RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 C10orf99Q6UWK7 81 aa1.66□□□□□ -2.14
NUP54-215ENST00000514313 CPDO75976 1380 aa1.66□□□□□ -2.14
NUP54-215ENST00000514313 ATG2AQ2TAZ0 1938 aa1.66□□□□□ -2.14
NUP54-215ENST00000514313 FCGBPQ9Y6R7 5405 aaPredicted RBP1.65□□□□□ -2.14
NUP54-215ENST00000514313 NCR2O95944 276 aa1.65□□□□□ -2.15
NUP54-215ENST00000514313 SPINK9Q5DT21 86 aa1.65□□□□□ -2.15
NUP54-215ENST00000514313 SAR1AQ9NR31 198 aa1.65□□□□□ -2.15
NUP54-215ENST00000514313 SOGA1O94964 1423 aa1.65□□□□□ -2.15
NUP54-215ENST00000514313 CASZ1Q86V15 1759 aa1.64□□□□□ -2.15
NUP54-215ENST00000514313 NPFFO15130 113 aa1.64□□□□□ -2.15
NUP54-215ENST00000514313 SPINT3P49223 89 aa1.64□□□□□ -2.15
NUP54-215ENST00000514313 PFDN5Q99471 154 aa1.64□□□□□ -2.15
NUP54-215ENST00000514313 FXYD1O00168 92 aa1.63□□□□□ -2.15
NUP54-215ENST00000514313 RPS25P62851 125 aaKnown RBP1.63□□□□□ -2.15
NUP54-215ENST00000514313 MIC13Q5XKP0 118 aa1.63□□□□□ -2.15
NUP54-215ENST00000514313 VPS25Q9BRG1 176 aa1.63□□□□□ -2.15
NUP54-215ENST00000514313 TCEAL4Q96EI5 215 aa1.62□□□□□ -2.15
NUP54-215ENST00000514313 CDK12Q9NYV4 1490 aaPredicted RBP1.62□□□□□ -2.15
NUP54-215ENST00000514313 MYH13Q9UKX3 1938 aa1.6□□□□□ -2.15
NUP54-215ENST00000514313 PITX3O75364 302 aa1.6□□□□□ -2.15
NUP54-215ENST00000514313 LY6G6CO95867 125 aa1.6□□□□□ -2.15
NUP54-215ENST00000514313 TPT1P8Q9HAU6 139 aa1.6□□□□□ -2.15
NUP54-215ENST00000514313 ZNF670-ZNF695F2Z2N8 137 aa1.59□□□□□ -2.15
NUP54-215ENST00000514313 COPZ1P61923 177 aa1.59□□□□□ -2.15
NUP54-215ENST00000514313 CCDC58Q4VC31 144 aa1.59□□□□□ -2.15
NUP54-215ENST00000514313 FAM107BQ9H098 131 aa1.59□□□□□ -2.15
NUP54-215ENST00000514313 A0A0D9SG42 100 aa1.58□□□□□ -2.16
NUP54-215ENST00000514313 APOC1P02654 83 aa1.58□□□□□ -2.16
NUP54-215ENST00000514313 HMGN1P05114 100 aa1.58□□□□□ -2.16
NUP54-215ENST00000514313 LINC01545Q5VT33 79 aa1.58□□□□□ -2.16
NUP54-215ENST00000514313 ERG28Q9UKR5 140 aa1.58□□□□□ -2.16
NUP54-215ENST00000514313 VIRMAQ69YN4 1812 aaKnown RBP1.58□□□□□ -2.16
NUP54-215ENST00000514313 ZNF137PP52743 207 aa1.57□□□□□ -2.16
NUP54-215ENST00000514313 OR2T2Q6IF00 324 aa1.57□□□□□ -2.16
NUP54-215ENST00000514313 VSTM2AQ8TAG5 236 aa1.57□□□□□ -2.16
NUP54-215ENST00000514313 DLEC1Q9Y238 1755 aa1.57□□□□□ -2.16
NUP54-215ENST00000514313 AFDNP55196 1824 aaKnown RBP1.56□□□□□ -2.16
NUP54-215ENST00000514313 TEX49A0A1B0GTD5 131 aa1.56□□□□□ -2.16
NUP54-215ENST00000514313 CCDC179H3BU77 68 aa1.56□□□□□ -2.16
NUP54-215ENST00000514313 NDUFA2O43678 99 aa1.56□□□□□ -2.16
NUP54-215ENST00000514313 KLKP1Q107X0 134 aa1.56□□□□□ -2.16
NUP54-215ENST00000514313 IFI27L1Q96BM0 104 aa1.56□□□□□ -2.16
NUP54-215ENST00000514313 NDUFA12Q9UI09 145 aa1.56□□□□□ -2.16
NUP54-215ENST00000514313 PAIP2BQ9ULR5 123 aaKnown RBP1.56□□□□□ -2.16
NUP54-215ENST00000514313 PLXNA2O75051 1894 aa1.56□□□□□ -2.16
NUP54-215ENST00000514313 RREB1Q92766 1687 aa1.55□□□□□ -2.16
NUP54-215ENST00000514313 SPINK13Q1W4C9 94 aa1.55□□□□□ -2.16
NUP54-215ENST00000514313 C6orf52Q5T4I8 152 aa1.55□□□□□ -2.16
NUP54-215ENST00000514313 Q6ZUT4 128 aa1.55□□□□□ -2.16
NUP54-215ENST00000514313 ZDBF2Q9HCK1 2354 aa1.55□□□□□ -2.16
NUP54-215ENST00000514313 FXYD6P3P58550 94 aa1.54□□□□□ -2.16
NUP54-215ENST00000514313 NDUFA11Q86Y39 141 aa1.54□□□□□ -2.16
NUP54-215ENST00000514313 TSKUQ8WUA8 353 aa1.54□□□□□ -2.16
NUP54-215ENST00000514313 PTPRMP28827 1452 aa1.54□□□□□ -2.16
NUP54-215ENST00000514313 PYYP10082 97 aa1.53□□□□□ -2.16
NUP54-215ENST00000514313 MYH6P13533 1939 aa1.53□□□□□ -2.16
NUP54-215ENST00000514313 BLMP54132 1417 aaPredicted RBP1.53□□□□□ -2.16
NUP54-215ENST00000514313 SDF2Q99470 211 aa1.53□□□□□ -2.16
NUP54-215ENST00000514313 PSMG3Q9BT73 122 aaPredicted RBP1.53□□□□□ -2.16
NUP54-215ENST00000514313 SPCS2Q15005 226 aa1.52□□□□□ -2.17
NUP54-215ENST00000514313 TMEM141Q96I45 108 aa1.52□□□□□ -2.17
NUP54-215ENST00000514313 TMEM14BQ9NUH8 114 aa1.52□□□□□ -2.17
NUP54-215ENST00000514313 SPAG17Q6Q759 2223 aa1.52□□□□□ -2.17
NUP54-215ENST00000514313 PIRTP0C851 137 aa1.51□□□□□ -2.17
NUP54-215ENST00000514313 RRAS2P62070 204 aaPredicted RBP1.51□□□□□ -2.17
NUP54-215ENST00000514313 TCRBV3S1A0A5B6 114 aa1.5□□□□□ -2.17
NUP54-215ENST00000514313 RPL37P61927 97 aaKnown RBP1.5□□□□□ -2.17
NUP54-215ENST00000514313 SCIMPQ6UWF3 145 aa1.5□□□□□ -2.17
NUP54-215ENST00000514313 BICRAQ9NZM4 1560 aa1.5□□□□□ -2.17
NUP54-215ENST00000514313 NPC2P61916 151 aa1.49□□□□□ -2.17
NUP54-215ENST00000514313 ADGRB1O14514 1584 aa1.49□□□□□ -2.17
NUP54-215ENST00000514313 KIF13AQ9H1H9 1805 aa1.49□□□□□ -2.17
NUP54-215ENST00000514313 GUCA1AP43080 201 aaPredicted RBP1.48□□□□□ -2.17
NUP54-215ENST00000514313 ELOF1P60002 83 aaKnown RBP1.48□□□□□ -2.17
NUP54-215ENST00000514313 SPANXN1Q5VSR9 72 aa1.48□□□□□ -2.17
NUP54-215ENST00000514313 C10orf95Q9H7T3 257 aa1.48□□□□□ -2.17
NUP54-215ENST00000514313 COA4Q9NYJ1 87 aa1.48□□□□□ -2.17
NUP54-215ENST00000514313 FBN2P35556 2912 aa1.47□□□□□ -2.17
NUP54-215ENST00000514313 BCORL1Q5H9F3 1711 aa1.47□□□□□ -2.17
NUP54-215ENST00000514313 CYP2G1PQ6ZSU1 146 aa1.47□□□□□ -2.17
NUP54-215ENST00000514313 TMEM191AQ9H0A3 160 aa1.47□□□□□ -2.17
NUP54-215ENST00000514313 BET1LQ9NYM9 111 aa1.47□□□□□ -2.17
NUP54-215ENST00000514313 ABCA4P78363 2273 aa1.47□□□□□ -2.17
NUP54-215ENST00000514313 LOC285556D6RIA3 1793 aa1.47□□□□□ -2.17
NUP54-215ENST00000514313 ESPL1Q14674 2120 aa1.46□□□□□ -2.18
NUP54-215ENST00000514313 KRTAP19-3Q7Z4W3 81 aa1.46□□□□□ -2.18
NUP54-215ENST00000514313 KCNRGQ8N5I3 272 aa1.46□□□□□ -2.18
NUP54-215ENST00000514313 TSC22D3Q99576 134 aa1.46□□□□□ -2.18
NUP54-215ENST00000514313 TMEM242Q9NWH2 141 aa1.46□□□□□ -2.18
NUP54-215ENST00000514313 KNTC1P50748 2209 aa1.46□□□□□ -2.18
NUP54-215ENST00000514313 TRAV12-3A0A0B4J271 114 aa1.45□□□□□ -2.18
NUP54-215ENST00000514313 PPP1R1CQ8WVI7 109 aa1.45□□□□□ -2.18
NUP54-215ENST00000514313 TRAV12-2A0A075B6T6 113 aa1.44□□□□□ -2.18
NUP54-215ENST00000514313 A0A096LNT2 108 aa1.44□□□□□ -2.18
NUP54-215ENST00000514313 SLC48A1Q6P1K1 146 aa1.44□□□□□ -2.18
NUP54-215ENST00000514313 DPH3Q96FX2 82 aa1.44□□□□□ -2.18
NUP54-215ENST00000514313 IL5P05113 134 aa1.43□□□□□ -2.18
NUP54-215ENST00000514313 C9orf116Q5BN46 136 aaPredicted RBP1.43□□□□□ -2.18
NUP54-215ENST00000514313 TMEM2Q9UHN6 1383 aa1.43□□□□□ -2.18
NUP54-215ENST00000514313 UBE2G1P62253 170 aa1.42□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms