RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 TMEM213A2RRL7 107 aa5.71□□□□□ -1.5
VPS53-204ENST00000437048 CRYGBP07316 175 aa5.71□□□□□ -1.5
VPS53-204ENST00000437048 Q6ZRM9 215 aa5.71□□□□□ -1.5
VPS53-204ENST00000437048 C9orf47Q6ZRZ4 202 aa5.71□□□□□ -1.5
VPS53-204ENST00000437048 SMIM26A0A096LP01 95 aa5.71□□□□□ -1.5
VPS53-204ENST00000437048 COX7A2LO14548 114 aa5.7□□□□□ -1.5
VPS53-204ENST00000437048 MTORP42345 2549 aa5.7□□□□□ -1.5
VPS53-204ENST00000437048 ZFHX2Q9C0A1 2572 aaPredicted RBP5.7□□□□□ -1.5
VPS53-204ENST00000437048 FLG2Q5D862 2391 aaPredicted RBP5.7□□□□□ -1.5
VPS53-204ENST00000437048 PIEZO1Q92508 2521 aa5.7□□□□□ -1.5
VPS53-204ENST00000437048 CELA3AP09093 270 aa5.7□□□□□ -1.5
VPS53-204ENST00000437048 RNASE8Q8TDE3 154 aaKnown RBP5.7□□□□□ -1.5
VPS53-204ENST00000437048 KIAA1671Q9BY89 1806 aa5.7□□□□□ -1.5
VPS53-204ENST00000437048 RNF183Q96D59 192 aa5.7□□□□□ -1.5
VPS53-204ENST00000437048 NDUFA11Q86Y39 141 aa5.7□□□□□ -1.5
VPS53-204ENST00000437048 DYNAPQ8N1N2 210 aa5.7□□□□□ -1.5
VPS53-204ENST00000437048 SPRY4Q9C004 299 aa5.7□□□□□ -1.5
VPS53-204ENST00000437048 MRPL36Q9P0J6 103 aaKnown RBP5.7□□□□□ -1.5
VPS53-204ENST00000437048 TRAV25A0A0B4J276 109 aa5.7□□□□□ -1.5
VPS53-204ENST00000437048 PIK3CD-AS1Q5SR53 167 aa5.7□□□□□ -1.5
VPS53-204ENST00000437048 PPIFP30405 207 aaKnown RBP5.7□□□□□ -1.5
VPS53-204ENST00000437048 HIST2H2BCQ6DN03 193 aa5.7□□□□□ -1.5
VPS53-204ENST00000437048 HIST2H2BDQ6DRA6 164 aa5.7□□□□□ -1.5
VPS53-204ENST00000437048 SND1-IT1Q9HBX3 110 aa5.7□□□□□ -1.5
VPS53-204ENST00000437048 MDFICQ9P1T7 246 aa5.7□□□□□ -1.5
VPS53-204ENST00000437048 DUX4L9Q6RFH8 374 aaPredicted RBP5.69□□□□□ -1.5
VPS53-204ENST00000437048 GAFA1Q96PS6 74 aa5.69□□□□□ -1.5
VPS53-204ENST00000437048 LINC00527Q9UJ94 153 aa5.69□□□□□ -1.5
VPS53-204ENST00000437048 CD33P20138 364 aa5.69□□□□□ -1.5
VPS53-204ENST00000437048 ODF1Q14990 250 aa5.69□□□□□ -1.5
VPS53-204ENST00000437048 CENPVL3A0A0U1RRI6 287 aa5.69□□□□□ -1.5
VPS53-204ENST00000437048 BUB3O43684 328 aa5.69□□□□□ -1.5
VPS53-204ENST00000437048 IGKV3-20P01619 116 aa5.69□□□□□ -1.5
VPS53-204ENST00000437048 IGKV1D-17A0A075B6S4 117 aa5.68□□□□□ -1.5
VPS53-204ENST00000437048 TRAV4A0A0B4J268 109 aa5.68□□□□□ -1.5
VPS53-204ENST00000437048 IGHV7-4-1A0A0J9YVY3 117 aa5.68□□□□□ -1.5
VPS53-204ENST00000437048 TRBV30A0A0K0K1B3 111 aa5.68□□□□□ -1.5
VPS53-204ENST00000437048 MIAQ16674 131 aa5.68□□□□□ -1.5
VPS53-204ENST00000437048 CD177Q8N6Q3 437 aa5.68□□□□□ -1.5
VPS53-204ENST00000437048 WFDC9Q8NEX5 89 aa5.68□□□□□ -1.5
VPS53-204ENST00000437048 PRR19A6NJB7 356 aa5.68□□□□□ -1.5
VPS53-204ENST00000437048 TRBV12-3P01733 135 aa5.68□□□□□ -1.5
VPS53-204ENST00000437048 RFPL3SP0C7P2 107 aa5.68□□□□□ -1.5
VPS53-204ENST00000437048 IGHV3-64A0A075B6Q5 118 aa5.68□□□□□ -1.5
VPS53-204ENST00000437048 FSTL3O95633 263 aa5.68□□□□□ -1.5
VPS53-204ENST00000437048 LY6EQ16553 131 aa5.68□□□□□ -1.5
VPS53-204ENST00000437048 IGHV3OR16-8A0A075B7F1 116 aa5.68□□□□□ -1.5
VPS53-204ENST00000437048 A0A1B0GUS0 222 aa5.68□□□□□ -1.5
VPS53-204ENST00000437048 ZNF726P1Q15940 193 aa5.68□□□□□ -1.5
VPS53-204ENST00000437048 COX7CP15954 63 aa5.68□□□□□ -1.5
VPS53-204ENST00000437048 TGFBR3LH3BV60 316 aa5.68□□□□□ -1.5
VPS53-204ENST00000437048 PIP4P2Q8N4L2 257 aa5.68□□□□□ -1.5
VPS53-204ENST00000437048 Q9H8V8 135 aa5.68□□□□□ -1.5
VPS53-204ENST00000437048 K7EMT4 169 aa5.67□□□□□ -1.5
VPS53-204ENST00000437048 FANCD2OSQ96PS1 177 aa5.67□□□□□ -1.5
VPS53-204ENST00000437048 SERP1Q9Y6X1 66 aa5.67□□□□□ -1.5
VPS53-204ENST00000437048 IGLV3-9A0A075B6K5 115 aa5.67□□□□□ -1.5
VPS53-204ENST00000437048 FDCSPQ8NFU4 85 aa5.67□□□□□ -1.5
VPS53-204ENST00000437048 COLQQ9Y215 455 aaPredicted RBP5.67□□□□□ -1.5
VPS53-204ENST00000437048 TINCRA0A1B0GVN0 87 aa5.67□□□□□ -1.5
VPS53-204ENST00000437048 ZNF672Q499Z4 452 aaPredicted RBP5.67□□□□□ -1.5
VPS53-204ENST00000437048 IGFL3Q6UXB1 125 aa5.67□□□□□ -1.5
VPS53-204ENST00000437048 IGF2BP2-AS1Q96M15 143 aa5.67□□□□□ -1.5
VPS53-204ENST00000437048 S4R3C0 116 aa5.67□□□□□ -1.5
VPS53-204ENST00000437048 IGKV1-16P04430 117 aa5.67□□□□□ -1.5
VPS53-204ENST00000437048 COX7B2Q8TF08 81 aa5.67□□□□□ -1.5
VPS53-204ENST00000437048 DKK2Q9UBU2 259 aa5.67□□□□□ -1.5
VPS53-204ENST00000437048 DAD1P61803 113 aa5.67□□□□□ -1.5
VPS53-204ENST00000437048 BCE1O60756 84 aa5.67□□□□□ -1.5
VPS53-204ENST00000437048 AMTNQ6UX39 209 aa5.67□□□□□ -1.5
VPS53-204ENST00000437048 TLN1Q9Y490 2541 aaKnown RBP5.67□□□□□ -1.5
VPS53-204ENST00000437048 PSCAO43653 123 aa5.67□□□□□ -1.5
VPS53-204ENST00000437048 C9orf106Q8NAJ2 232 aa5.67□□□□□ -1.5
VPS53-204ENST00000437048 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP5.66□□□□□ -1.5
VPS53-204ENST00000437048 FAM201AQ5SY85 155 aa5.66□□□□□ -1.5
VPS53-204ENST00000437048 Q8TAT8 98 aa5.66□□□□□ -1.5
VPS53-204ENST00000437048 IGKV1-6A0A0C4DH72 117 aa5.66□□□□□ -1.5
VPS53-204ENST00000437048 SPTSSBQ8NFR3 76 aa5.66□□□□□ -1.5
VPS53-204ENST00000437048 PRB1P04280 392 aa5.66□□□□□ -1.5
VPS53-204ENST00000437048 VPREB1P12018 145 aa5.66□□□□□ -1.5
VPS53-204ENST00000437048 LINC01356Q8N9X3 169 aa5.66□□□□□ -1.5
VPS53-204ENST00000437048 IGHV3-35A0A0C4DH35 117 aa5.66□□□□□ -1.5
VPS53-204ENST00000437048 A0A0J9YX75 114 aa5.66□□□□□ -1.5
VPS53-204ENST00000437048 NXPH4O95158 308 aa5.66□□□□□ -1.5
VPS53-204ENST00000437048 MLST8Q9BVC4 326 aa5.66□□□□□ -1.5
VPS53-204ENST00000437048 IGHV3OR16-13A0A075B7E8 117 aa5.66□□□□□ -1.5
VPS53-204ENST00000437048 IGHV3-74A0A0B4J1X5 117 aa5.66□□□□□ -1.5
VPS53-204ENST00000437048 A0A1B0GXF2 115 aa5.66□□□□□ -1.5
VPS53-204ENST00000437048 C15orf65H3BRN8 121 aa5.66□□□□□ -1.5
VPS53-204ENST00000437048 ZNF491Q8N8L2 437 aa5.66□□□□□ -1.5
VPS53-204ENST00000437048 NRACQ8N912 160 aa5.66□□□□□ -1.5
VPS53-204ENST00000437048 IGKV3D-20A0A0C4DH25 116 aa5.66□□□□□ -1.5
VPS53-204ENST00000437048 A0A1B0GW54 56 aa5.66□□□□□ -1.5
VPS53-204ENST00000437048 FAM19A3Q7Z5A8 133 aa5.66□□□□□ -1.5
VPS53-204ENST00000437048 IGHV3-49A0A0A0MS15 119 aa5.66□□□□□ -1.5
VPS53-204ENST00000437048 FXYD7P58549 80 aa5.66□□□□□ -1.5
VPS53-204ENST00000437048 C14orf177Q52M58 125 aa5.66□□□□□ -1.5
VPS53-204ENST00000437048 WFDC12Q8WWY7 111 aa5.66□□□□□ -1.5
VPS53-204ENST00000437048 NUP210LQ5VU65 1888 aa5.66□□□□□ -1.5
VPS53-204ENST00000437048 RPL18AQ02543 176 aaKnown RBP5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms