RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 PHLDA3Q9Y5J5 127 aa19.59■□□□□ 0.73
LDB1-202ENST00000425280 RBMY1BA6NDE4 496 aaKnown RBP19.58■□□□□ 0.73
LDB1-202ENST00000425280 RBMY1EA6NEQ0 496 aaKnown RBP19.58■□□□□ 0.73
LDB1-202ENST00000425280 RBMY1DP0C7P1 496 aaKnown RBP19.58■□□□□ 0.73
LDB1-202ENST00000425280 FXYD7P58549 80 aa19.58■□□□□ 0.73
LDB1-202ENST00000425280 M0R381 172 aa19.58■□□□□ 0.72
LDB1-202ENST00000425280 SAP30O75446 220 aa19.57■□□□□ 0.72
LDB1-202ENST00000425280 CD7P09564 240 aa19.57■□□□□ 0.72
LDB1-202ENST00000425280 ODF3L2Q3SX64 289 aa19.57■□□□□ 0.72
LDB1-202ENST00000425280 NPYP01303 97 aa19.56■□□□□ 0.72
LDB1-202ENST00000425280 GAS8-AS1O95177 125 aa19.56■□□□□ 0.72
LDB1-202ENST00000425280 SCGB1D1O95968 90 aa19.56■□□□□ 0.72
LDB1-202ENST00000425280 PPBPP02775 128 aa19.56■□□□□ 0.72
LDB1-202ENST00000425280 PMCHL1Q16048 86 aa19.56■□□□□ 0.72
LDB1-202ENST00000425280 IGHV1OR15-1A0A075B7D0 117 aa19.55■□□□□ 0.72
LDB1-202ENST00000425280 CRXO43186 299 aaPredicted RBP19.55■□□□□ 0.72
LDB1-202ENST00000425280 PRSS3P2Q8NHM4 247 aa19.55■□□□□ 0.72
LDB1-202ENST00000425280 C2CD3Q4AC94 2353 aa19.54■□□□□ 0.72
LDB1-202ENST00000425280 IGHV1-24A0A0C4DH33 117 aa19.54■□□□□ 0.72
LDB1-202ENST00000425280 GSN-AS1Q9NRJ2 163 aa19.54■□□□□ 0.72
LDB1-202ENST00000425280 LOC389332A0A1B0GUA5 103 aa19.53■□□□□ 0.72
LDB1-202ENST00000425280 IFI27P40305 119 aaPredicted RBP19.53■□□□□ 0.72
LDB1-202ENST00000425280 KRTDAPP60985 99 aa19.53■□□□□ 0.72
LDB1-202ENST00000425280 IGHV3-16A0A0C4DH30 117 aa19.53■□□□□ 0.72
LDB1-202ENST00000425280 NXPH4O95158 308 aa19.53■□□□□ 0.72
LDB1-202ENST00000425280 RBMY1A1P0DJD3 496 aaKnown RBP19.53■□□□□ 0.72
LDB1-202ENST00000425280 RBMY1CP0DJD4 496 aa19.53■□□□□ 0.72
LDB1-202ENST00000425280 RBMY1FQ15415 496 aaKnown RBP19.53■□□□□ 0.72
LDB1-202ENST00000425280 IGLV1-51P01701 117 aa19.52■□□□□ 0.72
LDB1-202ENST00000425280 FA2HQ7L5A8 372 aa19.52■□□□□ 0.72
LDB1-202ENST00000425280 Q8N1Y9 231 aa19.52■□□□□ 0.72
LDB1-202ENST00000425280 FLNBO75369 2602 aaKnown RBP19.52■□□□□ 0.71
LDB1-202ENST00000425280 MUC4Q99102 2169 aa19.52■□□□□ 0.71
LDB1-202ENST00000425280 AP5S1Q9NUS5 200 aa19.52■□□□□ 0.71
LDB1-202ENST00000425280 GATA1P15976 413 aaPredicted RBP19.51■□□□□ 0.71
LDB1-202ENST00000425280 LAMTOR2Q9Y2Q5 125 aa19.51■□□□□ 0.71
LDB1-202ENST00000425280 C9orf85Q96MD7 179 aa19.5■□□□□ 0.71
LDB1-202ENST00000425280 MDFICQ9P1T7 246 aa19.5■□□□□ 0.71
LDB1-202ENST00000425280 TNFRSF6BO95407 300 aa19.5■□□□□ 0.71
LDB1-202ENST00000425280 C3orf79P0CE67 100 aa19.5■□□□□ 0.71
LDB1-202ENST00000425280 OR11H12B2RN74 326 aa19.49■□□□□ 0.71
LDB1-202ENST00000425280 TRAV26-2A0A0B4J265 109 aa19.48■□□□□ 0.71
LDB1-202ENST00000425280 C14orf178Q8N769 122 aaPredicted RBP19.48■□□□□ 0.71
LDB1-202ENST00000425280 CLUHP3Q96NS8 147 aa19.48■□□□□ 0.71
LDB1-202ENST00000425280 PF4P02776 101 aa19.48■□□□□ 0.71
LDB1-202ENST00000425280 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP19.48■□□□□ 0.71
LDB1-202ENST00000425280 Q8N976 141 aa19.48■□□□□ 0.71
LDB1-202ENST00000425280 DPH3P1Q9H4G8 78 aa19.48■□□□□ 0.71
LDB1-202ENST00000425280 AP1S3Q96PC3 154 aa19.47■□□□□ 0.71
LDB1-202ENST00000425280 MAP1LC3AQ9H492 121 aa19.47■□□□□ 0.71
LDB1-202ENST00000425280 S100A12P80511 92 aa19.47■□□□□ 0.71
LDB1-202ENST00000425280 LINC00482Q8N8I6 264 aa19.47■□□□□ 0.71
LDB1-202ENST00000425280 OR2K2Q8NGT1 345 aa19.47■□□□□ 0.71
LDB1-202ENST00000425280 NRACQ8N912 160 aa19.46■□□□□ 0.71
LDB1-202ENST00000425280 MRAP2Q96G30 205 aa19.46■□□□□ 0.71
LDB1-202ENST00000425280 STHQ8IWL8 128 aa19.45■□□□□ 0.7
LDB1-202ENST00000425280 TRGV11A0A075B6L2 103 aa19.44■□□□□ 0.7
LDB1-202ENST00000425280 LEPROTL1O95214 131 aa19.44■□□□□ 0.7
LDB1-202ENST00000425280 LINC00173Q6ZV60 143 aa19.44■□□□□ 0.7
LDB1-202ENST00000425280 F8P00451 2351 aa19.44■□□□□ 0.7
LDB1-202ENST00000425280 CBY3A6NI87 242 aa19.44■□□□□ 0.7
LDB1-202ENST00000425280 CMC4P56277 68 aaPredicted RBP19.43■□□□□ 0.7
LDB1-202ENST00000425280 TRPT1Q86TN4 253 aaKnown RBP19.43■□□□□ 0.7
LDB1-202ENST00000425280 KIF25-AS1Q9Y6Z4 181 aa19.43■□□□□ 0.7
LDB1-202ENST00000425280 BEAN1Q3B7T3 259 aa19.42■□□□□ 0.7
LDB1-202ENST00000425280 JPT2Q9H910 190 aa19.42■□□□□ 0.7
LDB1-202ENST00000425280 A0A096LNJ9 63 aa19.41■□□□□ 0.7
LDB1-202ENST00000425280 MGPP08493 103 aa19.41■□□□□ 0.7
LDB1-202ENST00000425280 BTF3P20290 206 aaKnown RBP19.41■□□□□ 0.7
LDB1-202ENST00000425280 NIPBLQ6KC79 2804 aaeCLIP19.41■□□□□ 0.75e-6■□□□□ 10.2
LDB1-202ENST00000425280 TEX43Q6ZNM6 134 aa19.4■□□□□ 0.7
LDB1-202ENST00000425280 ZNF664Q8N3J9 261 aa19.4■□□□□ 0.7
LDB1-202ENST00000425280 LINC01546A6NGU7 62 aa19.4■□□□□ 0.7
LDB1-202ENST00000425280 INSP01308 110 aa19.4■□□□□ 0.7
LDB1-202ENST00000425280 HTN1P15515 57 aa19.4■□□□□ 0.7
LDB1-202ENST00000425280 LINC00315P59091 139 aa19.4■□□□□ 0.7
LDB1-202ENST00000425280 POM121L12Q8N7R1 296 aa19.4■□□□□ 0.7
LDB1-202ENST00000425280 NXT2Q9NPJ8 142 aaKnown RBP19.4■□□□□ 0.7
LDB1-202ENST00000425280 PRSS47A8MTI9 375 aa19.39■□□□□ 0.69
LDB1-202ENST00000425280 SYT8Q8NBV8 401 aa19.39■□□□□ 0.69
LDB1-202ENST00000425280 FAM110AQ9BQ89 295 aa19.39■□□□□ 0.69
LDB1-202ENST00000425280 DEFB125Q8N687 156 aa19.39■□□□□ 0.69
LDB1-202ENST00000425280 C20orf144Q9BQM9 153 aa19.39■□□□□ 0.69
LDB1-202ENST00000425280 PRO1933Q9H354 126 aa19.39■□□□□ 0.69
LDB1-202ENST00000425280 C19orf73Q9NVV2 129 aa19.39■□□□□ 0.69
LDB1-202ENST00000425280 IGLV2-18A0A075B6J9 118 aa19.38■□□□□ 0.69
LDB1-202ENST00000425280 SMIM17P0DL12 118 aa19.38■□□□□ 0.69
LDB1-202ENST00000425280 PKIAP61925 76 aa19.38■□□□□ 0.69
LDB1-202ENST00000425280 RASL10AQ92737 203 aa19.38■□□□□ 0.69
LDB1-202ENST00000425280 TMEM70Q9BUB7 260 aa19.38■□□□□ 0.69
LDB1-202ENST00000425280 PRM2P04554 102 aa19.37■□□□□ 0.69
LDB1-202ENST00000425280 Q8N8P6 123 aa19.37■□□□□ 0.69
LDB1-202ENST00000425280 CITED1Q99966 193 aa19.37■□□□□ 0.69
LDB1-202ENST00000425280 XCL2Q9UBD3 114 aa19.37■□□□□ 0.69
LDB1-202ENST00000425280 HSPB8Q9UJY1 196 aa19.37■□□□□ 0.69
LDB1-202ENST00000425280 LINC01587Q99440 93 aa19.37■□□□□ 0.69
LDB1-202ENST00000425280 LINC00467Q9BRT7 94 aa19.37■□□□□ 0.69
LDB1-202ENST00000425280 A0A087WWL8 130 aa19.36■□□□□ 0.69
LDB1-202ENST00000425280 SPATA12Q7Z6I5 190 aa19.36■□□□□ 0.69
LDB1-202ENST00000425280 WFDC10AQ9H1F0 79 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 139.4 ms