RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 RPL35AP18077 110 aaKnown RBP8.45□□□□□ -1.06
CCDC40-204ENST00000397545 CFAP161Q6P656 301 aa8.45□□□□□ -1.06
CCDC40-204ENST00000397545 F8VRH5 84 aa8.45□□□□□ -1.06
CCDC40-204ENST00000397545 MORN3Q6PF18 240 aaPredicted RBP8.45□□□□□ -1.06
CCDC40-204ENST00000397545 XCL2Q9UBD3 114 aa8.45□□□□□ -1.06
CCDC40-204ENST00000397545 ZFHX4Q86UP3 3567 aa8.45□□□□□ -1.06
CCDC40-204ENST00000397545 IGHV3-38A0A0C4DH36 116 aa8.45□□□□□ -1.06
CCDC40-204ENST00000397545 SAP30O75446 220 aa8.45□□□□□ -1.06
CCDC40-204ENST00000397545 GP9P14770 177 aa8.45□□□□□ -1.06
CCDC40-204ENST00000397545 RPL36AP83881 106 aaKnown RBP8.45□□□□□ -1.06
CCDC40-204ENST00000397545 RNASE13Q5GAN3 156 aaKnown RBP8.45□□□□□ -1.06
CCDC40-204ENST00000397545 LY6G5BQ8NDX9 201 aa8.45□□□□□ -1.06
CCDC40-204ENST00000397545 TMEM190Q8WZ59 177 aa8.45□□□□□ -1.06
CCDC40-204ENST00000397545 RPL36ALQ969Q0 106 aaKnown RBP8.45□□□□□ -1.06
CCDC40-204ENST00000397545 DEFB125Q8N687 156 aa8.44□□□□□ -1.06
CCDC40-204ENST00000397545 WIPF2Q8TF74 440 aaPredicted RBP8.44□□□□□ -1.06
CCDC40-204ENST00000397545 HECTD1Q9ULT8 2610 aa8.44□□□□□ -1.06
CCDC40-204ENST00000397545 GNRH2O43555 120 aa8.44□□□□□ -1.06
CCDC40-204ENST00000397545 KLF5Q13887 457 aaPredicted RBP8.44□□□□□ -1.06
CCDC40-204ENST00000397545 SEM1Q6ZVN7 128 aa8.44□□□□□ -1.06
CCDC40-204ENST00000397545 KAAG1Q9UBP8 84 aa8.44□□□□□ -1.06
CCDC40-204ENST00000397545 ACANP16112 2415 aa8.44□□□□□ -1.06
CCDC40-204ENST00000397545 ARHGAP32A7KAX9 2087 aa8.44□□□□□ -1.06
CCDC40-204ENST00000397545 MYMXA0A1B0GTQ4 84 aa8.44□□□□□ -1.06
CCDC40-204ENST00000397545 RBMY1BA6NDE4 496 aaKnown RBP8.44□□□□□ -1.06
CCDC40-204ENST00000397545 RBMY1EA6NEQ0 496 aaKnown RBP8.44□□□□□ -1.06
CCDC40-204ENST00000397545 FAM223BA6NKX1 122 aa8.44□□□□□ -1.06
CCDC40-204ENST00000397545 K7EIM0 57 aa8.44□□□□□ -1.06
CCDC40-204ENST00000397545 RBMY1DP0C7P1 496 aaKnown RBP8.44□□□□□ -1.06
CCDC40-204ENST00000397545 RBMY1A1P0DJD3 496 aaKnown RBP8.44□□□□□ -1.06
CCDC40-204ENST00000397545 RBMY1CP0DJD4 496 aa8.44□□□□□ -1.06
CCDC40-204ENST00000397545 HLA-DRB4P13762 266 aa8.44□□□□□ -1.06
CCDC40-204ENST00000397545 MALP21145 153 aa8.44□□□□□ -1.06
CCDC40-204ENST00000397545 NSUN5P1Q3KNT7 163 aa8.44□□□□□ -1.06
CCDC40-204ENST00000397545 FAM223AQ8IWN6 122 aa8.44□□□□□ -1.06
CCDC40-204ENST00000397545 HLA-DRB4X5D2U9 266 aa8.44□□□□□ -1.06
CCDC40-204ENST00000397545 CFHR4Q92496 578 aa8.43□□□□□ -1.06
CCDC40-204ENST00000397545 IGF2BP2-AS1Q96M15 143 aa8.43□□□□□ -1.06
CCDC40-204ENST00000397545 PMVKQ15126 192 aa8.43□□□□□ -1.06
CCDC40-204ENST00000397545 KLHL30-AS1Q8NEE0 82 aa8.43□□□□□ -1.06
CCDC40-204ENST00000397545 TP73-AS1Q9UF72 201 aa8.43□□□□□ -1.06
CCDC40-204ENST00000397545 ZNF415Q09FC8 603 aa8.43□□□□□ -1.06
CCDC40-204ENST00000397545 SH2D6Q7Z4S9 175 aa8.43□□□□□ -1.06
CCDC40-204ENST00000397545 SHISA9B4DS77 424 aa8.42□□□□□ -1.06
CCDC40-204ENST00000397545 CFHR3Q02985 330 aa8.42□□□□□ -1.06
CCDC40-204ENST00000397545 IGFL2Q6UWQ7 119 aa8.42□□□□□ -1.06
CCDC40-204ENST00000397545 ZNF503Q96F45 646 aa8.42□□□□□ -1.06
CCDC40-204ENST00000397545 PRSS29PA6NIE9 313 aa8.42□□□□□ -1.06
CCDC40-204ENST00000397545 Q71RC1 249 aaPredicted RBP8.42□□□□□ -1.06
CCDC40-204ENST00000397545 TRBV25-1A0A075B6N4 114 aa8.41□□□□□ -1.06
CCDC40-204ENST00000397545 IGHV1-69DA0A0B4J2H0 117 aa8.41□□□□□ -1.06
CCDC40-204ENST00000397545 IGHV2-70DA0A0C4DH43 119 aa8.41□□□□□ -1.06
CCDC40-204ENST00000397545 I3L2K1 104 aa8.41□□□□□ -1.06
CCDC40-204ENST00000397545 IGHV1-69P01742 117 aa8.41□□□□□ -1.06
CCDC40-204ENST00000397545 DEFB130BP0DP73 79 aa8.41□□□□□ -1.06
CCDC40-204ENST00000397545 DEFB130AP0DP74 79 aa8.41□□□□□ -1.06
CCDC40-204ENST00000397545 FGF6P10767 208 aa8.41□□□□□ -1.06
CCDC40-204ENST00000397545 DEFB1P60022 68 aa8.41□□□□□ -1.06
CCDC40-204ENST00000397545 C12orf74Q32Q52 190 aa8.41□□□□□ -1.06
CCDC40-204ENST00000397545 CEND1Q8N111 149 aa8.41□□□□□ -1.06
CCDC40-204ENST00000397545 FN1P02751 2386 aaKnown RBP8.41□□□□□ -1.06
CCDC40-204ENST00000397545 DPH3Q96FX2 82 aa8.41□□□□□ -1.06
CCDC40-204ENST00000397545 A0A087WX48 190 aa8.41□□□□□ -1.06
CCDC40-204ENST00000397545 TEX48A0A1B0GUV7 120 aa8.41□□□□□ -1.06
CCDC40-204ENST00000397545 VWC2LB2RUY7 222 aa8.4□□□□□ -1.06
CCDC40-204ENST00000397545 PRAC2D3DTV9 90 aa8.4□□□□□ -1.06
CCDC40-204ENST00000397545 CRPP02741 224 aa8.4□□□□□ -1.06
CCDC40-204ENST00000397545 C6orf226Q5I0X4 101 aa8.4□□□□□ -1.06
CCDC40-204ENST00000397545 TRPT1Q86TN4 253 aaKnown RBP8.4□□□□□ -1.06
CCDC40-204ENST00000397545 AKAP13Q12802 2813 aa8.4□□□□□ -1.06
CCDC40-204ENST00000397545 MSMBP08118 114 aa8.4□□□□□ -1.06
CCDC40-204ENST00000397545 C22orf34Q6ZV56 151 aa8.4□□□□□ -1.06
CCDC40-204ENST00000397545 TMEM86BQ8N661 226 aa8.4□□□□□ -1.06
CCDC40-204ENST00000397545 GAGE12HA6NDE8 117 aa8.4□□□□□ -1.06
CCDC40-204ENST00000397545 LINC00322Q6ZN03 302 aaPredicted RBP8.4□□□□□ -1.06
CCDC40-204ENST00000397545 RPL39LQ96EH5 51 aaKnown RBP8.4□□□□□ -1.06
CCDC40-204ENST00000397545 HCFC1P51610 2035 aa8.4□□□□□ -1.07
CCDC40-204ENST00000397545 GAGE12JA6NER3 117 aa8.4□□□□□ -1.07
CCDC40-204ENST00000397545 RNF223E7ERA6 249 aa8.4□□□□□ -1.07
CCDC40-204ENST00000397545 P0C879 139 aa8.4□□□□□ -1.07
CCDC40-204ENST00000397545 AZU1P20160 251 aa8.4□□□□□ -1.07
CCDC40-204ENST00000397545 HIST1H4AP62805 103 aaKnown RBP8.4□□□□□ -1.07
CCDC40-204ENST00000397545 GAGE4Q13068 117 aa8.4□□□□□ -1.07
CCDC40-204ENST00000397545 GAGE5Q13069 117 aa8.4□□□□□ -1.07
CCDC40-204ENST00000397545 RASL10AQ92737 203 aa8.4□□□□□ -1.07
CCDC40-204ENST00000397545 LINC01545Q5VT33 79 aa8.39□□□□□ -1.07
CCDC40-204ENST00000397545 ZNF292O60281 2723 aa8.39□□□□□ -1.07
CCDC40-204ENST00000397545 IGHV1OR15-1A0A075B7D0 117 aa8.39□□□□□ -1.07
CCDC40-204ENST00000397545 CTSGP08311 255 aa8.39□□□□□ -1.07
CCDC40-204ENST00000397545 C1orf229Q6ZS94 237 aaPredicted RBP8.39□□□□□ -1.07
CCDC40-204ENST00000397545 PRRC2AP48634 2157 aaKnown RBP8.39□□□□□ -1.07
CCDC40-204ENST00000397545 J3QQQ9 107 aa8.39□□□□□ -1.07
CCDC40-204ENST00000397545 FXYD2P54710 66 aa8.39□□□□□ -1.07
CCDC40-204ENST00000397545 TCTEX1D4Q5JR98 221 aa8.39□□□□□ -1.07
CCDC40-204ENST00000397545 JPT2Q9H910 190 aa8.38□□□□□ -1.07
CCDC40-204ENST00000397545 PRO1854Q9UHT4 67 aa8.38□□□□□ -1.07
CCDC40-204ENST00000397545 NDUFA12Q9UI09 145 aa8.38□□□□□ -1.07
CCDC40-204ENST00000397545 F8W1H4 67 aa8.38□□□□□ -1.07
CCDC40-204ENST00000397545 LOXL1Q08397 574 aaPredicted RBP8.38□□□□□ -1.07
CCDC40-204ENST00000397545 IGHV7-81A0A0B4J1V7 117 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms