RNA–Protein interactions for RNA: ENST00000416649.6

NCKIPSD-204, Transcript of NCK interacting protein with SH3 domain, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NCKIPSD, Length 2,925 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-204ENST00000416649 RHODO00212 210 aa11.32□□□□□ -0.6
NCKIPSD-204ENST00000416649 CRYGBP07316 175 aa11.32□□□□□ -0.6
NCKIPSD-204ENST00000416649 RPL7P18124 248 aaKnown RBP11.32□□□□□ -0.6
NCKIPSD-204ENST00000416649 ADIPOQQ15848 244 aa11.32□□□□□ -0.6
NCKIPSD-204ENST00000416649 LINC00311Q8N616 119 aa11.32□□□□□ -0.6
NCKIPSD-204ENST00000416649 CITED1Q99966 193 aa11.32□□□□□ -0.6
NCKIPSD-204ENST00000416649 HIF1ANQ9NWT6 349 aa11.32□□□□□ -0.6
NCKIPSD-204ENST00000416649 IGSF10Q6WRI0 2623 aa11.32□□□□□ -0.6
NCKIPSD-204ENST00000416649 IGHV3OR16-13A0A075B7E8 117 aa11.32□□□□□ -0.6
NCKIPSD-204ENST00000416649 IGHV3-74A0A0B4J1X5 117 aa11.32□□□□□ -0.6
NCKIPSD-204ENST00000416649 IFITM1P13164 125 aa11.32□□□□□ -0.6
NCKIPSD-204ENST00000416649 FAM159AQ6UWV7 190 aa11.32□□□□□ -0.6
NCKIPSD-204ENST00000416649 Q6ZQT7 251 aa11.32□□□□□ -0.6
NCKIPSD-204ENST00000416649 IGHV3-66A0A0C4DH42 116 aa11.32□□□□□ -0.6
NCKIPSD-204ENST00000416649 LOXP28300 417 aaPredicted RBP11.32□□□□□ -0.6
NCKIPSD-204ENST00000416649 IGKV3D-20A0A0C4DH25 116 aa11.31□□□□□ -0.6
NCKIPSD-204ENST00000416649 CD7P09564 240 aa11.31□□□□□ -0.6
NCKIPSD-204ENST00000416649 CNFNQ9BYD5 112 aa11.31□□□□□ -0.6
NCKIPSD-204ENST00000416649 C11orf21Q9P2W6 132 aa11.31□□□□□ -0.6
NCKIPSD-204ENST00000416649 NTN5Q8WTR8 489 aaPredicted RBP11.31□□□□□ -0.6
NCKIPSD-204ENST00000416649 FAM110AQ9BQ89 295 aa11.31□□□□□ -0.6
NCKIPSD-204ENST00000416649 NOTCH3Q9UM47 2321 aa11.31□□□□□ -0.6
NCKIPSD-204ENST00000416649 CREBBPQ92793 2442 aa11.31□□□□□ -0.6
NCKIPSD-204ENST00000416649 LINC01619G3V211 115 aa11.3□□□□□ -0.6
NCKIPSD-204ENST00000416649 SMIM2Q9BVW6 85 aa11.3□□□□□ -0.6
NCKIPSD-204ENST00000416649 DYNLRB1Q9NP97 96 aa11.3□□□□□ -0.6
NCKIPSD-204ENST00000416649 CLEC3BP05452 202 aa11.3□□□□□ -0.6
NCKIPSD-204ENST00000416649 SRD5A1P18405 259 aa11.3□□□□□ -0.6
NCKIPSD-204ENST00000416649 Q6ZS46 218 aa11.3□□□□□ -0.6
NCKIPSD-204ENST00000416649 RASL10AQ92737 203 aa11.3□□□□□ -0.6
NCKIPSD-204ENST00000416649 BEX4Q9NWD9 120 aaPredicted RBP11.3□□□□□ -0.6
NCKIPSD-204ENST00000416649 CFC1BP0CG36 223 aa11.29□□□□□ -0.6
NCKIPSD-204ENST00000416649 CFC1P0CG37 223 aa11.29□□□□□ -0.6
NCKIPSD-204ENST00000416649 TMEM155Q4W5P6 130 aa11.29□□□□□ -0.6
NCKIPSD-204ENST00000416649 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.29□□□□□ -0.62e-7■■■□□ 18.1
NCKIPSD-204ENST00000416649 TRAV12-1A0A0B4J245 112 aa11.29□□□□□ -0.6
NCKIPSD-204ENST00000416649 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.29□□□□□ -0.6
NCKIPSD-204ENST00000416649 IGHG4P01861 327 aa11.29□□□□□ -0.6
NCKIPSD-204ENST00000416649 NEXN-AS1Q8NBZ9 246 aa11.29□□□□□ -0.6
NCKIPSD-204ENST00000416649 CSMD2Q7Z408 3487 aa11.29□□□□□ -0.6
NCKIPSD-204ENST00000416649 M0R381 172 aa11.29□□□□□ -0.6
NCKIPSD-204ENST00000416649 MFAP4P55083 255 aa11.29□□□□□ -0.6
NCKIPSD-204ENST00000416649 Q1RN00 199 aa11.29□□□□□ -0.6
NCKIPSD-204ENST00000416649 C2orf66Q6UXQ4 117 aa11.29□□□□□ -0.6
NCKIPSD-204ENST00000416649 BAALCQ8WXS3 180 aa11.29□□□□□ -0.6
NCKIPSD-204ENST00000416649 HES1Q14469 280 aa11.28□□□□□ -0.6
NCKIPSD-204ENST00000416649 C10orf126Q8N4M7 172 aa11.28□□□□□ -0.6
NCKIPSD-204ENST00000416649 RPL39LQ96EH5 51 aaKnown RBP11.28□□□□□ -0.6
NCKIPSD-204ENST00000416649 SMAD5-AS1Q9Y6J3 95 aa11.28□□□□□ -0.6
NCKIPSD-204ENST00000416649 C17orf100A8MU93 164 aa11.28□□□□□ -0.6
NCKIPSD-204ENST00000416649 E7EQL1 145 aa11.28□□□□□ -0.6
NCKIPSD-204ENST00000416649 USP9XQ93008 2570 aaPredicted RBP11.28□□□□□ -0.6
NCKIPSD-204ENST00000416649 IGHV3-49A0A0A0MS15 119 aa11.27□□□□□ -0.6
NCKIPSD-204ENST00000416649 TMEM178BH3BS89 294 aa11.27□□□□□ -0.6
NCKIPSD-204ENST00000416649 IGHV4-39P01824 125 aa11.27□□□□□ -0.6
NCKIPSD-204ENST00000416649 MGPP08493 103 aa11.27□□□□□ -0.6
NCKIPSD-204ENST00000416649 COX8CQ7Z4L0 72 aa11.27□□□□□ -0.6
NCKIPSD-204ENST00000416649 RAB1BQ9H0U4 201 aa11.27□□□□□ -0.6
NCKIPSD-204ENST00000416649 PRO1854Q9UHT4 67 aa11.27□□□□□ -0.6
NCKIPSD-204ENST00000416649 ORMDL2Q53FV1 153 aa11.27□□□□□ -0.61
NCKIPSD-204ENST00000416649 MEIG1Q5JSS6 88 aa11.27□□□□□ -0.61
NCKIPSD-204ENST00000416649 A0A0J9YY99 117 aa11.26□□□□□ -0.61
NCKIPSD-204ENST00000416649 BUB1B-PAK6H3BSN5 160 aa11.26□□□□□ -0.61
NCKIPSD-204ENST00000416649 TMEM170BQ5T4T1 132 aa11.26□□□□□ -0.61
NCKIPSD-204ENST00000416649 C15orf53Q8NAA6 179 aa11.26□□□□□ -0.61
NCKIPSD-204ENST00000416649 TMEM190Q8WZ59 177 aa11.26□□□□□ -0.61
NCKIPSD-204ENST00000416649 LRRK2Q5S007 2527 aa11.26□□□□□ -0.61
NCKIPSD-204ENST00000416649 DLX6P56179 175 aa11.26□□□□□ -0.61
NCKIPSD-204ENST00000416649 SUMO2P61956 95 aaKnown RBP11.26□□□□□ -0.61
NCKIPSD-204ENST00000416649 KLRB1Q12918 225 aa11.26□□□□□ -0.61
NCKIPSD-204ENST00000416649 C21orf62Q9NYP8 219 aa11.26□□□□□ -0.61
NCKIPSD-204ENST00000416649 POLQO75417 2590 aa11.26□□□□□ -0.61
NCKIPSD-204ENST00000416649 SORL1Q92673 2214 aa11.26□□□□□ -0.61
NCKIPSD-204ENST00000416649 TEX49A0A1B0GTD5 131 aa11.25□□□□□ -0.61
NCKIPSD-204ENST00000416649 TIMM23O14925 209 aa11.25□□□□□ -0.61
NCKIPSD-204ENST00000416649 Q8N1Y9 231 aa11.25□□□□□ -0.61
NCKIPSD-204ENST00000416649 C11orf86A6NJI1 115 aa11.25□□□□□ -0.61
NCKIPSD-204ENST00000416649 BRI3O95415 125 aa11.25□□□□□ -0.61
NCKIPSD-204ENST00000416649 TOMM6Q96B49 74 aa11.25□□□□□ -0.61
NCKIPSD-204ENST00000416649 COX6B1P14854 86 aa11.25□□□□□ -0.61
NCKIPSD-204ENST00000416649 SBSPONQ8IVN8 264 aa11.25□□□□□ -0.61
NCKIPSD-204ENST00000416649 C8orf31Q8N9H6 132 aa11.25□□□□□ -0.61
NCKIPSD-204ENST00000416649 TRAV8-4A0A0B4J246 113 aa11.24□□□□□ -0.61
NCKIPSD-204ENST00000416649 ASIPP42127 132 aa11.24□□□□□ -0.61
NCKIPSD-204ENST00000416649 C14orf178Q8N769 122 aaPredicted RBP11.24□□□□□ -0.61
NCKIPSD-204ENST00000416649 AGPAT4-IT1Q9H0P7 198 aa11.24□□□□□ -0.61
NCKIPSD-204ENST00000416649 DOPEY2Q9Y3R5 2298 aa11.24□□□□□ -0.61
NCKIPSD-204ENST00000416649 IGHV7-4-1A0A0J9YVY3 117 aa11.24□□□□□ -0.61
NCKIPSD-204ENST00000416649 DUSP14O95147 198 aaKnown RBP11.24□□□□□ -0.61
NCKIPSD-204ENST00000416649 UCNP55089 124 aa11.24□□□□□ -0.61
NCKIPSD-204ENST00000416649 HERVK_113P61574 105 aa11.24□□□□□ -0.61
NCKIPSD-204ENST00000416649 TMEM95Q3KNT9 176 aa11.24□□□□□ -0.61
NCKIPSD-204ENST00000416649 RNASE6Q93091 150 aaKnown RBP11.24□□□□□ -0.61
NCKIPSD-204ENST00000416649 ZNF462Q96JM2 2506 aa11.23□□□□□ -0.61
NCKIPSD-204ENST00000416649 IGLV1-47P01700 117 aa11.23□□□□□ -0.61
NCKIPSD-204ENST00000416649 CD3EP07766 207 aa11.23□□□□□ -0.61
NCKIPSD-204ENST00000416649 ADORA2A-AS1P86434 159 aa11.23□□□□□ -0.61
NCKIPSD-204ENST00000416649 TRAV2A0A0B4J234 112 aa11.22□□□□□ -0.61
NCKIPSD-204ENST00000416649 A4D1N5 150 aa11.22□□□□□ -0.61
NCKIPSD-204ENST00000416649 IGHV3-30P01768 117 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms