RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 OR10G9Q8NGN4 311 aa8.41□□□□□ -1.06
SKA1-205ENST00000494518 OR10G7Q8NGN6 311 aa8.41□□□□□ -1.06
SKA1-205ENST00000494518 NDFIP1Q9BT67 221 aa8.41□□□□□ -1.06
SKA1-205ENST00000494518 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.4□□□□□ -1.06
SKA1-205ENST00000494518 PGPEP1LA6NFU8 196 aa8.4□□□□□ -1.06
SKA1-205ENST00000494518 PET100P0DJ07 73 aa8.4□□□□□ -1.06
SKA1-205ENST00000494518 ATP6V0E2Q8NHE4 81 aa8.4□□□□□ -1.06
SKA1-205ENST00000494518 GTSF1LQ9H1H1 148 aa8.4□□□□□ -1.06
SKA1-205ENST00000494518 LRP1Q07954 4544 aaKnown RBP8.4□□□□□ -1.06
SKA1-205ENST00000494518 TRBV6-4A0A1B0GX49 114 aa8.39□□□□□ -1.07
SKA1-205ENST00000494518 GAGE12JA6NER3 117 aa8.39□□□□□ -1.07
SKA1-205ENST00000494518 CDC34P49427 236 aaPredicted RBP8.39□□□□□ -1.07
SKA1-205ENST00000494518 GAGE1Q13065 139 aa8.39□□□□□ -1.07
SKA1-205ENST00000494518 GAGE4Q13068 117 aa8.39□□□□□ -1.07
SKA1-205ENST00000494518 GAGE5Q13069 117 aa8.39□□□□□ -1.07
SKA1-205ENST00000494518 LINC01620Q4KN68 170 aa8.39□□□□□ -1.07
SKA1-205ENST00000494518 GAGE13Q4V321 117 aa8.39□□□□□ -1.07
SKA1-205ENST00000494518 LCE3BQ5TA77 95 aa8.39□□□□□ -1.07
SKA1-205ENST00000494518 PRNTQ86SH4 94 aa8.39□□□□□ -1.07
SKA1-205ENST00000494518 C9orf85Q96MD7 179 aa8.39□□□□□ -1.07
SKA1-205ENST00000494518 MRPL18Q9H0U6 180 aaKnown RBP8.39□□□□□ -1.07
SKA1-205ENST00000494518 PSG8Q9UQ74 426 aa8.39□□□□□ -1.07
SKA1-205ENST00000494518 TCRAP04437 139 aa8.38□□□□□ -1.07
SKA1-205ENST00000494518 RNASE3P12724 160 aaKnown RBP8.38□□□□□ -1.07
SKA1-205ENST00000494518 HSD17B11Q8NBQ5 300 aa8.38□□□□□ -1.07
SKA1-205ENST00000494518 Q9UF83 564 aa8.38□□□□□ -1.07
SKA1-205ENST00000494518 FAT3Q8TDW7 4589 aa8.37□□□□□ -1.07
SKA1-205ENST00000494518 TAAR5O14804 337 aa8.37□□□□□ -1.07
SKA1-205ENST00000494518 GCHFRP30047 84 aa8.37□□□□□ -1.07
SKA1-205ENST00000494518 SMUG1Q53HV7 270 aa8.37□□□□□ -1.07
SKA1-205ENST00000494518 DAZ4Q86SG3 579 aaKnown RBP8.37□□□□□ -1.07
SKA1-205ENST00000494518 ARL6IP6Q8N6S5 226 aa8.37□□□□□ -1.07
SKA1-205ENST00000494518 C5orf17Q8NAS9 161 aa8.37□□□□□ -1.07
SKA1-205ENST00000494518 OR2T35Q8NGX2 323 aa8.37□□□□□ -1.07
SKA1-205ENST00000494518 MARVELD1Q9BSK0 173 aa8.37□□□□□ -1.07
SKA1-205ENST00000494518 TM2D2Q9BX73 214 aa8.37□□□□□ -1.07
SKA1-205ENST00000494518 PARLQ9H300 379 aa8.37□□□□□ -1.07
SKA1-205ENST00000494518 JPT2Q9H910 190 aa8.37□□□□□ -1.07
SKA1-205ENST00000494518 DAZ3Q9NR90 486 aaKnown RBP8.37□□□□□ -1.07
SKA1-205ENST00000494518 TRAV34A0A0B4J273 112 aa8.36□□□□□ -1.07
SKA1-205ENST00000494518 A6NHS1 94 aa8.36□□□□□ -1.07
SKA1-205ENST00000494518 GGTLC3B5MD39 225 aa8.36□□□□□ -1.07
SKA1-205ENST00000494518 IGLV2-11P01706 119 aa8.36□□□□□ -1.07
SKA1-205ENST00000494518 H2AFB1P0C5Y9 115 aa8.36□□□□□ -1.07
SKA1-205ENST00000494518 STAG3L2P0CL84 134 aa8.36□□□□□ -1.07
SKA1-205ENST00000494518 STAG3L3P0CL85 134 aa8.36□□□□□ -1.07
SKA1-205ENST00000494518 MGST1P10620 155 aaKnown RBP8.36□□□□□ -1.07
SKA1-205ENST00000494518 SUMO1P63165 101 aaKnown RBP8.36□□□□□ -1.07
SKA1-205ENST00000494518 FLI1Q01543 452 aaPredicted RBP8.36□□□□□ -1.07
SKA1-205ENST00000494518 LAGE3Q14657 143 aa8.36□□□□□ -1.07
SKA1-205ENST00000494518 LGALSLQ3ZCW2 172 aaPredicted RBP8.36□□□□□ -1.07
SKA1-205ENST00000494518 ZFP69Q49AA0 526 aa8.36□□□□□ -1.07
SKA1-205ENST00000494518 LINC00299Q6ZSB3 139 aa8.36□□□□□ -1.07
SKA1-205ENST00000494518 BAALCQ8WXS3 180 aa8.36□□□□□ -1.07
SKA1-205ENST00000494518 RAB24Q969Q5 203 aa8.36□□□□□ -1.07
SKA1-205ENST00000494518 DNAJC30Q96LL9 226 aa8.36□□□□□ -1.07
SKA1-205ENST00000494518 SAMD10Q9BYL1 202 aa8.36□□□□□ -1.07
SKA1-205ENST00000494518 SERTM2A0A1B0GWG4 89 aa8.35□□□□□ -1.07
SKA1-205ENST00000494518 K7EQM0 130 aa8.35□□□□□ -1.07
SKA1-205ENST00000494518 CIDEAO60543 219 aa8.35□□□□□ -1.07
SKA1-205ENST00000494518 S100A4P26447 101 aaKnown RBP8.35□□□□□ -1.07
SKA1-205ENST00000494518 C14orf178Q8N769 122 aaPredicted RBP8.35□□□□□ -1.07
SKA1-205ENST00000494518 CYB561D1Q8N8Q1 229 aa8.35□□□□□ -1.07
SKA1-205ENST00000494518 LINC00479Q96M42 142 aa8.35□□□□□ -1.07
SKA1-205ENST00000494518 SH3BGRL3Q9H299 93 aa8.35□□□□□ -1.07
SKA1-205ENST00000494518 EPDR1Q9UM22 224 aa8.35□□□□□ -1.07
SKA1-205ENST00000494518 IGKV3D-20A0A0C4DH25 116 aa8.34□□□□□ -1.07
SKA1-205ENST00000494518 PLA2G1BP04054 148 aaKnown RBP8.34□□□□□ -1.07
SKA1-205ENST00000494518 LINC00694P0DN24 101 aa8.34□□□□□ -1.07
SKA1-205ENST00000494518 ATP6V0CP27449 155 aa8.34□□□□□ -1.07
SKA1-205ENST00000494518 SSBP4Q9BWG4 385 aaPredicted RBP8.34□□□□□ -1.07
SKA1-205ENST00000494518 PKHD1L1Q86WI1 4243 aa8.34□□□□□ -1.07
SKA1-205ENST00000494518 H3BVH4 76 aa8.33□□□□□ -1.08
SKA1-205ENST00000494518 C1QBP02746 253 aa8.33□□□□□ -1.08
SKA1-205ENST00000494518 Q6ZSA8 131 aa8.33□□□□□ -1.08
SKA1-205ENST00000494518 OR2G3Q8NGZ4 309 aa8.33□□□□□ -1.08
SKA1-205ENST00000494518 SUN5Q8TC36 379 aa8.33□□□□□ -1.08
SKA1-205ENST00000494518 TRAV8-3A0A0A6YYJ7 113 aa8.32□□□□□ -1.08
SKA1-205ENST00000494518 A8MWV9 139 aa8.32□□□□□ -1.08
SKA1-205ENST00000494518 M0R036 132 aa8.32□□□□□ -1.08
SKA1-205ENST00000494518 ASIPP42127 132 aa8.32□□□□□ -1.08
SKA1-205ENST00000494518 DEFA1P59665 94 aa8.32□□□□□ -1.08
SKA1-205ENST00000494518 DEFA3P59666 94 aa8.32□□□□□ -1.08
SKA1-205ENST00000494518 UBE2G2P60604 165 aa8.32□□□□□ -1.08
SKA1-205ENST00000494518 FAM74A4Q5TZK3 123 aa8.32□□□□□ -1.08
SKA1-205ENST00000494518 SCXQ7RTU7 201 aa8.32□□□□□ -1.08
SKA1-205ENST00000494518 PTH2Q96A98 100 aa8.32□□□□□ -1.08
SKA1-205ENST00000494518 KRTAP4-12Q9BQ66 201 aa8.32□□□□□ -1.08
SKA1-205ENST00000494518 ALG5Q9Y673 324 aa8.32□□□□□ -1.08
SKA1-205ENST00000494518 ARL2-SNX15V9GYD0 113 aa8.32□□□□□ -1.08
SKA1-205ENST00000494518 HMCN2Q8NDA2 5059 aa8.31□□□□□ -1.08
SKA1-205ENST00000494518 IGKV2D-24A0A075B6R9 120 aa8.31□□□□□ -1.08
SKA1-205ENST00000494518 GRIFINA4D1Z8 144 aa8.31□□□□□ -1.08
SKA1-205ENST00000494518 RBFOX3A6NFN3 312 aa8.31□□□□□ -1.08
SKA1-205ENST00000494518 CXorf1O96002 111 aa8.31□□□□□ -1.08
SKA1-205ENST00000494518 ZFP2Q6ZN57 461 aa8.31□□□□□ -1.08
SKA1-205ENST00000494518 PSMG3Q9BT73 122 aaPredicted RBP8.31□□□□□ -1.08
SKA1-205ENST00000494518 TMEM167BQ9NRX6 74 aa8.31□□□□□ -1.08
SKA1-205ENST00000494518 KLK12Q9UKR0 248 aa8.31□□□□□ -1.08
SKA1-205ENST00000494518 A0A087WWL8 130 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms