RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 IGHV3-21A0A0B4J1V1 117 aa3.1□□□□□ -1.91
CD44-220ENST00000525688 FNDC10F2Z333 226 aa3.1□□□□□ -1.91
CD44-220ENST00000525688 HMGN4O00479 90 aa3.1□□□□□ -1.91
CD44-220ENST00000525688 NDUFB3O43676 98 aa3.1□□□□□ -1.91
CD44-220ENST00000525688 MPC2O95563 127 aa3.1□□□□□ -1.91
CD44-220ENST00000525688 INSP01308 110 aa3.1□□□□□ -1.91
CD44-220ENST00000525688 TLX1NBP0CAT3 122 aa3.1□□□□□ -1.91
CD44-220ENST00000525688 NPPCP23582 126 aa3.1□□□□□ -1.91
CD44-220ENST00000525688 ZNF93P35789 620 aaPredicted RBP3.1□□□□□ -1.91
CD44-220ENST00000525688 AKR1C2P52895 323 aa3.1□□□□□ -1.91
CD44-220ENST00000525688 TPPP2P59282 170 aa3.1□□□□□ -1.91
CD44-220ENST00000525688 MRPL51Q4U2R6 128 aaKnown RBP3.1□□□□□ -1.91
CD44-220ENST00000525688 SPATA12Q7Z6I5 190 aa3.1□□□□□ -1.91
CD44-220ENST00000525688 AMN1Q8IY45 258 aa3.1□□□□□ -1.91
CD44-220ENST00000525688 SAXO1Q8IYX7 474 aa3.1□□□□□ -1.91
CD44-220ENST00000525688 YPEL2Q96QA6 119 aa3.1□□□□□ -1.91
CD44-220ENST00000525688 MIEN1Q9BRT3 115 aa3.1□□□□□ -1.91
CD44-220ENST00000525688 RPRMQ9NS64 109 aa3.1□□□□□ -1.91
CD44-220ENST00000525688 ZNF586Q9NXT0 402 aa3.1□□□□□ -1.91
CD44-220ENST00000525688 CSMD1Q96PZ7 3565 aa3.1□□□□□ -1.91
CD44-220ENST00000525688 AKAP9Q99996 3911 aa3.1□□□□□ -1.91
CD44-220ENST00000525688 ANKHD1Q8IWZ3 2542 aaKnown RBP3.1□□□□□ -1.91
CD44-220ENST00000525688 A0A0G2JND7 137 aa3.09□□□□□ -1.91
CD44-220ENST00000525688 A0A1W2PP18 115 aa3.09□□□□□ -1.91
CD44-220ENST00000525688 K7ERS5 55 aa3.09□□□□□ -1.91
CD44-220ENST00000525688 ZNF861PO60384 105 aa3.09□□□□□ -1.91
CD44-220ENST00000525688 NDUFB2O95178 105 aa3.09□□□□□ -1.91
CD44-220ENST00000525688 HLA-DQA1P01909 254 aa3.09□□□□□ -1.91
CD44-220ENST00000525688 TCRAP04437 139 aa3.09□□□□□ -1.91
CD44-220ENST00000525688 OR5AC1P0C628 307 aa3.09□□□□□ -1.91
CD44-220ENST00000525688 PTHLHP12272 177 aa3.09□□□□□ -1.91
CD44-220ENST00000525688 RNASE4P34096 147 aaKnown RBP3.09□□□□□ -1.91
CD44-220ENST00000525688 TGFBR1P36897 503 aa3.09□□□□□ -1.91
CD44-220ENST00000525688 AQP4P55087 323 aa3.09□□□□□ -1.91
CD44-220ENST00000525688 TSPEAR-AS2P59090 65 aa3.09□□□□□ -1.91
CD44-220ENST00000525688 KRTAP10-5P60370 271 aa3.09□□□□□ -1.91
CD44-220ENST00000525688 S100A10P60903 97 aa3.09□□□□□ -1.91
CD44-220ENST00000525688 TMEM258P61165 79 aa3.09□□□□□ -1.91
CD44-220ENST00000525688 ZNF117Q03924 483 aa3.09□□□□□ -1.91
CD44-220ENST00000525688 RPL18Q07020 188 aaKnown RBP3.09□□□□□ -1.91
CD44-220ENST00000525688 TFF3Q07654 80 aa3.09□□□□□ -1.91
CD44-220ENST00000525688 LCE1EQ5T753 118 aa3.09□□□□□ -1.91
CD44-220ENST00000525688 NTM-AS1Q6ZSK4 140 aa3.09□□□□□ -1.91
CD44-220ENST00000525688 C10orf111Q8N326 155 aa3.09□□□□□ -1.91
CD44-220ENST00000525688 LINC00311Q8N616 119 aa3.09□□□□□ -1.91
CD44-220ENST00000525688 ZFAND2AQ8N6M9 145 aa3.09□□□□□ -1.91
CD44-220ENST00000525688 Q8N976 141 aa3.09□□□□□ -1.91
CD44-220ENST00000525688 DPH3Q96FX2 82 aa3.09□□□□□ -1.91
CD44-220ENST00000525688 CIB3Q96Q77 187 aaPredicted RBP3.09□□□□□ -1.91
CD44-220ENST00000525688 SPANXDQ9BXN6 97 aa3.09□□□□□ -1.91
CD44-220ENST00000525688 DUSP21Q9H596 190 aa3.09□□□□□ -1.91
CD44-220ENST00000525688 BCL2L10Q9HD36 194 aa3.09□□□□□ -1.91
CD44-220ENST00000525688 XAGE1AQ9HD64 81 aa3.09□□□□□ -1.91
CD44-220ENST00000525688 SAR1AQ9NR31 198 aa3.09□□□□□ -1.91
CD44-220ENST00000525688 TAS2R8Q9NYW2 309 aa3.09□□□□□ -1.91
CD44-220ENST00000525688 CACNA1CQ13936 2221 aa3.09□□□□□ -1.91
CD44-220ENST00000525688 PKDREJQ9NTG1 2253 aa3.09□□□□□ -1.92
CD44-220ENST00000525688 POLQO75417 2590 aa3.08□□□□□ -1.92
CD44-220ENST00000525688 PANO1I0J062 215 aa3.08□□□□□ -1.92
CD44-220ENST00000525688 FXYD1O00168 92 aa3.08□□□□□ -1.92
CD44-220ENST00000525688 LEPROTO15243 131 aa3.08□□□□□ -1.92
CD44-220ENST00000525688 HIST1H2BKO60814 126 aa3.08□□□□□ -1.92
CD44-220ENST00000525688 HIST1H2BJP06899 126 aa3.08□□□□□ -1.92
CD44-220ENST00000525688 DNAH10OSP0CZ25 163 aa3.08□□□□□ -1.92
CD44-220ENST00000525688 IGHV3-30-3P0DP02 117 aa3.08□□□□□ -1.92
CD44-220ENST00000525688 HLA-DRB4P13762 266 aa3.08□□□□□ -1.92
CD44-220ENST00000525688 RPL27AP46776 148 aaKnown RBP3.08□□□□□ -1.92
CD44-220ENST00000525688 HIST1H4AP62805 103 aaKnown RBP3.08□□□□□ -1.92
CD44-220ENST00000525688 FOXF1Q12946 379 aa3.08□□□□□ -1.92
CD44-220ENST00000525688 IZUMO2Q6UXV1 221 aa3.08□□□□□ -1.92
CD44-220ENST00000525688 ZNF767PQ75MW2 155 aa3.08□□□□□ -1.92
CD44-220ENST00000525688 HMGN2P46Q86SG4 172 aa3.08□□□□□ -1.92
CD44-220ENST00000525688 PCP2Q8IVA1 136 aa3.08□□□□□ -1.92
CD44-220ENST00000525688 RNF182Q8N6D2 247 aa3.08□□□□□ -1.92
CD44-220ENST00000525688 C5orf17Q8NAS9 161 aa3.08□□□□□ -1.92
CD44-220ENST00000525688 WFDC11Q8NEX6 87 aa3.08□□□□□ -1.92
CD44-220ENST00000525688 C10orf82Q8WW14 230 aa3.08□□□□□ -1.92
CD44-220ENST00000525688 Q9H521 79 aa3.08□□□□□ -1.92
CD44-220ENST00000525688 C11orf1Q9H5F2 150 aa3.08□□□□□ -1.92
CD44-220ENST00000525688 C16orf95Q9H693 158 aa3.08□□□□□ -1.92
CD44-220ENST00000525688 C21orf62Q9NYP8 219 aa3.08□□□□□ -1.92
CD44-220ENST00000525688 LINC00588Q9Y4M8 146 aa3.08□□□□□ -1.92
CD44-220ENST00000525688 HLA-DRB4X5D2U9 266 aa3.08□□□□□ -1.92
CD44-220ENST00000525688 KIAA1549Q9HCM3 1950 aa3.08□□□□□ -1.92
CD44-220ENST00000525688 ARHGAP21Q5T5U3 1957 aa3.07□□□□□ -1.92
CD44-220ENST00000525688 HEATR5AQ86XA9 2040 aa3.07□□□□□ -1.92
CD44-220ENST00000525688 INTS1Q8N201 2190 aaKnown RBP3.07□□□□□ -1.92
CD44-220ENST00000525688 SPG11Q96JI7 2443 aa3.07□□□□□ -1.92
CD44-220ENST00000525688 MYO9AB2RTY4 2548 aa3.07□□□□□ -1.92
CD44-220ENST00000525688 A0A0J9YW62 118 aa3.07□□□□□ -1.92
CD44-220ENST00000525688 K7ERJ3 54 aa3.07□□□□□ -1.92
CD44-220ENST00000525688 UQCRQO14949 82 aa3.07□□□□□ -1.92
CD44-220ENST00000525688 IGKV1-16P04430 117 aa3.07□□□□□ -1.92
CD44-220ENST00000525688 SLC25A5P05141 298 aaKnown RBP3.07□□□□□ -1.92
CD44-220ENST00000525688 CD14P08571 375 aa3.07□□□□□ -1.92
CD44-220ENST00000525688 CD28P10747 220 aa3.07□□□□□ -1.92
CD44-220ENST00000525688 CATR1Q13166 79 aa3.07□□□□□ -1.92
CD44-220ENST00000525688 TMEM155Q4W5P6 130 aa3.07□□□□□ -1.92
CD44-220ENST00000525688 TMEM91Q6ZNR0 172 aa3.07□□□□□ -1.92
CD44-220ENST00000525688 FOXI2Q6ZQN5 318 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms