RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 KLK5Q9Y337 293 aaPredicted RBP6.25□□□□□ -1.41
SYNE1-210ENST00000409694 LYRM9A8MSI8 78 aa6.25□□□□□ -1.41
SYNE1-210ENST00000409694 LY6DQ14210 128 aa6.25□□□□□ -1.41
SYNE1-210ENST00000409694 IGKV3D-7A0A0C4DH55 119 aa6.25□□□□□ -1.41
SYNE1-210ENST00000409694 C10orf105Q8TEF2 133 aa6.25□□□□□ -1.41
SYNE1-210ENST00000409694 LINC00479Q96M42 142 aa6.25□□□□□ -1.41
SYNE1-210ENST00000409694 A0A1B0GUS0 222 aa6.25□□□□□ -1.41
SYNE1-210ENST00000409694 C10orf91Q5T1B1 145 aa6.24□□□□□ -1.41
SYNE1-210ENST00000409694 SEM1Q6ZVN7 128 aa6.24□□□□□ -1.41
SYNE1-210ENST00000409694 SPART-AS1P0CW21 52 aa6.24□□□□□ -1.41
SYNE1-210ENST00000409694 MST1P26927 711 aa6.24□□□□□ -1.41
SYNE1-210ENST00000409694 HIGD1BQ9P298 99 aa6.24□□□□□ -1.41
SYNE1-210ENST00000409694 SPTAN1Q13813 2472 aaKnown RBP6.24□□□□□ -1.41
SYNE1-210ENST00000409694 PRR31Q5SQ13 230 aa6.24□□□□□ -1.41
SYNE1-210ENST00000409694 A4D1N5 150 aa6.24□□□□□ -1.41
SYNE1-210ENST00000409694 ANKRD39Q53RE8 183 aa6.24□□□□□ -1.41
SYNE1-210ENST00000409694 IGHV1-58A0A0C4DH39 117 aa6.24□□□□□ -1.41
SYNE1-210ENST00000409694 PRB4P10163 310 aaPredicted RBP6.24□□□□□ -1.41
SYNE1-210ENST00000409694 GNLYP22749 145 aa6.24□□□□□ -1.41
SYNE1-210ENST00000409694 Q6ZUT4 128 aa6.24□□□□□ -1.41
SYNE1-210ENST00000409694 Q9HAA7 133 aa6.24□□□□□ -1.41
SYNE1-210ENST00000409694 LYPD3O95274 346 aa6.23□□□□□ -1.41
SYNE1-210ENST00000409694 HOXB4P17483 251 aaPredicted RBP6.23□□□□□ -1.41
SYNE1-210ENST00000409694 Q6ZQT7 251 aa6.23□□□□□ -1.41
SYNE1-210ENST00000409694 CYYR1Q96J86 154 aa6.23□□□□□ -1.41
SYNE1-210ENST00000409694 PRB2P02812 416 aaPredicted RBP6.23□□□□□ -1.41
SYNE1-210ENST00000409694 PRB1P04280 392 aa6.23□□□□□ -1.41
SYNE1-210ENST00000409694 GYPEP15421 78 aa6.23□□□□□ -1.41
SYNE1-210ENST00000409694 FXYD5Q96DB9 178 aa6.23□□□□□ -1.41
SYNE1-210ENST00000409694 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.23□□□□□ -1.41
SYNE1-210ENST00000409694 IGKV2-29A2NJV5 120 aaPredicted RBP6.23□□□□□ -1.41
SYNE1-210ENST00000409694 C3orf22Q8N5N4 141 aa6.23□□□□□ -1.41
SYNE1-210ENST00000409694 FAM236DA0A1B0GTK5 79 aa6.23□□□□□ -1.41
SYNE1-210ENST00000409694 FAM236CP0DP71 79 aa6.23□□□□□ -1.41
SYNE1-210ENST00000409694 AMTNQ6UX39 209 aa6.23□□□□□ -1.41
SYNE1-210ENST00000409694 FANCD2OSQ96PS1 177 aa6.23□□□□□ -1.41
SYNE1-210ENST00000409694 LMO1P25800 156 aa6.23□□□□□ -1.41
SYNE1-210ENST00000409694 RNF183Q96D59 192 aa6.23□□□□□ -1.41
SYNE1-210ENST00000409694 RUSC1-AS1Q66K80 236 aa6.23□□□□□ -1.41
SYNE1-210ENST00000409694 Q8N1Y9 231 aa6.23□□□□□ -1.41
SYNE1-210ENST00000409694 FGF23Q9GZV9 251 aaPredicted RBP6.23□□□□□ -1.41
SYNE1-210ENST00000409694 TANC1Q9C0D5 1861 aa6.23□□□□□ -1.41
SYNE1-210ENST00000409694 FREM1Q5H8C1 2179 aa6.22□□□□□ -1.41
SYNE1-210ENST00000409694 IGLC1P0CG04 106 aa6.22□□□□□ -1.41
SYNE1-210ENST00000409694 ADCYAP1P18509 176 aa6.22□□□□□ -1.41
SYNE1-210ENST00000409694 RNASE13Q5GAN3 156 aaKnown RBP6.22□□□□□ -1.41
SYNE1-210ENST00000409694 FAM110AQ9BQ89 295 aa6.22□□□□□ -1.41
SYNE1-210ENST00000409694 MED12LQ86YW9 2145 aa6.22□□□□□ -1.41
SYNE1-210ENST00000409694 TRBV7-3A0A075B6L6 115 aa6.22□□□□□ -1.41
SYNE1-210ENST00000409694 RNF223E7ERA6 249 aa6.22□□□□□ -1.41
SYNE1-210ENST00000409694 Q96MF0 132 aa6.22□□□□□ -1.41
SYNE1-210ENST00000409694 VPREB3Q9UKI3 123 aa6.22□□□□□ -1.41
SYNE1-210ENST00000409694 UQCRQO14949 82 aa6.22□□□□□ -1.41
SYNE1-210ENST00000409694 COL8A2P25067 703 aa6.22□□□□□ -1.41
SYNE1-210ENST00000409694 CEP192Q8TEP8 1941 aa6.22□□□□□ -1.41
SYNE1-210ENST00000409694 CCL25O15444 150 aa6.22□□□□□ -1.41
SYNE1-210ENST00000409694 ZNF106Q9H2Y7 1883 aaKnown RBP6.22□□□□□ -1.41
SYNE1-210ENST00000409694 SHANK1Q9Y566 2161 aa6.22□□□□□ -1.41
SYNE1-210ENST00000409694 PINLYPA6NC86 204 aa6.22□□□□□ -1.41
SYNE1-210ENST00000409694 A0A096LPF7 62 aa6.22□□□□□ -1.41
SYNE1-210ENST00000409694 COX7BP24311 80 aa6.22□□□□□ -1.41
SYNE1-210ENST00000409694 LYPD2Q6UXB3 125 aa6.22□□□□□ -1.41
SYNE1-210ENST00000409694 LINC00643Q86TS7 51 aa6.22□□□□□ -1.41
SYNE1-210ENST00000409694 BPY2O14599 106 aa6.21□□□□□ -1.41
SYNE1-210ENST00000409694 CD59P13987 128 aa6.21□□□□□ -1.41
SYNE1-210ENST00000409694 FOXI1Q12951 378 aa6.21□□□□□ -1.41
SYNE1-210ENST00000409694 SERP1Q9Y6X1 66 aa6.21□□□□□ -1.41
SYNE1-210ENST00000409694 PCNX1Q96RV3 2341 aa6.21□□□□□ -1.41
SYNE1-210ENST00000409694 ZNF747Q9BV97 191 aa6.21□□□□□ -1.42
SYNE1-210ENST00000409694 C11orf86A6NJI1 115 aa6.21□□□□□ -1.42
SYNE1-210ENST00000409694 CCL24O00175 119 aa6.21□□□□□ -1.42
SYNE1-210ENST00000409694 FOXL2NBQ6ZUU3 175 aa6.21□□□□□ -1.42
SYNE1-210ENST00000409694 GVINP1Q7Z2Y8 2422 aa6.21□□□□□ -1.42
SYNE1-210ENST00000409694 NCR3O14931 201 aa6.2□□□□□ -1.42
SYNE1-210ENST00000409694 IGHV2-5P01817 119 aa6.2□□□□□ -1.42
SYNE1-210ENST00000409694 TOMM6Q96B49 74 aa6.2□□□□□ -1.42
SYNE1-210ENST00000409694 PIFOQ8TCI5 191 aa6.2□□□□□ -1.42
SYNE1-210ENST00000409694 E7EQL1 145 aa6.2□□□□□ -1.42
SYNE1-210ENST00000409694 UNQ6494/PRO21346Q6UXR6 183 aa6.2□□□□□ -1.42
SYNE1-210ENST00000409694 F8W735 103 aaPredicted RBP6.2□□□□□ -1.42
SYNE1-210ENST00000409694 MED14OSP0DP75 135 aa6.2□□□□□ -1.42
SYNE1-210ENST00000409694 A0A0J9YY99 117 aa6.19□□□□□ -1.42
SYNE1-210ENST00000409694 WFDC11Q8NEX6 87 aa6.19□□□□□ -1.42
SYNE1-210ENST00000409694 EPOPA6NHQ4 379 aa6.19□□□□□ -1.42
SYNE1-210ENST00000409694 ADAMTS9Q9P2N4 1935 aa6.19□□□□□ -1.42
SYNE1-210ENST00000409694 FLVCR1-AS1Q8TAF5 88 aa6.19□□□□□ -1.42
SYNE1-210ENST00000409694 PKDREJQ9NTG1 2253 aa6.19□□□□□ -1.42
SYNE1-210ENST00000409694 C5orf38Q86SI9 138 aa6.19□□□□□ -1.42
SYNE1-210ENST00000409694 LECT2O14960 151 aa6.18□□□□□ -1.42
SYNE1-210ENST00000409694 MPLKIPQ8TAP9 179 aa6.18□□□□□ -1.42
SYNE1-210ENST00000409694 C20orf173Q96LM9 149 aa6.18□□□□□ -1.42
SYNE1-210ENST00000409694 HHLA3Q9XRX5 114 aa6.18□□□□□ -1.42
SYNE1-210ENST00000409694 NUP210LQ5VU65 1888 aa6.18□□□□□ -1.42
SYNE1-210ENST00000409694 PRR20EP86478 221 aa6.18□□□□□ -1.42
SYNE1-210ENST00000409694 PRR20CP86479 221 aa6.18□□□□□ -1.42
SYNE1-210ENST00000409694 PRR20DP86480 221 aa6.18□□□□□ -1.42
SYNE1-210ENST00000409694 PRR20BP86481 221 aa6.18□□□□□ -1.42
SYNE1-210ENST00000409694 PRR20AP86496 221 aa6.18□□□□□ -1.42
SYNE1-210ENST00000409694 C2orf16Q68DN1 1984 aa6.18□□□□□ -1.42
SYNE1-210ENST00000409694 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms