RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 IGHV3-73A0A0B4J1V6 119 aa12.43□□□□□ -0.42
COL9A3-214ENST00000490398 TRBV6-1A0A0K0K1D8 114 aa12.43□□□□□ -0.42
COL9A3-214ENST00000490398 M0R036 132 aa12.43□□□□□ -0.42
COL9A3-214ENST00000490398 RS1O15537 224 aa12.43□□□□□ -0.42
COL9A3-214ENST00000490398 LTAP01374 205 aa12.43□□□□□ -0.42
COL9A3-214ENST00000490398 AKR1C3P42330 323 aa12.43□□□□□ -0.42
COL9A3-214ENST00000490398 UBE2G1P62253 170 aa12.43□□□□□ -0.42
COL9A3-214ENST00000490398 ZNF506Q5JVG8 444 aa12.43□□□□□ -0.42
COL9A3-214ENST00000490398 GRIFINA4D1Z8 144 aa12.42□□□□□ -0.42
COL9A3-214ENST00000490398 KRBOX1C9JBD0 128 aa12.42□□□□□ -0.42
COL9A3-214ENST00000490398 ORM1P02763 201 aa12.42□□□□□ -0.42
COL9A3-214ENST00000490398 GATA1P15976 413 aaPredicted RBP12.42□□□□□ -0.42
COL9A3-214ENST00000490398 TNP2Q05952 138 aa12.42□□□□□ -0.42
COL9A3-214ENST00000490398 MRPL23Q16540 153 aaKnown RBP12.42□□□□□ -0.42
COL9A3-214ENST00000490398 C6orf223Q8N319 242 aa12.42□□□□□ -0.42
COL9A3-214ENST00000490398 ZFP30Q9Y2G7 519 aa12.42□□□□□ -0.42
COL9A3-214ENST00000490398 TMSB15BA0A087X1C1 80 aa12.41□□□□□ -0.42
COL9A3-214ENST00000490398 B4DEV8 164 aa12.41□□□□□ -0.42
COL9A3-214ENST00000490398 NXPH4O95158 308 aa12.41□□□□□ -0.42
COL9A3-214ENST00000490398 TCEAL7Q9BRU2 100 aa12.41□□□□□ -0.42
COL9A3-214ENST00000490398 JPT2Q9H910 190 aa12.41□□□□□ -0.42
COL9A3-214ENST00000490398 A0A1B0GVG6 124 aa12.4□□□□□ -0.42
COL9A3-214ENST00000490398 ZNF674Q2M3X9 581 aa12.4□□□□□ -0.42
COL9A3-214ENST00000490398 Q6ZSN1 163 aa12.4□□□□□ -0.42
COL9A3-214ENST00000490398 NEGR1Q7Z3B1 354 aa12.4□□□□□ -0.42
COL9A3-214ENST00000490398 AKAP14Q86UN6 197 aa12.4□□□□□ -0.42
COL9A3-214ENST00000490398 C9orf62Q8N4C0 152 aa12.4□□□□□ -0.42
COL9A3-214ENST00000490398 PTH2Q96A98 100 aa12.4□□□□□ -0.42
COL9A3-214ENST00000490398 GNG13Q9P2W3 67 aa12.4□□□□□ -0.42
COL9A3-214ENST00000490398 H3BVH4 76 aa12.39□□□□□ -0.43
COL9A3-214ENST00000490398 ASIPP42127 132 aa12.39□□□□□ -0.43
COL9A3-214ENST00000490398 SULT1A2P50226 295 aa12.39□□□□□ -0.43
COL9A3-214ENST00000490398 SOHLH1Q5JUK2 328 aa12.39□□□□□ -0.43
COL9A3-214ENST00000490398 FAM162BQ5T6X4 162 aa12.39□□□□□ -0.43
COL9A3-214ENST00000490398 SLC25A29Q8N8R3 303 aa12.39□□□□□ -0.43
COL9A3-214ENST00000490398 ARMS2P0C7Q2 107 aa12.38□□□□□ -0.43
COL9A3-214ENST00000490398 S100A4P26447 101 aaKnown RBP12.38□□□□□ -0.43
COL9A3-214ENST00000490398 SRIP30626 198 aa12.38□□□□□ -0.43
COL9A3-214ENST00000490398 SLC51BQ86UW2 128 aa12.38□□□□□ -0.43
COL9A3-214ENST00000490398 DERL1Q9BUN8 251 aa12.38□□□□□ -0.43
COL9A3-214ENST00000490398 MLST8Q9BVC4 326 aa12.38□□□□□ -0.43
COL9A3-214ENST00000490398 SAMD10Q9BYL1 202 aa12.38□□□□□ -0.43
COL9A3-214ENST00000490398 DNAH8Q96JB1 4490 aa12.38□□□□□ -0.43
COL9A3-214ENST00000490398 TRAV1-1A0A0B4J248 108 aa12.37□□□□□ -0.43
COL9A3-214ENST00000490398 SIVA1O15304 175 aa12.37□□□□□ -0.43
COL9A3-214ENST00000490398 RPL19P84098 196 aaKnown RBP12.37□□□□□ -0.43
COL9A3-214ENST00000490398 DNLZQ5SXM8 178 aa12.37□□□□□ -0.43
COL9A3-214ENST00000490398 DMRTA1Q5VZB9 504 aa12.37□□□□□ -0.43
COL9A3-214ENST00000490398 WFDC10BQ8IUB3 73 aa12.37□□□□□ -0.43
COL9A3-214ENST00000490398 PCNPQ8WW12 178 aaKnown RBP12.37□□□□□ -0.43
COL9A3-214ENST00000490398 IL36BQ9NZH7 164 aa12.37□□□□□ -0.43
COL9A3-214ENST00000490398 Q9UF83 564 aa12.37□□□□□ -0.43
COL9A3-214ENST00000490398 RAB5CP51148 216 aa12.36□□□□□ -0.43
COL9A3-214ENST00000490398 LINC01559Q495D7 138 aa12.36□□□□□ -0.43
COL9A3-214ENST00000490398 PARLQ9H300 379 aa12.36□□□□□ -0.43
COL9A3-214ENST00000490398 TNFRSF18Q9Y5U5 241 aa12.36□□□□□ -0.43
COL9A3-214ENST00000490398 ABCA13Q86UQ4 5058 aa12.35□□□□□ -0.43
COL9A3-214ENST00000490398 RPL35P42766 123 aaKnown RBP12.35□□□□□ -0.43
COL9A3-214ENST00000490398 TTC32Q5I0X7 151 aa12.35□□□□□ -0.43
COL9A3-214ENST00000490398 UFSP1Q6NVU6 142 aa12.35□□□□□ -0.43
COL9A3-214ENST00000490398 BAGE2Q86Y30 109 aa12.35□□□□□ -0.43
COL9A3-214ENST00000490398 SCRT2Q9NQ03 307 aa12.35□□□□□ -0.43
COL9A3-214ENST00000490398 A0A1W2PPQ1 181 aa12.34□□□□□ -0.43
COL9A3-214ENST00000490398 LINC00315P59091 139 aa12.34□□□□□ -0.43
COL9A3-214ENST00000490398 EIF5AL1Q6IS14 154 aaKnown RBP12.34□□□□□ -0.43
COL9A3-214ENST00000490398 C11orf52Q96A22 123 aa12.34□□□□□ -0.43
COL9A3-214ENST00000490398 MANBALQ9NQG1 85 aa12.34□□□□□ -0.43
COL9A3-214ENST00000490398 PCLOQ9Y6V0 5065 aa12.34□□□□□ -0.43
COL9A3-214ENST00000490398 TRBV6-4A0A1B0GX49 114 aa12.33□□□□□ -0.44
COL9A3-214ENST00000490398 S100A9P06702 114 aaKnown RBP12.33□□□□□ -0.44
COL9A3-214ENST00000490398 TXNDC17Q9BRA2 123 aa12.33□□□□□ -0.44
COL9A3-214ENST00000490398 RAB19A4D1S5 217 aa12.32□□□□□ -0.44
COL9A3-214ENST00000490398 IGLV2-8P01709 118 aa12.32□□□□□ -0.44
COL9A3-214ENST00000490398 NKX2-5P52952 324 aaPredicted RBP12.32□□□□□ -0.44
COL9A3-214ENST00000490398 RHOHQ15669 191 aa12.32□□□□□ -0.44
COL9A3-214ENST00000490398 PRR27Q6MZM9 219 aa12.32□□□□□ -0.44
COL9A3-214ENST00000490398 C14orf178Q8N769 122 aaPredicted RBP12.32□□□□□ -0.44
COL9A3-214ENST00000490398 A8MWV9 139 aa12.31□□□□□ -0.44
COL9A3-214ENST00000490398 M0R381 172 aa12.31□□□□□ -0.44
COL9A3-214ENST00000490398 CIDEAO60543 219 aa12.31□□□□□ -0.44
COL9A3-214ENST00000490398 Q6ZRN7 208 aaPredicted RBP12.31□□□□□ -0.44
COL9A3-214ENST00000490398 BOLA1Q9Y3E2 137 aa12.31□□□□□ -0.44
COL9A3-214ENST00000490398 A0A087WWL8 130 aa12.3□□□□□ -0.44
COL9A3-214ENST00000490398 MGST1P10620 155 aaKnown RBP12.3□□□□□ -0.44
COL9A3-214ENST00000490398 CENPWQ5EE01 88 aa12.3□□□□□ -0.44
COL9A3-214ENST00000490398 PIK3CD-AS1Q5SR53 167 aa12.3□□□□□ -0.44
COL9A3-214ENST00000490398 ZFP2Q6ZN57 461 aa12.3□□□□□ -0.44
COL9A3-214ENST00000490398 PRADC1Q9BSG0 188 aa12.3□□□□□ -0.44
COL9A3-214ENST00000490398 PHLDA3Q9Y5J5 127 aa12.3□□□□□ -0.44
COL9A3-214ENST00000490398 MUC21A0A0G2JKD1 596 aa12.29□□□□□ -0.44
COL9A3-214ENST00000490398 MUC21A0A140T8X8 626 aa12.29□□□□□ -0.44
COL9A3-214ENST00000490398 GAGE12JA6NER3 117 aa12.29□□□□□ -0.44
COL9A3-214ENST00000490398 CRYGDP07320 174 aa12.29□□□□□ -0.44
COL9A3-214ENST00000490398 GAGE1Q13065 139 aa12.29□□□□□ -0.44
COL9A3-214ENST00000490398 GAGE4Q13068 117 aa12.29□□□□□ -0.44
COL9A3-214ENST00000490398 GAGE5Q13069 117 aa12.29□□□□□ -0.44
COL9A3-214ENST00000490398 GAGE13Q4V321 117 aa12.29□□□□□ -0.44
COL9A3-214ENST00000490398 ALKAL2Q6UX46 152 aa12.29□□□□□ -0.44
COL9A3-214ENST00000490398 SFRP2Q96HF1 295 aa12.29□□□□□ -0.44
COL9A3-214ENST00000490398 TRBV20OR9-2A0A075B6H5 130 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms