RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 OR7C2O60412 319 aa11.23□□□□□ -0.61
VIM-204ENST00000478746 ZFP69Q49AA0 526 aa11.23□□□□□ -0.61
VIM-204ENST00000478746 SCGB1C1Q8TD33 95 aa11.23□□□□□ -0.61
VIM-204ENST00000478746 KCNIP2Q9NS61 270 aa11.23□□□□□ -0.61
VIM-204ENST00000478746 RNF213Q63HN8 5207 aa11.23□□□□□ -0.61
VIM-204ENST00000478746 IGHV3-73A0A0B4J1V6 119 aa11.22□□□□□ -0.61
VIM-204ENST00000478746 PFDN1O60925 122 aa11.22□□□□□ -0.61
VIM-204ENST00000478746 TYMSP04818 313 aa11.22□□□□□ -0.61
VIM-204ENST00000478746 RPL37AP61513 92 aaKnown RBP11.22□□□□□ -0.61
VIM-204ENST00000478746 ZNF345Q14585 488 aa11.22□□□□□ -0.61
VIM-204ENST00000478746 ZNF876PQ49A33 203 aa11.22□□□□□ -0.61
VIM-204ENST00000478746 CFAP126Q5VTH2 177 aa11.22□□□□□ -0.61
VIM-204ENST00000478746 HYLS1Q96M11 299 aa11.22□□□□□ -0.61
VIM-204ENST00000478746 SH3BGRL3Q9H299 93 aa11.22□□□□□ -0.61
VIM-204ENST00000478746 TRAV21A0A0B4J279 112 aa11.21□□□□□ -0.61
VIM-204ENST00000478746 A0A0D9SG52 128 aa11.21□□□□□ -0.61
VIM-204ENST00000478746 DIRC3C9JPN6 131 aa11.21□□□□□ -0.61
VIM-204ENST00000478746 KCNRGQ8N5I3 272 aa11.21□□□□□ -0.61
VIM-204ENST00000478746 RMI2Q96E14 147 aa11.21□□□□□ -0.61
VIM-204ENST00000478746 WDR61Q9GZS3 305 aaKnown RBP11.21□□□□□ -0.61
VIM-204ENST00000478746 WFDC1Q9HC57 220 aa11.21□□□□□ -0.61
VIM-204ENST00000478746 SDF2L1Q9HCN8 221 aa11.21□□□□□ -0.61
VIM-204ENST00000478746 BORCS7-ASMTA0A0B4J1R7 106 aa11.2□□□□□ -0.62
VIM-204ENST00000478746 C17orf112F2Z3M2 114 aa11.2□□□□□ -0.62
VIM-204ENST00000478746 TAAR5O14804 337 aa11.2□□□□□ -0.62
VIM-204ENST00000478746 IGLV2-11P01706 119 aa11.2□□□□□ -0.62
VIM-204ENST00000478746 UBE2L3P68036 154 aaKnown RBP11.2□□□□□ -0.62
VIM-204ENST00000478746 TMED6Q8WW62 240 aa11.2□□□□□ -0.62
VIM-204ENST00000478746 DAZAP1Q96EP5 407 aaKnown RBP11.2□□□□□ -0.62
VIM-204ENST00000478746 KCNS1Q96KK3 526 aa11.2□□□□□ -0.62
VIM-204ENST00000478746 KANTRA0A1W2PQU2 76 aa11.19□□□□□ -0.62
VIM-204ENST00000478746 HNRNPA3P51991 378 aaKnown RBP11.19□□□□□ -0.62
VIM-204ENST00000478746 DPPA3Q6W0C5 159 aa11.19□□□□□ -0.62
VIM-204ENST00000478746 IGKV2D-24A0A075B6R9 120 aa11.18□□□□□ -0.62
VIM-204ENST00000478746 TRAV8-1A0A0A6YYK1 113 aa11.18□□□□□ -0.62
VIM-204ENST00000478746 MGST1P10620 155 aaKnown RBP11.18□□□□□ -0.62
VIM-204ENST00000478746 RPL7L1Q6DKI1 246 aaKnown RBP11.18□□□□□ -0.62
VIM-204ENST00000478746 TMUB2Q71RG4 321 aa11.18□□□□□ -0.62
VIM-204ENST00000478746 BCL2L11O43521 198 aa11.17□□□□□ -0.62
VIM-204ENST00000478746 MT1HL1P0DM35 61 aa11.17□□□□□ -0.62
VIM-204ENST00000478746 HSD17B11Q8NBQ5 300 aa11.17□□□□□ -0.62
VIM-204ENST00000478746 F6UZH7 168 aa11.16□□□□□ -0.62
VIM-204ENST00000478746 TAS2R45P59539 299 aa11.16□□□□□ -0.62
VIM-204ENST00000478746 LGALSLQ3ZCW2 172 aaPredicted RBP11.16□□□□□ -0.62
VIM-204ENST00000478746 KHDC3LQ587J8 217 aa11.16□□□□□ -0.62
VIM-204ENST00000478746 CMTM2Q8TAZ6 248 aa11.16□□□□□ -0.62
VIM-204ENST00000478746 TREM1Q9NP99 234 aa11.16□□□□□ -0.62
VIM-204ENST00000478746 OTORQ9NRC9 128 aa11.16□□□□□ -0.62
VIM-204ENST00000478746 RPH3ALQ9UNE2 315 aa11.16□□□□□ -0.62
VIM-204ENST00000478746 A0A087WWC5 75 aa11.15□□□□□ -0.62
VIM-204ENST00000478746 PGPA6NDG6 321 aa11.15□□□□□ -0.62
VIM-204ENST00000478746 GAGE12JA6NER3 117 aa11.15□□□□□ -0.62
VIM-204ENST00000478746 SEC11BP0C7V7 166 aa11.15□□□□□ -0.62
VIM-204ENST00000478746 GAGE1Q13065 139 aa11.15□□□□□ -0.62
VIM-204ENST00000478746 GAGE4Q13068 117 aa11.15□□□□□ -0.62
VIM-204ENST00000478746 GAGE5Q13069 117 aa11.15□□□□□ -0.62
VIM-204ENST00000478746 GAGE13Q4V321 117 aa11.15□□□□□ -0.62
VIM-204ENST00000478746 FFAR4Q5NUL3 377 aa11.15□□□□□ -0.62
VIM-204ENST00000478746 FAM74A1Q5RGS3 127 aa11.15□□□□□ -0.62
VIM-204ENST00000478746 GOLT1AQ6ZVE7 132 aa11.15□□□□□ -0.62
VIM-204ENST00000478746 TVP23CQ96ET8 276 aa11.15□□□□□ -0.62
VIM-204ENST00000478746 DNAJC30Q96LL9 226 aa11.15□□□□□ -0.62
VIM-204ENST00000478746 ZNF471Q9BX82 626 aaPredicted RBP11.15□□□□□ -0.62
VIM-204ENST00000478746 CYTL1Q9NRR1 136 aa11.15□□□□□ -0.62
VIM-204ENST00000478746 URGCP-MRPS24S4R325 110 aa11.15□□□□□ -0.62
VIM-204ENST00000478746 PGPEP1LA6NFU8 196 aa11.14□□□□□ -0.63
VIM-204ENST00000478746 ATP6V0CP27449 155 aa11.14□□□□□ -0.63
VIM-204ENST00000478746 NKX2-5P52952 324 aaPredicted RBP11.14□□□□□ -0.63
VIM-204ENST00000478746 EIF5AP63241 154 aaKnown RBP11.14□□□□□ -0.63
VIM-204ENST00000478746 C9orf62Q8N4C0 152 aa11.14□□□□□ -0.63
VIM-204ENST00000478746 CYB561D1Q8N8Q1 229 aa11.14□□□□□ -0.63
VIM-204ENST00000478746 ZNF506Q5JVG8 444 aa11.13□□□□□ -0.63
VIM-204ENST00000478746 ARL6IP6Q8N6S5 226 aa11.13□□□□□ -0.63
VIM-204ENST00000478746 PSMG3Q9BT73 122 aaPredicted RBP11.13□□□□□ -0.63
VIM-204ENST00000478746 KLK12Q9UKR0 248 aa11.13□□□□□ -0.63
VIM-204ENST00000478746 LRP2P98164 4655 aa11.12□□□□□ -0.63
VIM-204ENST00000478746 C14orf177Q52M58 125 aa11.12□□□□□ -0.63
VIM-204ENST00000478746 PTH2Q96A98 100 aa11.12□□□□□ -0.63
VIM-204ENST00000478746 LINC00694P0DN24 101 aa11.11□□□□□ -0.63
VIM-204ENST00000478746 TPT1P13693 172 aaKnown RBP11.11□□□□□ -0.63
VIM-204ENST00000478746 Q6ZRU5 148 aa11.11□□□□□ -0.63
VIM-204ENST00000478746 NIT1Q86X76 327 aa11.11□□□□□ -0.63
VIM-204ENST00000478746 OR2G3Q8NGZ4 309 aa11.11□□□□□ -0.63
VIM-204ENST00000478746 UBE2WQ96B02 151 aa11.11□□□□□ -0.63
VIM-204ENST00000478746 C9orf85Q96MD7 179 aa11.11□□□□□ -0.63
VIM-204ENST00000478746 EIF3GO75821 320 aaKnown RBP eCLIP11.1□□□□□ -0.63
VIM-204ENST00000478746 FGF8P55075 233 aaPredicted RBP11.1□□□□□ -0.63
VIM-204ENST00000478746 SERF2P84101 59 aa11.1□□□□□ -0.63
VIM-204ENST00000478746 ZFP2Q6ZN57 461 aa11.1□□□□□ -0.63
VIM-204ENST00000478746 C11orf21Q9P2W6 132 aa11.1□□□□□ -0.63
VIM-204ENST00000478746 Q9UF83 564 aa11.1□□□□□ -0.63
VIM-204ENST00000478746 MBP02144 154 aa11.09□□□□□ -0.63
VIM-204ENST00000478746 ELOBQ15370 118 aa11.09□□□□□ -0.63
VIM-204ENST00000478746 PQLC2Q6ZP29 291 aa11.09□□□□□ -0.63
VIM-204ENST00000478746 SLC51BQ86UW2 128 aa11.09□□□□□ -0.63
VIM-204ENST00000478746 STOML3Q8TAV4 291 aa11.09□□□□□ -0.63
VIM-204ENST00000478746 NDFIP1Q9BT67 221 aa11.09□□□□□ -0.63
VIM-204ENST00000478746 SAMD10Q9BYL1 202 aa11.09□□□□□ -0.63
VIM-204ENST00000478746 PARLQ9H300 379 aa11.09□□□□□ -0.63
VIM-204ENST00000478746 TNXBP22105 4242 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms