RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 PLXNA1Q9UIW2 1896 aa2.64□□□□□ -1.99
VPS41-212ENST00000482217 MYO16Q9Y6X6 1858 aa2.64□□□□□ -1.99
VPS41-212ENST00000482217 SDK2Q58EX2 2172 aa2.64□□□□□ -1.99
VPS41-212ENST00000482217 ABCA9Q8IUA7 1624 aa2.64□□□□□ -1.99
VPS41-212ENST00000482217 RAPGEF6Q8TEU7 1601 aa2.64□□□□□ -1.99
VPS41-212ENST00000482217 COL5A3P25940 1745 aaPredicted RBP2.63□□□□□ -1.99
VPS41-212ENST00000482217 TRAV7A0A075B6U4 112 aa2.63□□□□□ -1.99
VPS41-212ENST00000482217 H3BUT2 72 aa2.63□□□□□ -1.99
VPS41-212ENST00000482217 ATOX1O00244 68 aa2.63□□□□□ -1.99
VPS41-212ENST00000482217 LYRM1O43325 122 aa2.63□□□□□ -1.99
VPS41-212ENST00000482217 ESRGQ1W209 222 aa2.63□□□□□ -1.99
VPS41-212ENST00000482217 ASB16-AS1Q495Z4 193 aa2.63□□□□□ -1.99
VPS41-212ENST00000482217 ZCCHC23Q6ZST2 131 aa2.63□□□□□ -1.99
VPS41-212ENST00000482217 COMMD6Q7Z4G1 85 aa2.63□□□□□ -1.99
VPS41-212ENST00000482217 HMGN2P46Q86SG4 172 aa2.63□□□□□ -1.99
VPS41-212ENST00000482217 LINC00269Q8N2A0 174 aa2.63□□□□□ -1.99
VPS41-212ENST00000482217 LINC00612Q8N6U2 182 aa2.63□□□□□ -1.99
VPS41-212ENST00000482217 OR8B3Q8NGG8 313 aa2.63□□□□□ -1.99
VPS41-212ENST00000482217 OR8B2Q96RD0 313 aa2.63□□□□□ -1.99
VPS41-212ENST00000482217 NDUFA12Q9UI09 145 aa2.63□□□□□ -1.99
VPS41-212ENST00000482217 RGPD2P0DJD1 1756 aa2.63□□□□□ -1.99
VPS41-212ENST00000482217 NCOA2Q15596 1464 aa2.63□□□□□ -1.99
VPS41-212ENST00000482217 PXDNQ92626 1479 aa2.63□□□□□ -1.99
VPS41-212ENST00000482217 NINQ8N4C6 2090 aa2.62□□□□□ -1.99
VPS41-212ENST00000482217 STRCP1A6NGW2 1772 aa2.62□□□□□ -1.99
VPS41-212ENST00000482217 ANKARQ7Z5J8 1434 aa2.62□□□□□ -1.99
VPS41-212ENST00000482217 ABCA5Q8WWZ7 1642 aa2.62□□□□□ -1.99
VPS41-212ENST00000482217 IGKV1D-42A0A075B6H8 117 aa2.62□□□□□ -1.99
VPS41-212ENST00000482217 SYS1-DBNDD2H3BUS1 97 aa2.62□□□□□ -1.99
VPS41-212ENST00000482217 PANO1I0J062 215 aa2.62□□□□□ -1.99
VPS41-212ENST00000482217 CRPP02741 224 aa2.62□□□□□ -1.99
VPS41-212ENST00000482217 RNASE2P10153 161 aaKnown RBP2.62□□□□□ -1.99
VPS41-212ENST00000482217 UBE2G1P62253 170 aa2.62□□□□□ -1.99
VPS41-212ENST00000482217 CCL8P80075 99 aa2.62□□□□□ -1.99
VPS41-212ENST00000482217 EIF4EBP1Q13541 118 aaPredicted RBP2.62□□□□□ -1.99
VPS41-212ENST00000482217 NNATQ16517 81 aa2.62□□□□□ -1.99
VPS41-212ENST00000482217 C12orf73Q69YU5 71 aa2.62□□□□□ -1.99
VPS41-212ENST00000482217 TMEM105Q8N8V8 129 aa2.62□□□□□ -1.99
VPS41-212ENST00000482217 MYOZ3Q8TDC0 251 aa2.62□□□□□ -1.99
VPS41-212ENST00000482217 SLX4Q8IY92 1834 aa2.62□□□□□ -1.99
VPS41-212ENST00000482217 PEAK1Q9H792 1746 aa2.62□□□□□ -1.99
VPS41-212ENST00000482217 SETBP1Q9Y6X0 1596 aa2.61□□□□□ -1.99
VPS41-212ENST00000482217 A0A1B0GUL6 1792 aa2.61□□□□□ -1.99
VPS41-212ENST00000482217 SCN4AP35499 1836 aa2.61□□□□□ -1.99
VPS41-212ENST00000482217 LTBP2Q14767 1821 aa2.61□□□□□ -1.99
VPS41-212ENST00000482217 KIF21BO75037 1637 aa2.61□□□□□ -1.99
VPS41-212ENST00000482217 LRP5O75197 1615 aa2.61□□□□□ -1.99
VPS41-212ENST00000482217 RIC1Q4ADV7 1423 aa2.61□□□□□ -1.99
VPS41-212ENST00000482217 C16orf90A8MZG2 172 aa2.61□□□□□ -1.99
VPS41-212ENST00000482217 H3BQ85 93 aa2.61□□□□□ -1.99
VPS41-212ENST00000482217 CCL16O15467 120 aa2.61□□□□□ -1.99
VPS41-212ENST00000482217 TFF1P04155 84 aa2.61□□□□□ -1.99
VPS41-212ENST00000482217 PIPP12273 146 aaPredicted RBP2.61□□□□□ -1.99
VPS41-212ENST00000482217 ZNF345Q14585 488 aa2.61□□□□□ -1.99
VPS41-212ENST00000482217 HMGN3Q15651 99 aa2.61□□□□□ -1.99
VPS41-212ENST00000482217 Q1T7F1 81 aa2.61□□□□□ -1.99
VPS41-212ENST00000482217 SPANXA2-OT1Q8N9U9 137 aa2.61□□□□□ -1.99
VPS41-212ENST00000482217 Q96M85 177 aa2.61□□□□□ -1.99
VPS41-212ENST00000482217 HIGD1BQ9P298 99 aa2.61□□□□□ -1.99
VPS41-212ENST00000482217 RABAC1Q9UI14 185 aa2.61□□□□□ -1.99
VPS41-212ENST00000482217 TRAPPC1Q9Y5R8 145 aa2.61□□□□□ -1.99
VPS41-212ENST00000482217 TMEM14AQ9Y6G1 99 aa2.61□□□□□ -1.99
VPS41-212ENST00000482217 TNS1Q9HBL0 1735 aaKnown RBP2.61□□□□□ -1.99
VPS41-212ENST00000482217 CFAP74Q9C0B2 1584 aa2.61□□□□□ -1.99
VPS41-212ENST00000482217 DOCK9Q9BZ29 2069 aa2.61□□□□□ -1.99
VPS41-212ENST00000482217 LTBP4Q8N2S1 1624 aa2.6□□□□□ -1.99
VPS41-212ENST00000482217 MAP3K4Q9Y6R4 1608 aa2.6□□□□□ -1.99
VPS41-212ENST00000482217 ITSN2Q9NZM3 1697 aa2.6□□□□□ -1.99
VPS41-212ENST00000482217 DLG5Q8TDM6 1919 aa2.6□□□□□ -1.99
VPS41-212ENST00000482217 ATP10BO94823 1461 aa2.6□□□□□ -1.99
VPS41-212ENST00000482217 TRBV10-2A0A0K0K1G8 114 aa2.6□□□□□ -1.99
VPS41-212ENST00000482217 A0A1B0GVY2 172 aa2.6□□□□□ -1.99
VPS41-212ENST00000482217 FAM168BA1KXE4 195 aa2.6□□□□□ -1.99
VPS41-212ENST00000482217 C7orf77A4D0Y5 90 aa2.6□□□□□ -1.99
VPS41-212ENST00000482217 C11orf86A6NJI1 115 aa2.6□□□□□ -1.99
VPS41-212ENST00000482217 HMSDA8MTL9 139 aa2.6□□□□□ -1.99
VPS41-212ENST00000482217 P0C880 135 aa2.6□□□□□ -1.99
VPS41-212ENST00000482217 MGST1P10620 155 aaKnown RBP2.6□□□□□ -1.99
VPS41-212ENST00000482217 CD24P25063 80 aa2.6□□□□□ -1.99
VPS41-212ENST00000482217 GNG11P61952 73 aa2.6□□□□□ -1.99
VPS41-212ENST00000482217 LYPD5Q6UWN5 251 aa2.6□□□□□ -1.99
VPS41-212ENST00000482217 SERP2Q8N6R1 65 aa2.6□□□□□ -1.99
VPS41-212ENST00000482217 C18orf32Q8TCD1 76 aa2.6□□□□□ -1.99
VPS41-212ENST00000482217 ODF3Q96PU9 254 aa2.6□□□□□ -1.99
VPS41-212ENST00000482217 RNF5Q99942 180 aa2.6□□□□□ -1.99
VPS41-212ENST00000482217 TP53TG3Q9ULZ0 132 aa2.6□□□□□ -1.99
VPS41-212ENST00000482217 ARHGAP32A7KAX9 2087 aa2.6□□□□□ -1.99
VPS41-212ENST00000482217 PTPN23Q9H3S7 1636 aa2.6□□□□□ -1.99
VPS41-212ENST00000482217 EDC4Q6P2E9 1401 aaKnown RBP2.59□□□□□ -1.99
VPS41-212ENST00000482217 PTPRMP28827 1452 aa2.59□□□□□ -1.99
VPS41-212ENST00000482217 MPDZO75970 2070 aa2.59□□□□□ -1.99
VPS41-212ENST00000482217 A0A087WXM4 84 aa2.59□□□□□ -1.99
VPS41-212ENST00000482217 TRAV17A0A0B4J275 112 aa2.59□□□□□ -1.99
VPS41-212ENST00000482217 KRTAP9-6A8MVA2 160 aa2.59□□□□□ -1.99
VPS41-212ENST00000482217 H7C2G1 150 aa2.59□□□□□ -1.99
VPS41-212ENST00000482217 SPANXN1Q5VSR9 72 aa2.59□□□□□ -1.99
VPS41-212ENST00000482217 Q5W150 140 aa2.59□□□□□ -1.99
VPS41-212ENST00000482217 DYNLRB2Q8TF09 96 aa2.59□□□□□ -1.99
VPS41-212ENST00000482217 TMEM141Q96I45 108 aa2.59□□□□□ -1.99
VPS41-212ENST00000482217 C20orf166-AS1Q96NR2 134 aa2.59□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms