RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 IGHV3-33P01772 117 aa9.45□□□□□ -0.9
SNHG1-213ENST00000540725 IGHV3-30-3P0DP02 117 aa9.45□□□□□ -0.9
SNHG1-213ENST00000540725 IGHV3-30-5P0DP03 117 aa9.45□□□□□ -0.9
SNHG1-213ENST00000540725 GCHFRP30047 84 aa9.45□□□□□ -0.9
SNHG1-213ENST00000540725 ZNF506Q5JVG8 444 aa9.45□□□□□ -0.9
SNHG1-213ENST00000540725 LELP1Q5T871 98 aa9.45□□□□□ -0.9
SNHG1-213ENST00000540725 TMEM75Q8N9X5 138 aa9.45□□□□□ -0.9
SNHG1-213ENST00000540725 SUN5Q8TC36 379 aa9.45□□□□□ -0.9
SNHG1-213ENST00000540725 RAB24Q969Q5 203 aa9.45□□□□□ -0.9
SNHG1-213ENST00000540725 TMEM70Q9BUB7 260 aa9.45□□□□□ -0.9
SNHG1-213ENST00000540725 PGPEP1LA6NFU8 196 aa9.44□□□□□ -0.9
SNHG1-213ENST00000540725 IGLV2-11P01706 119 aa9.44□□□□□ -0.9
SNHG1-213ENST00000540725 C1QBP02746 253 aa9.44□□□□□ -0.9
SNHG1-213ENST00000540725 FLI1Q01543 452 aaPredicted RBP9.44□□□□□ -0.9
SNHG1-213ENST00000540725 SMUG1Q53HV7 270 aa9.44□□□□□ -0.9
SNHG1-213ENST00000540725 Q8N814 137 aa9.44□□□□□ -0.9
SNHG1-213ENST00000540725 PTH2Q96A98 100 aa9.44□□□□□ -0.9
SNHG1-213ENST00000540725 PSMG3Q9BT73 122 aaPredicted RBP9.44□□□□□ -0.9
SNHG1-213ENST00000540725 GGTLC3B5MD39 225 aa9.43□□□□□ -0.9
SNHG1-213ENST00000540725 FAM229AH3BQW9 127 aa9.43□□□□□ -0.9
SNHG1-213ENST00000540725 MGST1P10620 155 aaKnown RBP9.43□□□□□ -0.9
SNHG1-213ENST00000540725 RNASE3P12724 160 aaKnown RBP9.43□□□□□ -0.9
SNHG1-213ENST00000540725 ATP6V0CP27449 155 aa9.43□□□□□ -0.9
SNHG1-213ENST00000540725 SUMO1P63165 101 aaKnown RBP9.43□□□□□ -0.9
SNHG1-213ENST00000540725 IFITM2Q01629 132 aa9.43□□□□□ -0.9
SNHG1-213ENST00000540725 PRNTQ86SH4 94 aa9.43□□□□□ -0.9
SNHG1-213ENST00000540725 CYB561D1Q8N8Q1 229 aa9.43□□□□□ -0.9
SNHG1-213ENST00000540725 ATP6V0E2Q8NHE4 81 aa9.43□□□□□ -0.9
SNHG1-213ENST00000540725 GTSF1LQ9H1H1 148 aa9.43□□□□□ -0.9
SNHG1-213ENST00000540725 EPDR1Q9UM22 224 aa9.43□□□□□ -0.9
SNHG1-213ENST00000540725 MBP02144 154 aa9.42□□□□□ -0.9
SNHG1-213ENST00000540725 LAGE3Q14657 143 aa9.42□□□□□ -0.9
SNHG1-213ENST00000540725 TMEM167BQ9NRX6 74 aa9.42□□□□□ -0.9
SNHG1-213ENST00000540725 CXorf1O96002 111 aa9.41□□□□□ -0.9
SNHG1-213ENST00000540725 SERF2P84101 59 aa9.41□□□□□ -0.9
SNHG1-213ENST00000540725 AQP10Q96PS8 301 aa9.41□□□□□ -0.9
SNHG1-213ENST00000540725 SAPCD1Q5SSQ6 148 aa9.4□□□□□ -0.9
SNHG1-213ENST00000540725 Q6ZSN1 163 aa9.4□□□□□ -0.9
SNHG1-213ENST00000540725 TM2D2Q9BX73 214 aa9.4□□□□□ -0.9
SNHG1-213ENST00000540725 ACTR3CQ9C0K3 210 aaPredicted RBP9.4□□□□□ -0.9
SNHG1-213ENST00000540725 MED28Q9H204 178 aa9.4□□□□□ -0.9
SNHG1-213ENST00000540725 SH3BGRL3Q9H299 93 aa9.4□□□□□ -0.9
SNHG1-213ENST00000540725 PARLQ9H300 379 aa9.4□□□□□ -0.9
SNHG1-213ENST00000540725 S100A4P26447 101 aaKnown RBP9.39□□□□□ -0.91
SNHG1-213ENST00000540725 NKX2-5P52952 324 aaPredicted RBP9.39□□□□□ -0.91
SNHG1-213ENST00000540725 ZFP2Q6ZN57 461 aa9.39□□□□□ -0.91
SNHG1-213ENST00000540725 Q8N3U1 123 aa9.39□□□□□ -0.91
SNHG1-213ENST00000540725 FAM30AQ9NZY2 134 aa9.39□□□□□ -0.91
SNHG1-213ENST00000540725 TNFSF18Q9UNG2 199 aa9.39□□□□□ -0.91
SNHG1-213ENST00000540725 TRAV34A0A0B4J273 112 aa9.38□□□□□ -0.91
SNHG1-213ENST00000540725 IGKV3D-20A0A0C4DH25 116 aa9.38□□□□□ -0.91
SNHG1-213ENST00000540725 A0A1W2PRE2 83 aa9.38□□□□□ -0.91
SNHG1-213ENST00000540725 GAGE12JA6NER3 117 aa9.38□□□□□ -0.91
SNHG1-213ENST00000540725 A8MWV9 139 aa9.38□□□□□ -0.91
SNHG1-213ENST00000540725 LINC00694P0DN24 101 aa9.38□□□□□ -0.91
SNHG1-213ENST00000540725 S100A1P23297 94 aa9.38□□□□□ -0.91
SNHG1-213ENST00000540725 GAGE1Q13065 139 aa9.38□□□□□ -0.91
SNHG1-213ENST00000540725 GAGE4Q13068 117 aa9.38□□□□□ -0.91
SNHG1-213ENST00000540725 GAGE5Q13069 117 aa9.38□□□□□ -0.91
SNHG1-213ENST00000540725 WFDC2Q14508 124 aa9.38□□□□□ -0.91
SNHG1-213ENST00000540725 LGALSLQ3ZCW2 172 aaPredicted RBP9.38□□□□□ -0.91
SNHG1-213ENST00000540725 GAGE13Q4V321 117 aa9.38□□□□□ -0.91
SNHG1-213ENST00000540725 LINC00479Q96M42 142 aa9.38□□□□□ -0.91
SNHG1-213ENST00000540725 ARL2-SNX15V9GYD0 113 aa9.38□□□□□ -0.91
SNHG1-213ENST00000540725 ASIPP42127 132 aa9.37□□□□□ -0.91
SNHG1-213ENST00000540725 PIK3CD-AS1Q5SR53 167 aa9.37□□□□□ -0.91
SNHG1-213ENST00000540725 TRAV8-3A0A0A6YYJ7 113 aa9.37□□□□□ -0.91
SNHG1-213ENST00000540725 FABP5P3A8MUU1 101 aa9.37□□□□□ -0.91
SNHG1-213ENST00000540725 IFNA7P01567 189 aa9.37□□□□□ -0.91
SNHG1-213ENST00000540725 Q5BKY6 102 aa9.37□□□□□ -0.91
SNHG1-213ENST00000540725 DAZ4Q86SG3 579 aaKnown RBP9.37□□□□□ -0.91
SNHG1-213ENST00000540725 OR2T35Q8NGX2 323 aa9.37□□□□□ -0.91
SNHG1-213ENST00000540725 JPT2Q9H910 190 aa9.37□□□□□ -0.91
SNHG1-213ENST00000540725 DAZ3Q9NR90 486 aaKnown RBP9.37□□□□□ -0.91
SNHG1-213ENST00000540725 Q9UF83 564 aa9.37□□□□□ -0.91
SNHG1-213ENST00000540725 PEX7O00628 323 aa9.36□□□□□ -0.91
SNHG1-213ENST00000540725 UBE2G2P60604 165 aa9.36□□□□□ -0.91
SNHG1-213ENST00000540725 ZNF726P1Q15940 193 aa9.36□□□□□ -0.91
SNHG1-213ENST00000540725 RPL7L1Q6DKI1 246 aaKnown RBP9.36□□□□□ -0.91
SNHG1-213ENST00000540725 UFSP1Q6NVU6 142 aa9.36□□□□□ -0.91
SNHG1-213ENST00000540725 Q86TA4 180 aa9.36□□□□□ -0.91
SNHG1-213ENST00000540725 C14orf178Q8N769 122 aaPredicted RBP9.36□□□□□ -0.91
SNHG1-213ENST00000540725 SAMD10Q9BYL1 202 aa9.36□□□□□ -0.91
SNHG1-213ENST00000540725 IL36BQ9NZH7 164 aa9.36□□□□□ -0.91
SNHG1-213ENST00000540725 A0A087WWC5 75 aa9.35□□□□□ -0.91
SNHG1-213ENST00000540725 CTXND1A0A1B0GTU2 59 aa9.35□□□□□ -0.91
SNHG1-213ENST00000540725 B4DEV8 164 aa9.35□□□□□ -0.91
SNHG1-213ENST00000540725 H3BVH4 76 aa9.35□□□□□ -0.91
SNHG1-213ENST00000540725 LECT2O14960 151 aa9.35□□□□□ -0.91
SNHG1-213ENST00000540725 TOR2AQ5JU69 321 aa9.35□□□□□ -0.91
SNHG1-213ENST00000540725 INO80EQ8NBZ0 244 aaPredicted RBP9.35□□□□□ -0.91
SNHG1-213ENST00000540725 BORCS7-ASMTA0A0B4J1R7 106 aa9.34□□□□□ -0.91
SNHG1-213ENST00000540725 RNF222A6NCQ9 220 aa9.34□□□□□ -0.91
SNHG1-213ENST00000540725 RHODO00212 210 aa9.34□□□□□ -0.91
SNHG1-213ENST00000540725 FGF8P55075 233 aaPredicted RBP9.34□□□□□ -0.91
SNHG1-213ENST00000540725 DMRTA1Q5VZB9 504 aa9.34□□□□□ -0.91
SNHG1-213ENST00000540725 Q6ZSA8 131 aa9.34□□□□□ -0.91
SNHG1-213ENST00000540725 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.33□□□□□ -0.92
SNHG1-213ENST00000540725 FAM74A7A6NL05 159 aa9.33□□□□□ -0.92
SNHG1-213ENST00000540725 KRBOX1C9JBD0 128 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 127.7 ms