RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 LYZL2Q7Z4W2 148 aa1.28□□□□□ -2.2
USP40-211ENST00000464956 CROCCP2Q86T23 111 aa1.28□□□□□ -2.2
USP40-211ENST00000464956 KRTAP8-1Q8IUC2 63 aa1.28□□□□□ -2.2
USP40-211ENST00000464956 NUP35Q8NFH5 326 aa1.28□□□□□ -2.2
USP40-211ENST00000464956 NUDCD2Q8WVJ2 157 aa1.28□□□□□ -2.2
USP40-211ENST00000464956 CYGBQ8WWM9 190 aa1.28□□□□□ -2.2
USP40-211ENST00000464956 ASB13Q8WXK3 278 aa1.28□□□□□ -2.2
USP40-211ENST00000464956 PGLYRP4Q96LB8 373 aa1.28□□□□□ -2.2
USP40-211ENST00000464956 IMMP2LQ96T52 175 aa1.28□□□□□ -2.2
USP40-211ENST00000464956 CTNNBIP1Q9NSA3 81 aaPredicted RBP1.28□□□□□ -2.2
USP40-211ENST00000464956 FKBP14Q9NWM8 211 aa1.28□□□□□ -2.2
USP40-211ENST00000464956 ELF5Q9UKW6 265 aaPredicted RBP1.28□□□□□ -2.2
USP40-211ENST00000464956 FLVCR2Q9UPI3 526 aa1.28□□□□□ -2.2
USP40-211ENST00000464956 PSG8Q9UQ74 426 aa1.28□□□□□ -2.2
USP40-211ENST00000464956 IGLV4-60A0A075B6I1 120 aa1.27□□□□□ -2.21
USP40-211ENST00000464956 TRAV21A0A0B4J279 112 aa1.27□□□□□ -2.21
USP40-211ENST00000464956 IGHV1-24A0A0C4DH33 117 aa1.27□□□□□ -2.21
USP40-211ENST00000464956 TMEM272A0A1B0GTI8 110 aa1.27□□□□□ -2.21
USP40-211ENST00000464956 FAM236DA0A1B0GTK5 79 aa1.27□□□□□ -2.21
USP40-211ENST00000464956 CASQ2O14958 399 aaPredicted RBP1.27□□□□□ -2.21
USP40-211ENST00000464956 SSX5O60225 188 aa1.27□□□□□ -2.21
USP40-211ENST00000464956 COX7A2P2O60397 106 aa1.27□□□□□ -2.21
USP40-211ENST00000464956 NOL3O60936 208 aaKnown RBP1.27□□□□□ -2.21
USP40-211ENST00000464956 GHRHP01286 108 aa1.27□□□□□ -2.21
USP40-211ENST00000464956 IGLV6-57P01721 117 aa1.27□□□□□ -2.21
USP40-211ENST00000464956 CD1AP06126 327 aa1.27□□□□□ -2.21
USP40-211ENST00000464956 LIMS3P0CW19 117 aa1.27□□□□□ -2.21
USP40-211ENST00000464956 LIMS4P0CW20 117 aa1.27□□□□□ -2.21
USP40-211ENST00000464956 IGLC2P0DOY2 106 aa1.27□□□□□ -2.21
USP40-211ENST00000464956 FAM236CP0DP71 79 aa1.27□□□□□ -2.21
USP40-211ENST00000464956 ESDP10768 282 aa1.27□□□□□ -2.21
USP40-211ENST00000464956 MYL12AP19105 171 aa1.27□□□□□ -2.21
USP40-211ENST00000464956 PLP1P60201 277 aa1.27□□□□□ -2.21
USP40-211ENST00000464956 RAB11AP62491 216 aa1.27□□□□□ -2.21
USP40-211ENST00000464956 AKR1C1Q04828 323 aa1.27□□□□□ -2.21
USP40-211ENST00000464956 AARDQ4LEZ3 155 aa1.27□□□□□ -2.21
USP40-211ENST00000464956 LBHQ53QV2 105 aaPredicted RBP1.27□□□□□ -2.21
USP40-211ENST00000464956 CYP2G1PQ6ZSU1 146 aa1.27□□□□□ -2.21
USP40-211ENST00000464956 MITD1Q8WV92 249 aa1.27□□□□□ -2.21
USP40-211ENST00000464956 C2orf48Q96LS8 159 aa1.27□□□□□ -2.21
USP40-211ENST00000464956 SDHCQ99643 169 aaPredicted RBP1.27□□□□□ -2.21
USP40-211ENST00000464956 DERL1Q9BUN8 251 aa1.27□□□□□ -2.21
USP40-211ENST00000464956 ATG5Q9H1Y0 275 aa1.27□□□□□ -2.21
USP40-211ENST00000464956 NAA60Q9H7X0 242 aa1.27□□□□□ -2.21
USP40-211ENST00000464956 H3BQ15 152 aa1.26□□□□□ -2.21
USP40-211ENST00000464956 L7N2F9 121 aa1.26□□□□□ -2.21
USP40-211ENST00000464956 WRBO00258 174 aa1.26□□□□□ -2.21
USP40-211ENST00000464956 UBE2L6O14933 153 aa1.26□□□□□ -2.21
USP40-211ENST00000464956 NDUFB4O95168 129 aa1.26□□□□□ -2.21
USP40-211ENST00000464956 RAB6AP20340 208 aa1.26□□□□□ -2.21
USP40-211ENST00000464956 CAV2P51636 162 aa1.26□□□□□ -2.21
USP40-211ENST00000464956 MAGOHP61326 146 aaKnown RBP1.26□□□□□ -2.21
USP40-211ENST00000464956 SELENOTP62341 195 aa1.26□□□□□ -2.21
USP40-211ENST00000464956 VAMP2P63027 116 aa1.26□□□□□ -2.21
USP40-211ENST00000464956 IQCJQ1A5X6 159 aa1.26□□□□□ -2.21
USP40-211ENST00000464956 GAGE2EQ4V326 116 aa1.26□□□□□ -2.21
USP40-211ENST00000464956 PXDC1Q5TGL8 231 aa1.26□□□□□ -2.21
USP40-211ENST00000464956 UFSP1Q6NVU6 142 aa1.26□□□□□ -2.21
USP40-211ENST00000464956 NTM-AS1Q6ZSK4 140 aa1.26□□□□□ -2.21
USP40-211ENST00000464956 LINC00305Q7Z4B0 112 aa1.26□□□□□ -2.21
USP40-211ENST00000464956 HOGA1Q86XE5 327 aa1.26□□□□□ -2.21
USP40-211ENST00000464956 OR5AP2Q8NGF4 316 aa1.26□□□□□ -2.21
USP40-211ENST00000464956 OR5A1Q8NGJ0 315 aa1.26□□□□□ -2.21
USP40-211ENST00000464956 OR10G8Q8NGN5 311 aa1.26□□□□□ -2.21
USP40-211ENST00000464956 ARL6Q9H0F7 186 aa1.26□□□□□ -2.21
USP40-211ENST00000464956 ARV1Q9H2C2 271 aa1.26□□□□□ -2.21
USP40-211ENST00000464956 GAGE2DQ9UEU5 116 aa1.26□□□□□ -2.21
USP40-211ENST00000464956 PAIP2BQ9ULR5 123 aaKnown RBP1.26□□□□□ -2.21
USP40-211ENST00000464956 TIMM9Q9Y5J7 89 aa1.26□□□□□ -2.21
USP40-211ENST00000464956 LENEPQ9Y5L5 61 aa1.26□□□□□ -2.21
USP40-211ENST00000464956 TRBV19A0A075B6N1 114 aa1.25□□□□□ -2.21
USP40-211ENST00000464956 A0A0B4J2A0 478 aa1.25□□□□□ -2.21
USP40-211ENST00000464956 TRBV6-1A0A0K0K1D8 114 aa1.25□□□□□ -2.21
USP40-211ENST00000464956 GYG2O15488 501 aa1.25□□□□□ -2.21
USP40-211ENST00000464956 BCL2L11O43521 198 aa1.25□□□□□ -2.21
USP40-211ENST00000464956 SCGNO76038 276 aa1.25□□□□□ -2.21
USP40-211ENST00000464956 CST7O76096 145 aa1.25□□□□□ -2.21
USP40-211ENST00000464956 CDS2O95674 445 aa1.25□□□□□ -2.21
USP40-211ENST00000464956 MBPP02686 304 aaPredicted RBP1.25□□□□□ -2.21
USP40-211ENST00000464956 TBPP20226 339 aa1.25□□□□□ -2.21
USP40-211ENST00000464956 MALP21145 153 aa1.25□□□□□ -2.21
USP40-211ENST00000464956 S100A4P26447 101 aaKnown RBP1.25□□□□□ -2.21
USP40-211ENST00000464956 PRSS3P35030 304 aa1.25□□□□□ -2.21
USP40-211ENST00000464956 TGFBR1P36897 503 aa1.25□□□□□ -2.21
USP40-211ENST00000464956 POLR2IP36954 125 aaKnown RBP1.25□□□□□ -2.21
USP40-211ENST00000464956 XCL1P47992 114 aa1.25□□□□□ -2.21
USP40-211ENST00000464956 GABARAPL2P60520 117 aa1.25□□□□□ -2.21
USP40-211ENST00000464956 PDE6HQ13956 83 aa1.25□□□□□ -2.21
USP40-211ENST00000464956 KRTAP7-1Q8IUC3 87 aa1.25□□□□□ -2.21
USP40-211ENST00000464956 EXOC3-AS1Q8N2X6 119 aa1.25□□□□□ -2.21
USP40-211ENST00000464956 OR10D4PQ8NGN7 298 aa1.25□□□□□ -2.21
USP40-211ENST00000464956 CANT1Q8WVQ1 401 aa1.25□□□□□ -2.21
USP40-211ENST00000464956 DIRAS2Q96HU8 199 aa1.25□□□□□ -2.21
USP40-211ENST00000464956 BTF3L4Q96K17 158 aa1.25□□□□□ -2.21
USP40-211ENST00000464956 TMEM243Q9BU79 118 aa1.25□□□□□ -2.21
USP40-211ENST00000464956 GABARAPL3Q9BY60 117 aa1.25□□□□□ -2.21
USP40-211ENST00000464956 MED28Q9H204 178 aa1.25□□□□□ -2.21
USP40-211ENST00000464956 GPN1Q9HCN4 374 aaPredicted RBP1.25□□□□□ -2.21
USP40-211ENST00000464956 RABL2AQ9UBK7 228 aaPredicted RBP1.25□□□□□ -2.21
USP40-211ENST00000464956 RABL2BQ9UNT1 228 aa1.25□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms