RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 GCHFRP30047 84 aa8.21□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 CFAP126Q5VTH2 177 aa8.21□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 SLC25A29Q8N8R3 303 aa8.21□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 C9orf85Q96MD7 179 aa8.21□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 MYCBP2O75592 4640 aa8.21□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 TRBV6-4A0A1B0GX49 114 aa8.2□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 UMAD1C9J7I0 102 aa8.2□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 K7EQM0 130 aa8.2□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 TCRAP04437 139 aa8.2□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 SEC11BP0C7V7 166 aa8.2□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 AKAP14Q86UN6 197 aa8.2□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 C5orf17Q8NAS9 161 aa8.2□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 STOML3Q8TAV4 291 aa8.2□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 SGK494Q96LW2 274 aa8.2□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 ZNF471Q9BX82 626 aaPredicted RBP8.2□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 NKX6-2Q9C056 277 aaPredicted RBP8.2□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 RPH3ALQ9UNE2 315 aa8.2□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 FBLL1A6NHQ2 334 aaKnown RBP8.19□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 C1QBP02746 253 aa8.19□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 PFN1P07737 140 aaKnown RBP8.19□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 RNASE3P12724 160 aaKnown RBP8.19□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 TPT1P13693 172 aaKnown RBP8.19□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 GCSHP23434 173 aa8.19□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 ZNF876PQ49A33 203 aa8.19□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 EIF5AL1Q6IS14 154 aaKnown RBP8.19□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 TMUB2Q71RG4 321 aa8.19□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 A0A1W2PRE2 83 aa8.18□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 PGPEP1LA6NFU8 196 aa8.18□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 INAFM2P0DMQ5 153 aa8.18□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 Q5VSD8 79 aa8.18□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 EPDR1Q9UM22 224 aa8.18□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 PSG8Q9UQ74 426 aa8.18□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 GGTLC3B5MD39 225 aa8.17□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 GCGP01275 180 aa8.17□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 LINC00694P0DN24 101 aa8.17□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 SUMO1P63165 101 aaKnown RBP8.17□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 RHOHQ15669 191 aa8.17□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 ZNF506Q5JVG8 444 aa8.17□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 PIK3CD-AS1Q5SR53 167 aa8.17□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 LELP1Q5T871 98 aa8.17□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 Q6ZSN1 163 aa8.17□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 TMEM75Q8N9X5 138 aa8.17□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 NHLRC2Q8NBF2 726 aa8.17□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 NTN5Q8WTR8 489 aaPredicted RBP8.17□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 DNAH8Q96JB1 4490 aa8.17□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 hCG_2014768A0A024R1R8 64 aa8.16□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 IGKV3D-20A0A0C4DH25 116 aa8.16□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 MAP1LC3B2A6NCE7 125 aa8.16□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 FLI1Q01543 452 aaPredicted RBP8.16□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 ZNF726P1Q15940 193 aa8.16□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 LGALSLQ3ZCW2 172 aaPredicted RBP8.16□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 UFSP1Q6NVU6 142 aa8.16□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 PRADC1Q9BSG0 188 aa8.16□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 NDFIP1Q9BT67 221 aa8.16□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 TMEM70Q9BUB7 260 aa8.16□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 MAP1LC3BQ9GZQ8 125 aa8.16□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 GTSF1LQ9H1H1 148 aa8.16□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 TRAV8-6A0A0B4J262 113 aa8.15□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 SMR3BP02814 79 aaPredicted RBP8.15□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 MGST1P10620 155 aaKnown RBP8.15□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 PPT1P50897 306 aa8.15□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 RAB5CP51148 216 aa8.15□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 LAGE3Q14657 143 aa8.15□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 SMUG1Q53HV7 270 aa8.15□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 ZFP2Q6ZN57 461 aa8.15□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 Q8N814 137 aa8.15□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 CYB561D1Q8N8Q1 229 aa8.15□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 FRZBQ92765 325 aa8.15□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 TCEAL7Q9BRU2 100 aa8.15□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 Q9UF83 564 aa8.15□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 ARL2-SNX15V9GYD0 113 aa8.15□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 IGHV3-73A0A0B4J1V6 119 aa8.14□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 TEX46H3BTG2 121 aa8.14□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 LCE2BO14633 110 aa8.14□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 IFNA7P01567 189 aa8.14□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 FGF8P55075 233 aaPredicted RBP8.14□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 SAPCD1Q5SSQ6 148 aa8.14□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 COX8CQ7Z4L0 72 aa8.14□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 SLC51BQ86UW2 128 aa8.14□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 ATP6V0E2Q8NHE4 81 aa8.14□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 FAM213BQ8TBF2 198 aa8.14□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 SFT2D1Q8WV19 159 aa8.14□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 MBD3L1Q8WWY6 194 aa8.14□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 LINC00479Q96M42 142 aa8.14□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 FAM30AQ9NZY2 134 aa8.14□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 IGLV5-52A0A0A0MRZ9 124 aa8.13□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 H2AFB1P0C5Y9 115 aa8.13□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 FHITP49789 147 aa8.13□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 ZFP69Q49AA0 526 aa8.13□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 OR10J3Q5JRS4 329 aa8.13□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 DNLZQ5SXM8 178 aa8.13□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 PRNTQ86SH4 94 aa8.13□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 Q8N3U1 123 aa8.13□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 HIST1H2BAQ96A08 127 aa8.13□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 PARLQ9H300 379 aa8.13□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 FAM74A7A6NL05 159 aa8.12□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 A8MWV9 139 aa8.12□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 PSCAO43653 123 aa8.12□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 IGHV3-30P01768 117 aa8.12□□□□□ -1.11
MSH5-SAPCD1-205ENST00000476085 IGHV3-33P01772 117 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms