RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 PSG8Q9UQ74 426 aa14.95□□□□□ -0.02
USP4-208ENST00000464168 LECT2O14960 151 aa14.94□□□□□ -0.02
USP4-208ENST00000464168 SSNA1O43805 119 aa14.94□□□□□ -0.02
USP4-208ENST00000464168 IGLV2-11P01706 119 aa14.94□□□□□ -0.02
USP4-208ENST00000464168 LINC00528Q8N1L1 170 aa14.94□□□□□ -0.02
USP4-208ENST00000464168 C5orf17Q8NAS9 161 aa14.94□□□□□ -0.02
USP4-208ENST00000464168 KRTAP29-1A8MX34 341 aaPredicted RBP14.93□□□□□ -0.02
USP4-208ENST00000464168 LINC00694P0DN24 101 aa14.93□□□□□ -0.02
USP4-208ENST00000464168 DAZ4Q86SG3 579 aaKnown RBP14.93□□□□□ -0.02
USP4-208ENST00000464168 SUN5Q8TC36 379 aa14.93□□□□□ -0.02
USP4-208ENST00000464168 DAZ3Q9NR90 486 aaKnown RBP14.93□□□□□ -0.02
USP4-208ENST00000464168 TRAV8-3A0A0A6YYJ7 113 aa14.92□□□□□ -0.02
USP4-208ENST00000464168 STAG3L2P0CL84 134 aa14.92□□□□□ -0.02
USP4-208ENST00000464168 STAG3L3P0CL85 134 aa14.92□□□□□ -0.02
USP4-208ENST00000464168 SMUG1Q53HV7 270 aa14.92□□□□□ -0.02
USP4-208ENST00000464168 Q9UF83 564 aa14.92□□□□□ -0.02
USP4-208ENST00000464168 GAGE12JA6NER3 117 aa14.91□□□□□ -0.02
USP4-208ENST00000464168 K7EQM0 130 aa14.91□□□□□ -0.02
USP4-208ENST00000464168 CDC34P49427 236 aaPredicted RBP14.91□□□□□ -0.02
USP4-208ENST00000464168 GAGE1Q13065 139 aa14.91□□□□□ -0.02
USP4-208ENST00000464168 GAGE4Q13068 117 aa14.91□□□□□ -0.02
USP4-208ENST00000464168 GAGE5Q13069 117 aa14.91□□□□□ -0.02
USP4-208ENST00000464168 GAGE13Q4V321 117 aa14.91□□□□□ -0.02
USP4-208ENST00000464168 ZFP2Q6ZN57 461 aa14.91□□□□□ -0.02
USP4-208ENST00000464168 PARLQ9H300 379 aa14.91□□□□□ -0.02
USP4-208ENST00000464168 LRP1Q07954 4544 aaKnown RBP14.91□□□□□ -0.02
USP4-208ENST00000464168 IGLV2-33A0A075B6J2 118 aaPredicted RBP14.9□□□□□ -0.02
USP4-208ENST00000464168 GCHFRP30047 84 aa14.9□□□□□ -0.02
USP4-208ENST00000464168 FLI1Q01543 452 aaPredicted RBP14.9□□□□□ -0.02
USP4-208ENST00000464168 PRNTQ86SH4 94 aa14.9□□□□□ -0.02
USP4-208ENST00000464168 DEFB104AQ8WTQ1 72 aa14.9□□□□□ -0.02
USP4-208ENST00000464168 RAB24Q969Q5 203 aa14.9□□□□□ -0.02
USP4-208ENST00000464168 SH3BGRL3Q9H299 93 aa14.9□□□□□ -0.02
USP4-208ENST00000464168 EPDR1Q9UM22 224 aa14.9□□□□□ -0.02
USP4-208ENST00000464168 GGTLC3B5MD39 225 aa14.89□□□□□ -0.03
USP4-208ENST00000464168 SUMO1P63165 101 aaKnown RBP14.89□□□□□ -0.03
USP4-208ENST00000464168 ZFP69Q49AA0 526 aa14.89□□□□□ -0.03
USP4-208ENST00000464168 LINC01620Q4KN68 170 aa14.89□□□□□ -0.03
USP4-208ENST00000464168 BAALCQ8WXS3 180 aa14.89□□□□□ -0.03
USP4-208ENST00000464168 IGKV3D-20A0A0C4DH25 116 aa14.88□□□□□ -0.03
USP4-208ENST00000464168 A8MWV9 139 aa14.88□□□□□ -0.03
USP4-208ENST00000464168 TOR2AQ5JU69 321 aa14.88□□□□□ -0.03
USP4-208ENST00000464168 PIK3CD-AS1Q5SR53 167 aa14.88□□□□□ -0.03
USP4-208ENST00000464168 OR2T35Q8NGX2 323 aa14.88□□□□□ -0.03
USP4-208ENST00000464168 OR2G3Q8NGZ4 309 aa14.88□□□□□ -0.03
USP4-208ENST00000464168 LINC00479Q96M42 142 aa14.88□□□□□ -0.03
USP4-208ENST00000464168 LGALSLQ3ZCW2 172 aaPredicted RBP14.87□□□□□ -0.03
USP4-208ENST00000464168 SAPCD1Q5SSQ6 148 aa14.87□□□□□ -0.03
USP4-208ENST00000464168 UFSP1Q6NVU6 142 aa14.87□□□□□ -0.03
USP4-208ENST00000464168 CYB561D1Q8N8Q1 229 aa14.87□□□□□ -0.03
USP4-208ENST00000464168 SAMD10Q9BYL1 202 aa14.87□□□□□ -0.03
USP4-208ENST00000464168 JPT2Q9H910 190 aa14.87□□□□□ -0.03
USP4-208ENST00000464168 A0A087WWC5 75 aa14.86□□□□□ -0.03
USP4-208ENST00000464168 SCXQ7RTU7 201 aa14.86□□□□□ -0.03
USP4-208ENST00000464168 C14orf178Q8N769 122 aaPredicted RBP14.86□□□□□ -0.03
USP4-208ENST00000464168 HSD17B11Q8NBQ5 300 aa14.86□□□□□ -0.03
USP4-208ENST00000464168 COX11Q9Y6N1 276 aa14.86□□□□□ -0.03
USP4-208ENST00000464168 S100A4P26447 101 aaKnown RBP14.85□□□□□ -0.03
USP4-208ENST00000464168 DNAJC30Q96LL9 226 aa14.85□□□□□ -0.03
USP4-208ENST00000464168 FGF8P55075 233 aaPredicted RBP14.84□□□□□ -0.03
USP4-208ENST00000464168 PSMG3Q9BT73 122 aaPredicted RBP14.84□□□□□ -0.03
USP4-208ENST00000464168 TMEM167BQ9NRX6 74 aa14.84□□□□□ -0.03
USP4-208ENST00000464168 HMCN2Q8NDA2 5059 aa14.84□□□□□ -0.03
USP4-208ENST00000464168 TRAV34A0A0B4J273 112 aa14.83□□□□□ -0.04
USP4-208ENST00000464168 RNF222A6NCQ9 220 aa14.83□□□□□ -0.04
USP4-208ENST00000464168 ASIPP42127 132 aa14.83□□□□□ -0.04
USP4-208ENST00000464168 KRTAP10-4P60372 401 aaPredicted RBP14.83□□□□□ -0.04
USP4-208ENST00000464168 Q8N976 141 aa14.83□□□□□ -0.04
USP4-208ENST00000464168 RBFOX3A6NFN3 312 aa14.82□□□□□ -0.04
USP4-208ENST00000464168 FABP5P3A8MUU1 101 aa14.82□□□□□ -0.04
USP4-208ENST00000464168 CXorf1O96002 111 aa14.82□□□□□ -0.04
USP4-208ENST00000464168 ATP6V0CP27449 155 aa14.82□□□□□ -0.04
USP4-208ENST00000464168 DMRTA1Q5VZB9 504 aa14.82□□□□□ -0.04
USP4-208ENST00000464168 NIT1Q86X76 327 aa14.82□□□□□ -0.04
USP4-208ENST00000464168 CHAC1Q9BUX1 264 aa14.82□□□□□ -0.04
USP4-208ENST00000464168 IL36BQ9NZH7 164 aa14.82□□□□□ -0.04
USP4-208ENST00000464168 MBP02144 154 aa14.81□□□□□ -0.04
USP4-208ENST00000464168 SERF2P84101 59 aa14.81□□□□□ -0.04
USP4-208ENST00000464168 RMI2Q96E14 147 aa14.81□□□□□ -0.04
USP4-208ENST00000464168 ARL2-SNX15V9GYD0 113 aa14.81□□□□□ -0.04
USP4-208ENST00000464168 ACTR3CQ9C0K3 210 aaPredicted RBP14.8□□□□□ -0.04
USP4-208ENST00000464168 KLK12Q9UKR0 248 aa14.8□□□□□ -0.04
USP4-208ENST00000464168 URGCP-MRPS24S4R325 110 aa14.8□□□□□ -0.04
USP4-208ENST00000464168 FAT3Q8TDW7 4589 aa14.79□□□□□ -0.04
USP4-208ENST00000464168 IGKV2D-24A0A075B6R9 120 aa14.79□□□□□ -0.04
USP4-208ENST00000464168 A0A1W2PRE2 83 aa14.79□□□□□ -0.04
USP4-208ENST00000464168 TNFSF18Q9UNG2 199 aa14.79□□□□□ -0.04
USP4-208ENST00000464168 B4DEV8 164 aa14.78□□□□□ -0.04
USP4-208ENST00000464168 H3BVH4 76 aa14.78□□□□□ -0.04
USP4-208ENST00000464168 DEFA1P59665 94 aa14.78□□□□□ -0.04
USP4-208ENST00000464168 DEFA3P59666 94 aa14.78□□□□□ -0.04
USP4-208ENST00000464168 CIRBP-AS1Q8TBR5 109 aa14.78□□□□□ -0.04
USP4-208ENST00000464168 RHODO00212 210 aa14.77□□□□□ -0.05
USP4-208ENST00000464168 ARMS2P0C7Q2 107 aa14.77□□□□□ -0.05
USP4-208ENST00000464168 SEC11BP0C7V7 166 aa14.77□□□□□ -0.05
USP4-208ENST00000464168 CRIP1P50238 77 aa14.77□□□□□ -0.05
USP4-208ENST00000464168 DNLZQ5SXM8 178 aa14.77□□□□□ -0.05
USP4-208ENST00000464168 AQP10Q96PS8 301 aa14.77□□□□□ -0.05
USP4-208ENST00000464168 KRBOX1C9JBD0 128 aa14.76□□□□□ -0.05
USP4-208ENST00000464168 IFNA7P01567 189 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms