RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 PSMB8P28062 276 aa9.43□□□□□ -0.9
USP3-203ENST00000538686 ZNF415Q09FC8 603 aa9.43□□□□□ -0.9
USP3-203ENST00000538686 RNF7Q9UBF6 113 aa9.43□□□□□ -0.9
USP3-203ENST00000538686 TRAV8-3A0A0A6YYJ7 113 aa9.42□□□□□ -0.9
USP3-203ENST00000538686 NTN3O00634 580 aaPredicted RBP9.42□□□□□ -0.9
USP3-203ENST00000538686 PI4KAP42356 2102 aa9.42□□□□□ -0.9
USP3-203ENST00000538686 DKK4Q9UBT3 224 aa9.42□□□□□ -0.9
USP3-203ENST00000538686 TSHBP01222 138 aa9.41□□□□□ -0.9
USP3-203ENST00000538686 PRB4P10163 310 aaPredicted RBP9.41□□□□□ -0.9
USP3-203ENST00000538686 MNX1P50219 401 aaPredicted RBP9.41□□□□□ -0.9
USP3-203ENST00000538686 NPC2P61916 151 aa9.41□□□□□ -0.9
USP3-203ENST00000538686 TMEM200BQ69YZ2 307 aa9.41□□□□□ -0.9
USP3-203ENST00000538686 CLEC2BQ92478 149 aa9.41□□□□□ -0.9
USP3-203ENST00000538686 EEF1AKMT3Q96AZ1 226 aa9.41□□□□□ -0.9
USP3-203ENST00000538686 C9orf85Q96MD7 179 aa9.41□□□□□ -0.9
USP3-203ENST00000538686 TTTY12Q9BZ98 90 aa9.41□□□□□ -0.9
USP3-203ENST00000538686 V9GYY9 64 aa9.41□□□□□ -0.9
USP3-203ENST00000538686 DOCK10Q96BY6 2186 aa9.41□□□□□ -0.9
USP3-203ENST00000538686 LY6LH3BQJ8 138 aa9.41□□□□□ -0.9
USP3-203ENST00000538686 K7EIM0 57 aa9.41□□□□□ -0.9
USP3-203ENST00000538686 LYZL6O75951 148 aa9.41□□□□□ -0.9
USP3-203ENST00000538686 RNF152Q8N8N0 203 aa9.41□□□□□ -0.9
USP3-203ENST00000538686 TP53TG1Q9Y2A0 90 aa9.41□□□□□ -0.9
USP3-203ENST00000538686 I3L3M4 83 aa9.4□□□□□ -0.9
USP3-203ENST00000538686 RHOHQ15669 191 aa9.4□□□□□ -0.9
USP3-203ENST00000538686 Q6ZT83 130 aa9.4□□□□□ -0.9
USP3-203ENST00000538686 PRIMA1Q86XR5 153 aa9.4□□□□□ -0.9
USP3-203ENST00000538686 CYSTM1Q9H1C7 97 aa9.4□□□□□ -0.9
USP3-203ENST00000538686 LAMA3Q16787 3333 aa9.4□□□□□ -0.91
USP3-203ENST00000538686 A0A0J9YXY3 114 aa9.4□□□□□ -0.91
USP3-203ENST00000538686 ENSAO43768 121 aaKnown RBP9.4□□□□□ -0.91
USP3-203ENST00000538686 SYNJ2BPP57105 145 aa9.4□□□□□ -0.91
USP3-203ENST00000538686 Q0VFX4 171 aa9.4□□□□□ -0.91
USP3-203ENST00000538686 SPINK14Q6IE38 97 aa9.4□□□□□ -0.91
USP3-203ENST00000538686 RNF223E7ERA6 249 aa9.39□□□□□ -0.91
USP3-203ENST00000538686 IGLV1-44P01699 117 aa9.39□□□□□ -0.91
USP3-203ENST00000538686 IGHV1-69P01742 117 aa9.39□□□□□ -0.91
USP3-203ENST00000538686 FAM222AQ5U5X8 452 aa9.39□□□□□ -0.91
USP3-203ENST00000538686 DYNAPQ8N1N2 210 aa9.39□□□□□ -0.91
USP3-203ENST00000538686 CCL13Q99616 98 aa9.39□□□□□ -0.91
USP3-203ENST00000538686 APELAP0DMC3 54 aa9.38□□□□□ -0.91
USP3-203ENST00000538686 TMEM86BQ8N661 226 aa9.38□□□□□ -0.91
USP3-203ENST00000538686 TRAV12-2A0A075B6T6 113 aa9.38□□□□□ -0.91
USP3-203ENST00000538686 EPM2AB3EWF7 344 aa9.38□□□□□ -0.91
USP3-203ENST00000538686 Q6JHZ5 121 aa9.38□□□□□ -0.91
USP3-203ENST00000538686 LINC00336Q6ZUF6 198 aa9.38□□□□□ -0.91
USP3-203ENST00000538686 RPL39LQ96EH5 51 aaKnown RBP9.38□□□□□ -0.91
USP3-203ENST00000538686 C11orf21Q9P2W6 132 aa9.38□□□□□ -0.91
USP3-203ENST00000538686 SERP1Q9Y6X1 66 aa9.38□□□□□ -0.91
USP3-203ENST00000538686 SVILO95425 2214 aa9.38□□□□□ -0.91
USP3-203ENST00000538686 PRR14LQ5THK1 2151 aa9.37□□□□□ -0.91
USP3-203ENST00000538686 SPRY2O43597 315 aa9.37□□□□□ -0.91
USP3-203ENST00000538686 MED14OSP0DP75 135 aa9.37□□□□□ -0.91
USP3-203ENST00000538686 RPL35AP18077 110 aaKnown RBP9.37□□□□□ -0.91
USP3-203ENST00000538686 PMS2CLQ68D20 193 aa9.37□□□□□ -0.91
USP3-203ENST00000538686 TMEM61Q8N0U2 210 aa9.37□□□□□ -0.91
USP3-203ENST00000538686 DSCAMO60469 2012 aa9.37□□□□□ -0.91
USP3-203ENST00000538686 RAI1Q7Z5J4 1906 aaPredicted RBP9.37□□□□□ -0.91
USP3-203ENST00000538686 RANBP2P49792 3224 aaKnown RBP9.36□□□□□ -0.91
USP3-203ENST00000538686 KLRB1Q12918 225 aa9.36□□□□□ -0.91
USP3-203ENST00000538686 MIAQ16674 131 aa9.36□□□□□ -0.91
USP3-203ENST00000538686 BUB3O43684 328 aa9.36□□□□□ -0.91
USP3-203ENST00000538686 CCL5P13501 91 aa9.36□□□□□ -0.91
USP3-203ENST00000538686 Q6ZS52 159 aa9.36□□□□□ -0.91
USP3-203ENST00000538686 MAFAQ8NHW3 353 aaPredicted RBP9.36□□□□□ -0.91
USP3-203ENST00000538686 MRPL53Q96EL3 112 aaKnown RBP9.36□□□□□ -0.91
USP3-203ENST00000538686 LITAFQ99732 161 aa9.36□□□□□ -0.91
USP3-203ENST00000538686 VCYO14598 125 aa9.35□□□□□ -0.91
USP3-203ENST00000538686 PRSS2P07478 247 aa9.35□□□□□ -0.91
USP3-203ENST00000538686 DAZ2Q13117 558 aaKnown RBP9.35□□□□□ -0.91
USP3-203ENST00000538686 DAZ4Q86SG3 579 aaKnown RBP9.35□□□□□ -0.91
USP3-203ENST00000538686 C10orf105Q8TEF2 133 aa9.35□□□□□ -0.91
USP3-203ENST00000538686 RNF5Q99942 180 aa9.35□□□□□ -0.91
USP3-203ENST00000538686 DAZ1Q9NQZ3 744 aaKnown RBP9.35□□□□□ -0.91
USP3-203ENST00000538686 DAZ3Q9NR90 486 aaKnown RBP9.35□□□□□ -0.91
USP3-203ENST00000538686 C5orf42Q9H799 3197 aa9.35□□□□□ -0.91
USP3-203ENST00000538686 IGHV4OR15-8A0A075B7B6 117 aa9.35□□□□□ -0.91
USP3-203ENST00000538686 A0A087WW49 117 aa9.35□□□□□ -0.91
USP3-203ENST00000538686 COX7A2LO14548 114 aa9.35□□□□□ -0.91
USP3-203ENST00000538686 COPS9Q8WXC6 57 aa9.35□□□□□ -0.91
USP3-203ENST00000538686 SPRY3O43610 288 aa9.34□□□□□ -0.91
USP3-203ENST00000538686 GFRALQ6UXV0 394 aa9.34□□□□□ -0.91
USP3-203ENST00000538686 GPHB5Q86YW7 130 aa9.34□□□□□ -0.91
USP3-203ENST00000538686 RNF182Q8N6D2 247 aa9.34□□□□□ -0.91
USP3-203ENST00000538686 DEFB108BQ8NET1 73 aa9.34□□□□□ -0.91
USP3-203ENST00000538686 SMAD5-AS1Q9Y6J3 95 aa9.34□□□□□ -0.91
USP3-203ENST00000538686 IGHV1-18A0A0C4DH31 117 aa9.33□□□□□ -0.92
USP3-203ENST00000538686 FAM236DA0A1B0GTK5 79 aa9.33□□□□□ -0.92
USP3-203ENST00000538686 TIMM17BO60830 172 aa9.33□□□□□ -0.92
USP3-203ENST00000538686 MGPP08493 103 aa9.33□□□□□ -0.92
USP3-203ENST00000538686 FAM236CP0DP71 79 aa9.33□□□□□ -0.92
USP3-203ENST00000538686 TIRAPP58753 221 aa9.33□□□□□ -0.92
USP3-203ENST00000538686 MRPS36P82909 103 aaKnown RBP9.33□□□□□ -0.92
USP3-203ENST00000538686 MBD3L2Q8NHZ7 208 aaPredicted RBP9.33□□□□□ -0.92
USP3-203ENST00000538686 ZFAND3Q9H8U3 227 aa9.33□□□□□ -0.92
USP3-203ENST00000538686 LENEPQ9Y5L5 61 aa9.33□□□□□ -0.92
USP3-203ENST00000538686 USP17L23D6RBM5 183 aa9.33□□□□□ -0.92
USP3-203ENST00000538686 CCL3L1P16619 93 aa9.33□□□□□ -0.92
USP3-203ENST00000538686 PKIGQ9Y2B9 76 aa9.32□□□□□ -0.92
USP3-203ENST00000538686 POLR2KP53803 58 aaKnown RBP9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms