RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 C12orf74Q32Q52 190 aa7.14□□□□□ -1.27
NUP54-203ENST00000504173 LINC01551Q86U37 167 aa7.14□□□□□ -1.27
NUP54-203ENST00000504173 SPXQ9BT56 116 aa7.14□□□□□ -1.27
NUP54-203ENST00000504173 NAT8Q9UHE5 227 aa7.14□□□□□ -1.27
NUP54-203ENST00000504173 GAGE12BA1L429 117 aa7.13□□□□□ -1.27
NUP54-203ENST00000504173 H3BVH4 76 aa7.13□□□□□ -1.27
NUP54-203ENST00000504173 SPINK4O60575 86 aa7.13□□□□□ -1.27
NUP54-203ENST00000504173 GAGE7O76087 117 aa7.13□□□□□ -1.27
NUP54-203ENST00000504173 GAGE12FP0CL80 117 aa7.13□□□□□ -1.27
NUP54-203ENST00000504173 GAGE12GP0CL81 117 aa7.13□□□□□ -1.27
NUP54-203ENST00000504173 GAGE12IP0CL82 117 aa7.13□□□□□ -1.27
NUP54-203ENST00000504173 ERVFC1-1P60608 527 aa7.13□□□□□ -1.27
NUP54-203ENST00000504173 ADIRFQ15847 76 aa7.13□□□□□ -1.27
NUP54-203ENST00000504173 Q6ZTC4 211 aa7.13□□□□□ -1.27
NUP54-203ENST00000504173 Q6ZTI0 123 aa7.13□□□□□ -1.27
NUP54-203ENST00000504173 OR2D3Q8NGH3 330 aa7.13□□□□□ -1.27
NUP54-203ENST00000504173 RNASE7Q9H1E1 156 aaKnown RBP7.13□□□□□ -1.27
NUP54-203ENST00000504173 MRPL16Q9NX20 251 aaKnown RBP7.13□□□□□ -1.27
NUP54-203ENST00000504173 XKRY2A2RUG3 117 aa7.12□□□□□ -1.27
NUP54-203ENST00000504173 M0R2P5 195 aa7.12□□□□□ -1.27
NUP54-203ENST00000504173 CXCL1P09341 107 aa7.12□□□□□ -1.27
NUP54-203ENST00000504173 RNASE3P12724 160 aaKnown RBP7.12□□□□□ -1.27
NUP54-203ENST00000504173 RPS20P60866 119 aaKnown RBP7.12□□□□□ -1.27
NUP54-203ENST00000504173 RPL23P62829 140 aaKnown RBP7.12□□□□□ -1.27
NUP54-203ENST00000504173 LGALS9BQ3B8N2 356 aa7.12□□□□□ -1.27
NUP54-203ENST00000504173 DNLZQ5SXM8 178 aa7.12□□□□□ -1.27
NUP54-203ENST00000504173 NUDT10Q8NFP7 164 aa7.12□□□□□ -1.27
NUP54-203ENST00000504173 NUDT11Q96G61 164 aa7.12□□□□□ -1.27
NUP54-203ENST00000504173 C9orf85Q96MD7 179 aa7.12□□□□□ -1.27
NUP54-203ENST00000504173 RPP21Q9H633 154 aaKnown RBP7.12□□□□□ -1.27
NUP54-203ENST00000504173 TRGV2A0A075B6R0 118 aa7.11□□□□□ -1.27
NUP54-203ENST00000504173 GATCO43716 136 aaKnown RBP7.11□□□□□ -1.27
NUP54-203ENST00000504173 ARMS2P0C7Q2 107 aa7.11□□□□□ -1.27
NUP54-203ENST00000504173 HTN3P15516 51 aa7.11□□□□□ -1.27
NUP54-203ENST00000504173 FAM231DQ6ZW35 169 aa7.11□□□□□ -1.27
NUP54-203ENST00000504173 LINC00612Q8N6U2 182 aa7.11□□□□□ -1.27
NUP54-203ENST00000504173 PHLDA1Q8WV24 401 aaPredicted RBP7.11□□□□□ -1.27
NUP54-203ENST00000504173 ISOC2Q96AB3 205 aa7.11□□□□□ -1.27
NUP54-203ENST00000504173 IL36BQ9NZH7 164 aa7.11□□□□□ -1.27
NUP54-203ENST00000504173 DEFB131BA0A096LNP1 70 aa7.1□□□□□ -1.27
NUP54-203ENST00000504173 TRAV10A0A0B4J240 114 aa7.1□□□□□ -1.27
NUP54-203ENST00000504173 TMEM218A2RU14 115 aa7.1□□□□□ -1.27
NUP54-203ENST00000504173 F8W036 122 aa7.1□□□□□ -1.27
NUP54-203ENST00000504173 ATP5G1P05496 136 aa7.1□□□□□ -1.27
NUP54-203ENST00000504173 GZMBP10144 247 aa7.1□□□□□ -1.27
NUP54-203ENST00000504173 ZNF575Q86XF7 245 aa7.1□□□□□ -1.27
NUP54-203ENST00000504173 C15orf54Q8N8G6 183 aa7.1□□□□□ -1.27
NUP54-203ENST00000504173 SYT8Q8NBV8 401 aa7.1□□□□□ -1.27
NUP54-203ENST00000504173 RASL10AQ92737 203 aa7.1□□□□□ -1.27
NUP54-203ENST00000504173 TPPP3Q9BW30 176 aa7.1□□□□□ -1.27
NUP54-203ENST00000504173 OSTCQ9NRP0 149 aa7.1□□□□□ -1.27
NUP54-203ENST00000504173 PHLDA3Q9Y5J5 127 aa7.1□□□□□ -1.27
NUP54-203ENST00000504173 NUPR2A6NF83 97 aa7.09□□□□□ -1.27
NUP54-203ENST00000504173 LY6G6CO95867 125 aa7.09□□□□□ -1.27
NUP54-203ENST00000504173 ZNF876PQ49A33 203 aa7.09□□□□□ -1.27
NUP54-203ENST00000504173 FER1L6-AS1Q8NA97 138 aa7.09□□□□□ -1.27
NUP54-203ENST00000504173 SFRP2Q96HF1 295 aa7.09□□□□□ -1.27
NUP54-203ENST00000504173 C18orf15Q96N68 181 aa7.09□□□□□ -1.27
NUP54-203ENST00000504173 SCRT2Q9NQ03 307 aa7.09□□□□□ -1.27
NUP54-203ENST00000504173 DYNC1H1Q14204 4646 aaKnown RBP7.08□□□□□ -1.28
NUP54-203ENST00000504173 A8MWL6 223 aa7.08□□□□□ -1.28
NUP54-203ENST00000504173 F5H768 121 aa7.08□□□□□ -1.28
NUP54-203ENST00000504173 M0R381 172 aa7.08□□□□□ -1.28
NUP54-203ENST00000504173 SNAI2O43623 268 aa7.08□□□□□ -1.28
NUP54-203ENST00000504173 IGHV3-53P01767 116 aa7.08□□□□□ -1.28
NUP54-203ENST00000504173 OR5AL1P0C617 328 aa7.08□□□□□ -1.28
NUP54-203ENST00000504173 IGLC6P0CF74 106 aa7.08□□□□□ -1.28
NUP54-203ENST00000504173 ADCYAP1P18509 176 aa7.08□□□□□ -1.28
NUP54-203ENST00000504173 PNRC1Q12796 327 aaPredicted RBP7.08□□□□□ -1.28
NUP54-203ENST00000504173 CT83Q5H943 113 aa7.08□□□□□ -1.28
NUP54-203ENST00000504173 CEMP1Q6PRD7 247 aaPredicted RBP7.08□□□□□ -1.28
NUP54-203ENST00000504173 ZFP82Q8N141 532 aa7.08□□□□□ -1.28
NUP54-203ENST00000504173 OR10G8Q8NGN5 311 aa7.08□□□□□ -1.28
NUP54-203ENST00000504173 PTH2Q96A98 100 aa7.08□□□□□ -1.28
NUP54-203ENST00000504173 SSBP4Q9BWG4 385 aaPredicted RBP7.08□□□□□ -1.28
NUP54-203ENST00000504173 DMBT1Q9UGM3 2413 aaPredicted RBP7.07□□□□□ -1.28
NUP54-203ENST00000504173 TRAV4A0A0B4J268 109 aa7.07□□□□□ -1.28
NUP54-203ENST00000504173 MUC21A0A0G2JKD1 596 aa7.07□□□□□ -1.28
NUP54-203ENST00000504173 MUC21A0A140T8X8 626 aa7.07□□□□□ -1.28
NUP54-203ENST00000504173 A0A1W2PPQ1 181 aa7.07□□□□□ -1.28
NUP54-203ENST00000504173 PIK3CD-AS1Q5SR53 167 aa7.07□□□□□ -1.28
NUP54-203ENST00000504173 SPANXN1Q5VSR9 72 aa7.07□□□□□ -1.28
NUP54-203ENST00000504173 OR4C5Q8NGB2 326 aa7.07□□□□□ -1.28
NUP54-203ENST00000504173 OR10AG1Q8NH19 301 aa7.07□□□□□ -1.28
NUP54-203ENST00000504173 NDUFAF3Q9BU61 184 aa7.07□□□□□ -1.28
NUP54-203ENST00000504173 SEC11CQ9BY50 192 aa7.07□□□□□ -1.28
NUP54-203ENST00000504173 KLK5Q9Y337 293 aaPredicted RBP7.07□□□□□ -1.28
NUP54-203ENST00000504173 V9GYV3 84 aa7.07□□□□□ -1.28
NUP54-203ENST00000504173 DNAH11Q96DT5 4516 aa7.07□□□□□ -1.28
NUP54-203ENST00000504173 A8MWV9 139 aa7.06□□□□□ -1.28
NUP54-203ENST00000504173 F2Z2F3 143 aa7.06□□□□□ -1.28
NUP54-203ENST00000504173 RS1O15537 224 aa7.06□□□□□ -1.28
NUP54-203ENST00000504173 CTRLP40313 264 aa7.06□□□□□ -1.28
NUP54-203ENST00000504173 SSTP61278 116 aa7.06□□□□□ -1.28
NUP54-203ENST00000504173 CACNG7P62955 275 aa7.06□□□□□ -1.28
NUP54-203ENST00000504173 LYZL1Q6UWQ5 148 aa7.06□□□□□ -1.28
NUP54-203ENST00000504173 POM121L12Q8N7R1 296 aa7.06□□□□□ -1.28
NUP54-203ENST00000504173 TSKUQ8WUA8 353 aa7.06□□□□□ -1.28
NUP54-203ENST00000504173 GTSF1Q8WW33 167 aa7.06□□□□□ -1.28
NUP54-203ENST00000504173 ZNF479Q96JC4 524 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms