINA4D1Z8 144 aa12.42□□□□□ -0.42
CLSTN3-210ENST00000540931 H3BVH4 76 aa12.42□□□□□ -0.42
CLSTN3-210ENST00000540931 PPP1R2P9O14990 202 aa12.42□□□□□ -0.42
CLSTN3-210ENST00000540931 RPL23P62829 140 aaKnown RBP12.42□□□□□ -0.42
CLSTN3-210ENST00000540931 ADIRFQ15847 76 aa12.42□□□□□ -0.42
CLSTN3-210ENST00000540931 FER1L6-AS1Q8NA97 138 aa12.42□□□□□ -0.42
CLSTN3-210ENST00000540931 OR4C5Q8NGB2 326 aa12.42□□□□□ -0.42
CLSTN3-210ENST00000540931 ISOC2Q96AB3 205 aa12.42□□□□□ -0.42
CLSTN3-210ENST00000540931 SFRP2Q96HF1 295 aa12.42□□□□□ -0.42
CLSTN3-210ENST00000540931 MRPL16Q9NX20 251 aaKnown RBP12.42□□□□□ -0.42
CLSTN3-210ENST00000540931 TMEM218A2RU14 115 aa12.41□□□□□ -0.42
CLSTN3-210ENST00000540931 H3BNG1 76 aa12.41□□□□□ -0.42
CLSTN3-210ENST00000540931 RHODO00212 210 aa12.41□□□□□ -0.42
CLSTN3-210ENST00000540931 SPANXN1Q5VSR9 72 aa12.41□□□□□ -0.42
CLSTN3-210ENST00000540931 ZFP2Q6ZN57 461 aa12.41□□□□□ -0.42
CLSTN3-210ENST00000540931 C15orf53Q8NAA6 179 aa12.41□□□□□ -0.42
CLSTN3-210ENST00000540931 SEC11CQ9BY50 192 aa12.41□□□□□ -0.42
CLSTN3-210ENST00000540931 RNASE7Q9H1E1 156 aaKnown RBP12.41□□□□□ -0.42
CLSTN3-210ENST00000540931 OR10G8Q8NGN5 311 aa12.4□□□□□ -0.42
CLSTN3-210ENST00000540931 BORCS7Q96B45 105 aa12.4□□□□□ -0.42
CLSTN3-210ENST00000540931 F5H768 121 aa12.39□□□□□ -0.43
CLSTN3-210ENST00000540931 F8W036 122 aa12.39□□□□□ -0.43
CLSTN3-210ENST00000540931 IGLC6P0CF74 106 aa12.39□□□□□ -0.43
CLSTN3-210ENST00000540931 FOXA3P55318 350 aaPredicted RBP12.39□□□□□ -0.43
CLSTN3-210ENST00000540931 RPL19P84098 196 aaKnown RBP12.39□□□□□ -0.43
CLSTN3-210ENST00000540931 TSKUQ8WUA8 353 aa12.39□□□□□ -0.43
CLSTN3-210ENST00000540931 TRGV4A0A0C4DH28 118 aa12.38□□□□□ -0.43
CLSTN3-210ENST00000540931 NXPH4O95158 308 aa12.38□□□□□ -0.43
CLSTN3-210ENST00000540931 MT-ND4LP03901 98 aa12.38□□□□□ -0.43
CLSTN3-210ENST00000540931 HTN3P15516 51 aa12.38□□□□□ -0.43
CLSTN3-210ENST00000540931 NDUFA5Q16718 116 aa12.38□□□□□ -0.43
CLSTN3-210ENST00000540931 ANAPC16Q96DE5 110 aa12.38□□□□□ -0.43
CLSTN3-210ENST00000540931 PRO0255Q9UI72 69 aa12.38□□□□□ -0.43
CLSTN3-210ENST00000540931 DNAH7Q8WXX0 4024 aa12.37□□□□□ -0.43
CLSTN3-210ENST00000540931 IGHV4-4A0A075B6R2 117 aa12.37□□□□□ -0.43
CLSTN3-210ENST00000540931 RS1O15537 224 aa12.37□□□□□ -0.43
CLSTN3-210ENST00000540931 TRGC1P0CF51 173 aa12.37□□□□□ -0.43
CLSTN3-210ENST00000540931 DNAH1Q9P2D7 4330 aa12.36□□□□□ -0.43
CLSTN3-210ENST00000540931 M0R381 172 aa12.36□□□□□ -0.43
CLSTN3-210ENST00000540931 SMIM17P0DL12 118 aa12.36□□□□□ -0.43
CLSTN3-210ENST00000540931 CTRLP40313 264 aa12.36□□□□□ -0.43
CLSTN3-210ENST00000540931 CFAP126Q5VTH2 177 aa12.36□□□□□ -0.43
CLSTN3-210ENST00000540931 ZFAND6Q6FIF0 208 aa12.36□□□□□ -0.43
CLSTN3-210ENST00000540931 SMIM15Q7Z3B0 74 aa12.36□□□□□ -0.43
CLSTN3-210ENST00000540931 ZNF575Q86XF7 245 aa12.36□□□□□ -0.43
CLSTN3-210ENST00000540931 AP1S3Q96PC3 154 aa12.36□□□□□ -0.43
CLSTN3-210ENST00000540931 CNFNQ9BYD5 112 aa12.36□□□□□ -0.43
CLSTN3-210ENST00000540931 LCE6AA0A183 80 aa12.35□□□□□ -0.43
CLSTN3-210ENST00000540931 IGLL5B9A064 214 aa12.35□□□□□ -0.43
CLSTN3-210ENST00000540931 DMRTA1Q5VZB9 504 aa12.35□□□□□ -0.43
CLSTN3-210ENST00000540931 SH2D6Q7Z4S9 175 aa12.35□□□□□ -0.43
CLSTN3-210ENST00000540931 TPPP3Q9BW30 176 aa12.35□□□□□ -0.43
CLSTN3-210ENST00000540931 HHLA3Q9XRX5 114 aa12.35□□□□□ -0.43
CLSTN3-210ENST00000540931 LYZL1Q6UWQ5 148 aa12.34□□□□□ -0.43
CLSTN3-210ENST00000540931 NAT8BQ9UHF3 227 aa12.34□□□□□ -0.43
CLSTN3-210ENST00000540931 V9GYV3 84 aa12.34□□□□□ -0.43
CLSTN3-210ENST00000540931 TRBV6-4A0A1B0GX49 114 aa12.33□□□□□ -0.44
CLSTN3-210ENST00000540931 OR10AG1Q8NH19 301 aa12.33□□□□□ -0.44
CLSTN3-210ENST00000540931 PRADC1Q9BSG0 188 aa12.33□□□□□ -0.44
CLSTN3-210ENST00000540931 A0A1B0GW15 77 aa12.32□□□□□ -0.44
CLSTN3-210ENST00000540931 PAX4O43316 350 aa12.32□□□□□ -0.44
CLSTN3-210ENST00000540931 GZMBP10144 247 aa12.32□□□□□ -0.44
CLSTN3-210ENST00000540931 FHL2Q14192 279 aa12.32□□□□□ -0.44
CLSTN3-210ENST00000540931 ZNF479Q96JC4 524 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms