RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 LINC00588Q9Y4M8 146 aa9.06□□□□□ -0.96
COL28A1-206ENST00000465339 M0R2N4 97 aa9.05□□□□□ -0.96
COL28A1-206ENST00000465339 CIDEAO60543 219 aa9.05□□□□□ -0.96
COL28A1-206ENST00000465339 CCL20P78556 96 aa9.05□□□□□ -0.96
COL28A1-206ENST00000465339 ZNF876PQ49A33 203 aa9.05□□□□□ -0.96
COL28A1-206ENST00000465339 CT83Q5H943 113 aa9.05□□□□□ -0.96
COL28A1-206ENST00000465339 FAM162BQ5T6X4 162 aa9.05□□□□□ -0.96
COL28A1-206ENST00000465339 ZC2HC1AQ96GY0 325 aa9.05□□□□□ -0.96
COL28A1-206ENST00000465339 ZNF479Q96JC4 524 aa9.05□□□□□ -0.96
COL28A1-206ENST00000465339 C9orf85Q96MD7 179 aa9.05□□□□□ -0.96
COL28A1-206ENST00000465339 TXNDC17Q9BRA2 123 aa9.05□□□□□ -0.96
COL28A1-206ENST00000465339 GNG13Q9P2W3 67 aa9.05□□□□□ -0.96
COL28A1-206ENST00000465339 DNAH6Q9C0G6 4158 aa9.05□□□□□ -0.96
COL28A1-206ENST00000465339 IGLV2-18A0A075B6J9 118 aa9.04□□□□□ -0.96
COL28A1-206ENST00000465339 A0A096LPF7 62 aa9.04□□□□□ -0.96
COL28A1-206ENST00000465339 IGKV3D-20A0A0C4DH25 116 aa9.04□□□□□ -0.96
COL28A1-206ENST00000465339 H3BS24 57 aa9.04□□□□□ -0.96
COL28A1-206ENST00000465339 ORM1P02763 201 aa9.04□□□□□ -0.96
COL28A1-206ENST00000465339 SFTA3P0C7M3 94 aa9.04□□□□□ -0.96
COL28A1-206ENST00000465339 CRIP1P50238 77 aa9.04□□□□□ -0.96
COL28A1-206ENST00000465339 MRPL23Q16540 153 aaKnown RBP9.04□□□□□ -0.96
COL28A1-206ENST00000465339 ESRGQ1W209 222 aa9.04□□□□□ -0.96
COL28A1-206ENST00000465339 ZNF674Q2M3X9 581 aa9.04□□□□□ -0.96
COL28A1-206ENST00000465339 Q6ZR54 194 aa9.04□□□□□ -0.96
COL28A1-206ENST00000465339 ZNRF2Q8NHG8 242 aa9.04□□□□□ -0.96
COL28A1-206ENST00000465339 ICOSQ9Y6W8 199 aa9.04□□□□□ -0.96
COL28A1-206ENST00000465339 B4DEV8 164 aa9.03□□□□□ -0.96
COL28A1-206ENST00000465339 KRBOX1C9JBD0 128 aa9.03□□□□□ -0.96
COL28A1-206ENST00000465339 C9JCJ5 164 aa9.03□□□□□ -0.96
COL28A1-206ENST00000465339 SH2D1AO60880 128 aa9.03□□□□□ -0.96
COL28A1-206ENST00000465339 RNASE3P12724 160 aaKnown RBP9.03□□□□□ -0.96
COL28A1-206ENST00000465339 S100A4P26447 101 aaKnown RBP9.03□□□□□ -0.96
COL28A1-206ENST00000465339 ASIPP42127 132 aa9.03□□□□□ -0.96
COL28A1-206ENST00000465339 PIK3CD-AS1Q5SR53 167 aa9.03□□□□□ -0.96
COL28A1-206ENST00000465339 DNLZQ5SXM8 178 aa9.03□□□□□ -0.96
COL28A1-206ENST00000465339 A0A1B0GVG6 124 aa9.02□□□□□ -0.97
COL28A1-206ENST00000465339 IFNA1P01562 189 aa9.02□□□□□ -0.97
COL28A1-206ENST00000465339 LINC00336Q6ZUF6 198 aa9.02□□□□□ -0.97
COL28A1-206ENST00000465339 BAGE2Q86Y30 109 aa9.02□□□□□ -0.97
COL28A1-206ENST00000465339 UPK3BQ9BT76 320 aa9.02□□□□□ -0.97
COL28A1-206ENST00000465339 Q9H8V8 135 aa9.02□□□□□ -0.97
COL28A1-206ENST00000465339 IL36BQ9NZH7 164 aa9.02□□□□□ -0.97
COL28A1-206ENST00000465339 MRPS16Q9Y3D3 137 aaKnown RBP9.02□□□□□ -0.97
COL28A1-206ENST00000465339 PGPEP1LA6NFU8 196 aa9.01□□□□□ -0.97
COL28A1-206ENST00000465339 RS1O15537 224 aa9.01□□□□□ -0.97
COL28A1-206ENST00000465339 TAGLN2P37802 199 aaKnown RBP9.01□□□□□ -0.97
COL28A1-206ENST00000465339 ZNF506Q5JVG8 444 aa9.01□□□□□ -0.97
COL28A1-206ENST00000465339 CFAP126Q5VTH2 177 aa9.01□□□□□ -0.97
COL28A1-206ENST00000465339 NEGR1Q7Z3B1 354 aa9.01□□□□□ -0.97
COL28A1-206ENST00000465339 PCNPQ8WW12 178 aaKnown RBP9.01□□□□□ -0.97
COL28A1-206ENST00000465339 C11orf52Q96A22 123 aa9.01□□□□□ -0.97
COL28A1-206ENST00000465339 MLST8Q9BVC4 326 aa9.01□□□□□ -0.97
COL28A1-206ENST00000465339 NBDYA0A0U1RRE5 68 aa9□□□□□ -0.97
COL28A1-206ENST00000465339 A8MWV9 139 aa9□□□□□ -0.97
COL28A1-206ENST00000465339 M0R036 132 aa9□□□□□ -0.97
COL28A1-206ENST00000465339 PDE6DO43924 150 aa9□□□□□ -0.97
COL28A1-206ENST00000465339 RPL35P42766 123 aaKnown RBP9□□□□□ -0.97
COL28A1-206ENST00000465339 BLOC1S1P78537 153 aa9□□□□□ -0.97
COL28A1-206ENST00000465339 MEF2BQ02080 365 aaPredicted RBP9□□□□□ -0.97
COL28A1-206ENST00000465339 SOHLH1Q5JUK2 328 aa9□□□□□ -0.97
COL28A1-206ENST00000465339 NHLRC2Q8NBF2 726 aa9□□□□□ -0.97
COL28A1-206ENST00000465339 K7EQD1 137 aa8.99□□□□□ -0.97
COL28A1-206ENST00000465339 ARMS2P0C7Q2 107 aa8.99□□□□□ -0.97
COL28A1-206ENST00000465339 GYPEP15421 78 aa8.99□□□□□ -0.97
COL28A1-206ENST00000465339 GATA1P15976 413 aaPredicted RBP8.99□□□□□ -0.97
COL28A1-206ENST00000465339 SRIP30626 198 aa8.99□□□□□ -0.97
COL28A1-206ENST00000465339 C1orf134Q5TEV5 83 aa8.99□□□□□ -0.97
COL28A1-206ENST00000465339 LYPD5Q6UWN5 251 aa8.99□□□□□ -0.97
COL28A1-206ENST00000465339 SH2D6Q7Z4S9 175 aa8.99□□□□□ -0.97
COL28A1-206ENST00000465339 SYT8Q8NBV8 401 aa8.99□□□□□ -0.97
COL28A1-206ENST00000465339 VAX2Q9UIW0 290 aa8.99□□□□□ -0.97
COL28A1-206ENST00000465339 TRBV6-4A0A1B0GX49 114 aa8.98□□□□□ -0.97
COL28A1-206ENST00000465339 GRIFINA4D1Z8 144 aa8.98□□□□□ -0.97
COL28A1-206ENST00000465339 H3BVH4 76 aa8.98□□□□□ -0.97
COL28A1-206ENST00000465339 BCL2P10415 239 aa8.98□□□□□ -0.97
COL28A1-206ENST00000465339 TTC32Q5I0X7 151 aa8.98□□□□□ -0.97
COL28A1-206ENST00000465339 ALKAL2Q6UX46 152 aa8.98□□□□□ -0.97
COL28A1-206ENST00000465339 ZFP2Q6ZN57 461 aa8.98□□□□□ -0.97
COL28A1-206ENST00000465339 ZNF575Q86XF7 245 aa8.98□□□□□ -0.97
COL28A1-206ENST00000465339 A0A1W2PPQ1 181 aa8.97□□□□□ -0.97
COL28A1-206ENST00000465339 RTL8CO15255 209 aa8.97□□□□□ -0.97
COL28A1-206ENST00000465339 CXCL1P09341 107 aa8.97□□□□□ -0.97
COL28A1-206ENST00000465339 MGST1P10620 155 aaKnown RBP8.97□□□□□ -0.97
COL28A1-206ENST00000465339 SLC25A29Q8N8R3 303 aa8.97□□□□□ -0.97
COL28A1-206ENST00000465339 SMIM12Q96EX1 92 aa8.97□□□□□ -0.97
COL28A1-206ENST00000465339 PRADC1Q9BSG0 188 aa8.97□□□□□ -0.97
COL28A1-206ENST00000465339 DERL1Q9BUN8 251 aa8.97□□□□□ -0.97
COL28A1-206ENST00000465339 SCRT2Q9NQ03 307 aa8.97□□□□□ -0.97
COL28A1-206ENST00000465339 MED9Q9NWA0 146 aa8.97□□□□□ -0.97
COL28A1-206ENST00000465339 PHLDA3Q9Y5J5 127 aa8.97□□□□□ -0.97
COL28A1-206ENST00000465339 DNAH10Q8IVF4 4471 aa8.97□□□□□ -0.97
COL28A1-206ENST00000465339 TMSB15BA0A087X1C1 80 aa8.96□□□□□ -0.98
COL28A1-206ENST00000465339 SIVA1O15304 175 aa8.96□□□□□ -0.98
COL28A1-206ENST00000465339 MED14OSP0DP75 135 aa8.96□□□□□ -0.98
COL28A1-206ENST00000465339 NKX2-5P52952 324 aaPredicted RBP8.96□□□□□ -0.98
COL28A1-206ENST00000465339 RHOHQ15669 191 aa8.96□□□□□ -0.98
COL28A1-206ENST00000465339 PRR27Q6MZM9 219 aa8.96□□□□□ -0.98
COL28A1-206ENST00000465339 PARLQ9H300 379 aa8.96□□□□□ -0.98
COL28A1-206ENST00000465339 IGHV3-73A0A0B4J1V6 119 aa8.95□□□□□ -0.98
COL28A1-206ENST00000465339 PRSS29PA6NIE9 313 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms