RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 C16orf90A8MZG2 172 aa9.63□□□□□ -0.87
UPF3A-204ENST00000475218 C1orf196B1AJZ1 125 aa9.63□□□□□ -0.87
UPF3A-204ENST00000475218 NXPH4O95158 308 aa9.63□□□□□ -0.87
UPF3A-204ENST00000475218 MT-ND4LP03901 98 aa9.63□□□□□ -0.87
UPF3A-204ENST00000475218 TCRAP04437 139 aa9.63□□□□□ -0.87
UPF3A-204ENST00000475218 S100A9P06702 114 aaKnown RBP9.63□□□□□ -0.87
UPF3A-204ENST00000475218 LINC00315P59091 139 aa9.63□□□□□ -0.87
UPF3A-204ENST00000475218 KRTAP10-2P60368 255 aa9.63□□□□□ -0.87
UPF3A-204ENST00000475218 RPL7L1Q6DKI1 246 aaKnown RBP9.63□□□□□ -0.87
UPF3A-204ENST00000475218 CBLN2Q8IUK8 224 aa9.63□□□□□ -0.87
UPF3A-204ENST00000475218 SFT2D1Q8WV19 159 aa9.63□□□□□ -0.87
UPF3A-204ENST00000475218 TRAV21A0A0B4J279 112 aa9.62□□□□□ -0.87
UPF3A-204ENST00000475218 K7EQD1 137 aa9.62□□□□□ -0.87
UPF3A-204ENST00000475218 SERF2P84101 59 aa9.62□□□□□ -0.87
UPF3A-204ENST00000475218 COLCA2A8K830 154 aa9.61□□□□□ -0.87
UPF3A-204ENST00000475218 SIVA1O15304 175 aa9.61□□□□□ -0.87
UPF3A-204ENST00000475218 RPL35P42766 123 aaKnown RBP9.61□□□□□ -0.87
UPF3A-204ENST00000475218 SLAQ13239 276 aa9.61□□□□□ -0.87
UPF3A-204ENST00000475218 C5orf17Q8NAS9 161 aa9.61□□□□□ -0.87
UPF3A-204ENST00000475218 TNFRSF18Q9Y5U5 241 aa9.61□□□□□ -0.87
UPF3A-204ENST00000475218 TRAV4A0A0B4J268 109 aa9.6□□□□□ -0.87
UPF3A-204ENST00000475218 TRGV4A0A0C4DH28 118 aa9.6□□□□□ -0.87
UPF3A-204ENST00000475218 LOC100131303A0A0U1RQF7 123 aa9.6□□□□□ -0.87
UPF3A-204ENST00000475218 M0R2P5 195 aa9.6□□□□□ -0.87
UPF3A-204ENST00000475218 BTF3P20290 206 aaKnown RBP9.6□□□□□ -0.87
UPF3A-204ENST00000475218 RHEBQ15382 184 aa9.6□□□□□ -0.87
UPF3A-204ENST00000475218 MRPL23Q16540 153 aaKnown RBP9.6□□□□□ -0.87
UPF3A-204ENST00000475218 SPATA12Q7Z6I5 190 aa9.6□□□□□ -0.87
UPF3A-204ENST00000475218 TMEM75Q8N9X5 138 aa9.6□□□□□ -0.87
UPF3A-204ENST00000475218 SUMO1P63165 101 aaKnown RBP9.6□□□□□ -0.87
UPF3A-204ENST00000475218 SRSF3P84103 164 aaKnown RBP9.6□□□□□ -0.87
UPF3A-204ENST00000475218 DPPA3Q6W0C5 159 aa9.6□□□□□ -0.87
UPF3A-204ENST00000475218 EPDR1Q9UM22 224 aa9.6□□□□□ -0.87
UPF3A-204ENST00000475218 PSG8Q9UQ74 426 aa9.6□□□□□ -0.87
UPF3A-204ENST00000475218 PCP4L1A6NKN8 68 aa9.59□□□□□ -0.87
UPF3A-204ENST00000475218 CXorf1O96002 111 aa9.59□□□□□ -0.87
UPF3A-204ENST00000475218 MBP02144 154 aa9.59□□□□□ -0.87
UPF3A-204ENST00000475218 S100A6P06703 90 aa9.59□□□□□ -0.87
UPF3A-204ENST00000475218 GYPEP15421 78 aa9.59□□□□□ -0.87
UPF3A-204ENST00000475218 NEGR1Q7Z3B1 354 aa9.59□□□□□ -0.87
UPF3A-204ENST00000475218 LINC00479Q96M42 142 aa9.59□□□□□ -0.87
UPF3A-204ENST00000475218 SERTM2A0A1B0GWG4 89 aa9.58□□□□□ -0.88
UPF3A-204ENST00000475218 WFDC10BQ8IUB3 73 aa9.58□□□□□ -0.88
UPF3A-204ENST00000475218 ACTR3CQ9C0K3 210 aaPredicted RBP9.58□□□□□ -0.88
UPF3A-204ENST00000475218 SDF2L1Q9HCN8 221 aa9.58□□□□□ -0.88
UPF3A-204ENST00000475218 C5orf52A6NGY3 159 aa9.58□□□□□ -0.88
UPF3A-204ENST00000475218 CDK2AP2O75956 126 aa9.58□□□□□ -0.88
UPF3A-204ENST00000475218 GCGP01275 180 aa9.58□□□□□ -0.88
UPF3A-204ENST00000475218 OR4C5Q8NGB2 326 aa9.58□□□□□ -0.88
UPF3A-204ENST00000475218 C9orf85Q96MD7 179 aa9.58□□□□□ -0.88
UPF3A-204ENST00000475218 TMEM167BQ9NRX6 74 aa9.58□□□□□ -0.88
UPF3A-204ENST00000475218 UMAD1C9J7I0 102 aa9.57□□□□□ -0.88
UPF3A-204ENST00000475218 RNASE3P12724 160 aaKnown RBP9.57□□□□□ -0.88
UPF3A-204ENST00000475218 GATA1P15976 413 aaPredicted RBP9.57□□□□□ -0.88
UPF3A-204ENST00000475218 PRNTQ86SH4 94 aa9.57□□□□□ -0.88
UPF3A-204ENST00000475218 CYB561D1Q8N8Q1 229 aa9.57□□□□□ -0.88
UPF3A-204ENST00000475218 HIST1H2BAQ96A08 127 aa9.57□□□□□ -0.88
UPF3A-204ENST00000475218 KCNS1Q96KK3 526 aa9.57□□□□□ -0.88
UPF3A-204ENST00000475218 TRAV34A0A0B4J273 112 aa9.56□□□□□ -0.88
UPF3A-204ENST00000475218 A0A1W2PRE2 83 aa9.56□□□□□ -0.88
UPF3A-204ENST00000475218 PFN1P07737 140 aaKnown RBP9.56□□□□□ -0.88
UPF3A-204ENST00000475218 SRIP30626 198 aa9.56□□□□□ -0.88
UPF3A-204ENST00000475218 SVIPQ8NHG7 77 aa9.56□□□□□ -0.88
UPF3A-204ENST00000475218 PGPEP1LA6NFU8 196 aa9.55□□□□□ -0.88
UPF3A-204ENST00000475218 ORM1P02763 201 aa9.55□□□□□ -0.88
UPF3A-204ENST00000475218 FUSP35637 526 aaKnown RBP eCLIP9.55□□□□□ -0.88
UPF3A-204ENST00000475218 FGF8P55075 233 aaPredicted RBP9.55□□□□□ -0.88
UPF3A-204ENST00000475218 CFAP126Q5VTH2 177 aa9.55□□□□□ -0.88
UPF3A-204ENST00000475218 NDFIP1Q9BT67 221 aa9.55□□□□□ -0.88
UPF3A-204ENST00000475218 IGKV3D-20A0A0C4DH25 116 aa9.55□□□□□ -0.88
UPF3A-204ENST00000475218 CTXND1A0A1B0GTU2 59 aa9.55□□□□□ -0.88
UPF3A-204ENST00000475218 C9JCJ5 164 aa9.55□□□□□ -0.88
UPF3A-204ENST00000475218 RS1O15537 224 aa9.55□□□□□ -0.88
UPF3A-204ENST00000475218 DNAH10OSP0CZ25 163 aa9.55□□□□□ -0.88
UPF3A-204ENST00000475218 S100PP25815 95 aa9.55□□□□□ -0.88
UPF3A-204ENST00000475218 UBE2G2P60604 165 aa9.55□□□□□ -0.88
UPF3A-204ENST00000475218 ZNF876PQ49A33 203 aa9.55□□□□□ -0.88
UPF3A-204ENST00000475218 SLC25A29Q8N8R3 303 aa9.55□□□□□ -0.88
UPF3A-204ENST00000475218 RPS10P5Q9NQ39 176 aa9.55□□□□□ -0.88
UPF3A-204ENST00000475218 C7orf77A4D0Y5 90 aa9.54□□□□□ -0.88
UPF3A-204ENST00000475218 ZNF506Q5JVG8 444 aa9.54□□□□□ -0.88
UPF3A-204ENST00000475218 ARL2-SNX15V9GYD0 113 aa9.54□□□□□ -0.88
UPF3A-204ENST00000475218 K7EQM0 130 aa9.53□□□□□ -0.88
UPF3A-204ENST00000475218 RAB5AP20339 215 aa9.53□□□□□ -0.88
UPF3A-204ENST00000475218 CRIP1P50238 77 aa9.53□□□□□ -0.88
UPF3A-204ENST00000475218 PPT1P50897 306 aa9.53□□□□□ -0.88
UPF3A-204ENST00000475218 PTH2Q96A98 100 aa9.53□□□□□ -0.88
UPF3A-204ENST00000475218 LY96Q9Y6Y9 160 aa9.53□□□□□ -0.88
UPF3A-204ENST00000475218 PEX7O00628 323 aa9.52□□□□□ -0.88
UPF3A-204ENST00000475218 SNRPEP62304 92 aaKnown RBP9.52□□□□□ -0.88
UPF3A-204ENST00000475218 Q6ZSN1 163 aa9.52□□□□□ -0.88
UPF3A-204ENST00000475218 Q86TA4 180 aa9.52□□□□□ -0.88
UPF3A-204ENST00000475218 TXNDC17Q9BRA2 123 aa9.52□□□□□ -0.88
UPF3A-204ENST00000475218 EIF5A2Q9GZV4 153 aaKnown RBP9.52□□□□□ -0.88
UPF3A-204ENST00000475218 A0A087WWC5 75 aa9.52□□□□□ -0.89
UPF3A-204ENST00000475218 IGHV3-73A0A0B4J1V6 119 aa9.52□□□□□ -0.89
UPF3A-204ENST00000475218 FBLL1A6NHQ2 334 aaKnown RBP9.52□□□□□ -0.89
UPF3A-204ENST00000475218 C9JQL5 133 aa9.52□□□□□ -0.89
UPF3A-204ENST00000475218 FHITP49789 147 aa9.52□□□□□ -0.89
UPF3A-204ENST00000475218 TIRAPP58753 221 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms