RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 TIMM17BO60830 172 aa5.71□□□□□ -1.5
SYNE1-228ENST00000490135 MAPK1IP1LQ8NDC0 245 aa5.71□□□□□ -1.5
SYNE1-228ENST00000490135 ZNF318Q5VUA4 2279 aa5.71□□□□□ -1.5
SYNE1-228ENST00000490135 IGKV1-6A0A0C4DH72 117 aa5.71□□□□□ -1.5
SYNE1-228ENST00000490135 A0A0G2JNJ9 132 aa5.71□□□□□ -1.5
SYNE1-228ENST00000490135 NDUFA1O15239 70 aa5.71□□□□□ -1.5
SYNE1-228ENST00000490135 HIST2H2BCQ6DN03 193 aa5.71□□□□□ -1.5
SYNE1-228ENST00000490135 SDIM1Q6ZPB5 146 aa5.71□□□□□ -1.5
SYNE1-228ENST00000490135 Q9UFV3 132 aa5.71□□□□□ -1.5
SYNE1-228ENST00000490135 HEATR5BQ9P2D3 2071 aa5.7□□□□□ -1.5
SYNE1-228ENST00000490135 SPART-AS1P0CW21 52 aa5.7□□□□□ -1.5
SYNE1-228ENST00000490135 PMAIP1Q13794 54 aa5.7□□□□□ -1.5
SYNE1-228ENST00000490135 C5orf38Q86SI9 138 aa5.7□□□□□ -1.5
SYNE1-228ENST00000490135 CLEC2BQ92478 149 aa5.7□□□□□ -1.5
SYNE1-228ENST00000490135 MLST8Q9BVC4 326 aa5.7□□□□□ -1.5
SYNE1-228ENST00000490135 COL18A1P39060 1754 aa5.7□□□□□ -1.5
SYNE1-228ENST00000490135 LOXL1Q08397 574 aaPredicted RBP5.7□□□□□ -1.5
SYNE1-228ENST00000490135 TMEM14BQ9NUH8 114 aa5.7□□□□□ -1.5
SYNE1-228ENST00000490135 MAP1BP46821 2468 aaKnown RBP5.7□□□□□ -1.5
SYNE1-228ENST00000490135 SMIM26A0A096LP01 95 aa5.7□□□□□ -1.5
SYNE1-228ENST00000490135 TRBV12-3P01733 135 aa5.7□□□□□ -1.5
SYNE1-228ENST00000490135 GREB1LQ9C091 1923 aaPredicted RBP5.7□□□□□ -1.5
SYNE1-228ENST00000490135 IGHV4OR15-8A0A075B7B6 117 aa5.7□□□□□ -1.5
SYNE1-228ENST00000490135 A0A087WW49 117 aa5.7□□□□□ -1.5
SYNE1-228ENST00000490135 TRBV6-6A0A0A6YYG2 114 aa5.7□□□□□ -1.5
SYNE1-228ENST00000490135 A0A1B0GXF2 115 aa5.7□□□□□ -1.5
SYNE1-228ENST00000490135 TRPM6Q9BX84 2022 aa5.7□□□□□ -1.5
SYNE1-228ENST00000490135 UBR3Q6ZT12 1888 aa5.7□□□□□ -1.5
SYNE1-228ENST00000490135 IL17DQ8TAD2 202 aa5.69□□□□□ -1.5
SYNE1-228ENST00000490135 ALPK3Q96L96 1907 aa5.69□□□□□ -1.5
SYNE1-228ENST00000490135 NCR3O14931 201 aa5.69□□□□□ -1.5
SYNE1-228ENST00000490135 SCN5AQ14524 2016 aa5.69□□□□□ -1.5
SYNE1-228ENST00000490135 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.69□□□□□ -1.5
SYNE1-228ENST00000490135 IGKV2-29A2NJV5 120 aaPredicted RBP5.69□□□□□ -1.5
SYNE1-228ENST00000490135 GYPEP15421 78 aa5.69□□□□□ -1.5
SYNE1-228ENST00000490135 Q0VFX4 171 aa5.69□□□□□ -1.5
SYNE1-228ENST00000490135 IGLV10-54A0A075B6I4 117 aa5.69□□□□□ -1.5
SYNE1-228ENST00000490135 ELANEP08246 267 aa5.69□□□□□ -1.5
SYNE1-228ENST00000490135 LYPD2Q6UXB3 125 aa5.69□□□□□ -1.5
SYNE1-228ENST00000490135 SND1-IT1Q9HBX3 110 aa5.69□□□□□ -1.5
SYNE1-228ENST00000490135 DOCK4Q8N1I0 1966 aa5.69□□□□□ -1.5
SYNE1-228ENST00000490135 PINLYPA6NC86 204 aa5.69□□□□□ -1.5
SYNE1-228ENST00000490135 TMEM105Q8N8V8 129 aa5.69□□□□□ -1.5
SYNE1-228ENST00000490135 ANK1P16157 1881 aa5.68□□□□□ -1.5
SYNE1-228ENST00000490135 IGKV2D-26A0A0A0MRZ7 120 aa5.68□□□□□ -1.5
SYNE1-228ENST00000490135 LINC00473A8K010 186 aa5.68□□□□□ -1.5
SYNE1-228ENST00000490135 C20orf197Q8N268 126 aa5.68□□□□□ -1.5
SYNE1-228ENST00000490135 UPK3BQ9BT76 320 aa5.68□□□□□ -1.5
SYNE1-228ENST00000490135 IGHV7-4-1A0A0J9YVY3 117 aa5.68□□□□□ -1.5
SYNE1-228ENST00000490135 EPOPA6NHQ4 379 aa5.68□□□□□ -1.5
SYNE1-228ENST00000490135 MAPKAPK5-AS1Q8N8E1 139 aa5.68□□□□□ -1.5
SYNE1-228ENST00000490135 RNF138Q8WVD3 245 aa5.68□□□□□ -1.5
SYNE1-228ENST00000490135 C16orf74Q96GX8 76 aa5.68□□□□□ -1.5
SYNE1-228ENST00000490135 HEATR5AQ86XA9 2040 aa5.68□□□□□ -1.5
SYNE1-228ENST00000490135 JMJD7-PLA2G4BH0Y9G9 81 aa5.68□□□□□ -1.5
SYNE1-228ENST00000490135 DIRC1Q969H9 104 aa5.68□□□□□ -1.5
SYNE1-228ENST00000490135 DOCK11Q5JSL3 2073 aa5.68□□□□□ -1.5
SYNE1-228ENST00000490135 IGLV3-32A0A0A0MS00 114 aa5.68□□□□□ -1.5
SYNE1-228ENST00000490135 G3V318 75 aa5.68□□□□□ -1.5
SYNE1-228ENST00000490135 DENND4CQ5VZ89 1909 aa5.68□□□□□ -1.5
SYNE1-228ENST00000490135 LRCOL1A6NCL2 159 aa5.67□□□□□ -1.5
SYNE1-228ENST00000490135 LY6HO94772 140 aa5.67□□□□□ -1.5
SYNE1-228ENST00000490135 C14orf177Q52M58 125 aa5.67□□□□□ -1.5
SYNE1-228ENST00000490135 NPBQ8NG41 125 aa5.67□□□□□ -1.5
SYNE1-228ENST00000490135 PYGO1Q9Y3Y4 419 aa5.67□□□□□ -1.5
SYNE1-228ENST00000490135 TRIP12Q14669 1992 aaPredicted RBP5.67□□□□□ -1.5
SYNE1-228ENST00000490135 P0DMU3 169 aa5.67□□□□□ -1.5
SYNE1-228ENST00000490135 FAM231AP0DMU4 169 aa5.67□□□□□ -1.5
SYNE1-228ENST00000490135 FAM231CP0DMU5 169 aa5.67□□□□□ -1.5
SYNE1-228ENST00000490135 ZNF106Q9H2Y7 1883 aaKnown RBP5.67□□□□□ -1.5
SYNE1-228ENST00000490135 K7EQD1 137 aa5.67□□□□□ -1.5
SYNE1-228ENST00000490135 FXYD5Q96DB9 178 aa5.67□□□□□ -1.5
SYNE1-228ENST00000490135 ATP5EP56381 51 aaPredicted RBP5.67□□□□□ -1.5
SYNE1-228ENST00000490135 PRR25Q96S07 402 aa5.67□□□□□ -1.5
SYNE1-228ENST00000490135 IGLV3-12A0A075B6K2 115 aa5.67□□□□□ -1.5
SYNE1-228ENST00000490135 IGHV4-59P01825 116 aa5.67□□□□□ -1.5
SYNE1-228ENST00000490135 CCL24O00175 119 aa5.66□□□□□ -1.5
SYNE1-228ENST00000490135 IGLV2-8P01709 118 aa5.66□□□□□ -1.5
SYNE1-228ENST00000490135 GP9P14770 177 aa5.66□□□□□ -1.5
SYNE1-228ENST00000490135 KNL1Q8NG31 2342 aa5.66□□□□□ -1.5
SYNE1-228ENST00000490135 LINC00205P59089 165 aa5.66□□□□□ -1.5
SYNE1-228ENST00000490135 PRR20EP86478 221 aa5.66□□□□□ -1.5
SYNE1-228ENST00000490135 PRR20CP86479 221 aa5.66□□□□□ -1.5
SYNE1-228ENST00000490135 PRR20DP86480 221 aa5.66□□□□□ -1.5
SYNE1-228ENST00000490135 PRR20BP86481 221 aa5.66□□□□□ -1.5
SYNE1-228ENST00000490135 PRR20AP86496 221 aa5.66□□□□□ -1.5
SYNE1-228ENST00000490135 TMEM61Q8N0U2 210 aa5.66□□□□□ -1.5
SYNE1-228ENST00000490135 TRAV23DV6A0A075B6W5 121 aa5.66□□□□□ -1.5
SYNE1-228ENST00000490135 MLANAQ16655 118 aa5.66□□□□□ -1.5
SYNE1-228ENST00000490135 LYPD6Q86Y78 171 aa5.66□□□□□ -1.5
SYNE1-228ENST00000490135 IGKV1D-17A0A075B6S4 117 aa5.66□□□□□ -1.5
SYNE1-228ENST00000490135 TMEM89A2RUT3 159 aa5.66□□□□□ -1.5
SYNE1-228ENST00000490135 H3BRN7 92 aa5.66□□□□□ -1.5
SYNE1-228ENST00000490135 GGNQ86UU5 652 aa5.66□□□□□ -1.5
SYNE1-228ENST00000490135 E7EQL1 145 aa5.65□□□□□ -1.5
SYNE1-228ENST00000490135 MRPS36P82909 103 aaKnown RBP5.65□□□□□ -1.5
SYNE1-228ENST00000490135 DAZ2Q13117 558 aaKnown RBP5.65□□□□□ -1.5
SYNE1-228ENST00000490135 Q6P435 159 aa5.65□□□□□ -1.5
SYNE1-228ENST00000490135 DAZ4Q86SG3 579 aaKnown RBP5.65□□□□□ -1.5
SYNE1-228ENST00000490135 DAZ3Q9NR90 486 aaKnown RBP5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms