RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 MBD3L1Q8WWY6 194 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 PHB2Q99623 299 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 CMSS1Q9BQ75 279 aaKnown RBP0.89□□□□□ -2.27
LINC00643-201ENST00000334389 FAAP24Q9BTP7 215 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 PBDC1Q9BVG4 233 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 SLC35B3Q9H1N7 401 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 FBXL15Q9H469 300 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 CTNNBIP1Q9NSA3 81 aaPredicted RBP0.89□□□□□ -2.27
LINC00643-201ENST00000334389 PRO0461Q9UI25 63 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 PRO0255Q9UI72 69 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 ING4Q9UNL4 249 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 DNAJC13O75165 2243 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 GOLGA4Q13439 2230 aaKnown RBP0.89□□□□□ -2.27
LINC00643-201ENST00000334389 TEX50A0A1B0GTY4 177 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 FAM240AA0A1B0GVK7 77 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 SMCO3A2RU48 225 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 ANKRD65E5RJM6 399 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 H7C1C5 153 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 M0R036 132 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 M0R143 59 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 GEMIN2O14893 280 aaKnown RBP0.89□□□□□ -2.27
LINC00643-201ENST00000334389 OR7C1O76099 320 aaPredicted RBP0.89□□□□□ -2.27
LINC00643-201ENST00000334389 HLA-DQA2P01906 255 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 MBP02144 154 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 ARL3P36405 182 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 OPRK1P41145 380 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 NPBWR1P48145 328 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 CARTPTQ16568 116 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 KRTAP15-1Q3LI76 137 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 C2orf82Q6UX34 121 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 PQLC2Q6ZP29 291 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 SELENOHQ8IZQ5 122 aaKnown RBP0.89□□□□□ -2.27
LINC00643-201ENST00000334389 ST8SIA2Q92186 375 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 ARL11Q969Q4 196 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 C11orf52Q96A22 123 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 DNAJC30Q96LL9 226 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 HARBI1Q96MB7 349 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 UHRF2Q96PU4 802 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 MRPL20Q9BYC9 149 aaKnown RBP0.89□□□□□ -2.27
LINC00643-201ENST00000334389 CNFNQ9BYD5 112 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 TMEM126AQ9H061 195 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 TREM1Q9NP99 234 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 DNAJC27Q9NZQ0 273 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 OR1A1Q9P1Q5 309 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 TRAV8-2A0A0B4J237 113 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 TRBV7-7A0A0K0K1E9 115 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 A0A1W2PPV4 95 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 MEIS3P1A6NDR6 274 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 GAGE10A6NGK3 116 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 K7EMI3 77 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 HPGDSO60760 199 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 FCGR3BO75015 233 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 OR2J3O76001 311 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 MAS1P04201 325 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 IGLC1P0CG04 106 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 AKR1C4P17516 323 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 PCP4P48539 62 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 ERVK-16P61578 105 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 RPL11P62913 178 aaKnown RBP0.89□□□□□ -2.27
LINC00643-201ENST00000334389 SERF2P84101 59 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 TAL2Q16559 108 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 C5orf47Q569G3 176 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 CT83Q5H943 113 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 PRAMEF5Q5TYX0 476 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 OR5A1Q8NGJ0 315 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 OR1L4Q8NGR5 311 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 MCFD2Q8NI22 146 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 TRMT10AQ8TBZ6 339 aaKnown RBP0.89□□□□□ -2.27
LINC00643-201ENST00000334389 BLNKQ8WV28 456 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 SRSF12Q8WXF0 261 aaKnown RBP0.89□□□□□ -2.27
LINC00643-201ENST00000334389 PINX1Q96BK5 328 aaKnown RBP0.89□□□□□ -2.27
LINC00643-201ENST00000334389 SHANK2-AS3Q9BTD1 123 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 ERG28Q9UKR5 140 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 WDR83OSQ9Y284 106 aa0.89□□□□□ -2.27
LINC00643-201ENST00000334389 RCL1Q9Y2P8 373 aaKnown RBP0.89□□□□□ -2.27
LINC00643-201ENST00000334389 HEATR1Q9H583 2144 aaKnown RBP0.88□□□□□ -2.27
LINC00643-201ENST00000334389 IGKV1D-37A0A075B6S9 117 aa0.88□□□□□ -2.27
LINC00643-201ENST00000334389 A0A1B0GV90 55 aa0.88□□□□□ -2.27
LINC00643-201ENST00000334389 A8MWP4 228 aa0.88□□□□□ -2.27
LINC00643-201ENST00000334389 S1PR2O95136 353 aa0.88□□□□□ -2.27
LINC00643-201ENST00000334389 SOX14O95416 240 aa0.88□□□□□ -2.27
LINC00643-201ENST00000334389 NUDT3O95989 172 aa0.88□□□□□ -2.27
LINC00643-201ENST00000334389 IGKV1-39P01597 117 aa0.88□□□□□ -2.27
LINC00643-201ENST00000334389 IGKV1D-39P04432 117 aa0.88□□□□□ -2.27
LINC00643-201ENST00000334389 CTSGP08311 255 aa0.88□□□□□ -2.27
LINC00643-201ENST00000334389 MRPL3P09001 348 aaKnown RBP0.88□□□□□ -2.27
LINC00643-201ENST00000334389 PET100P0DJ07 73 aa0.88□□□□□ -2.27
LINC00643-201ENST00000334389 SAA1P0DJI8 122 aaPredicted RBP0.88□□□□□ -2.27
LINC00643-201ENST00000334389 IGLC2P0DOY2 106 aa0.88□□□□□ -2.27
LINC00643-201ENST00000334389 NFYAP23511 347 aaPredicted RBP0.88□□□□□ -2.27
LINC00643-201ENST00000334389 GATA2P23769 480 aaPredicted RBP0.88□□□□□ -2.27
LINC00643-201ENST00000334389 LPAR6P43657 344 aa0.88□□□□□ -2.27
LINC00643-201ENST00000334389 RPS10P46783 165 aaKnown RBP0.88□□□□□ -2.27
LINC00643-201ENST00000334389 SNRPD3P62318 126 aaKnown RBP0.88□□□□□ -2.27
LINC00643-201ENST00000334389 ERHP84090 104 aaKnown RBP0.88□□□□□ -2.27
LINC00643-201ENST00000334389 PEA15Q15121 130 aa0.88□□□□□ -2.27
LINC00643-201ENST00000334389 OR10J3Q5JRS4 329 aa0.88□□□□□ -2.27
LINC00643-201ENST00000334389 LCN15Q6UWW0 184 aa0.88□□□□□ -2.27
LINC00643-201ENST00000334389 NEXN-AS1Q8NBZ9 246 aa0.88□□□□□ -2.27
LINC00643-201ENST00000334389 OR4B1Q8NGF8 309 aa0.88□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms