RNA–Protein interactions for RNA: ENST00000273062.6

CTDSP1-201, Transcript of CTD small phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDSP1, Length 2,638 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSP1-201ENST00000273062 C9orf153Q5TBE3 101 aa12.05□□□□□ -0.48
CTDSP1-201ENST00000273062 NEXN-AS1Q8NBZ9 246 aa12.05□□□□□ -0.48
CTDSP1-201ENST00000273062 TRGV11A0A075B6L2 103 aa12.05□□□□□ -0.48
CTDSP1-201ENST00000273062 ZNF672Q499Z4 452 aaPredicted RBP12.05□□□□□ -0.48
CTDSP1-201ENST00000273062 LINC01560Q8TB33 94 aa12.05□□□□□ -0.48
CTDSP1-201ENST00000273062 TRAV12-1A0A0B4J245 112 aa12.04□□□□□ -0.48
CTDSP1-201ENST00000273062 RBAKDNA6NC62 111 aa12.04□□□□□ -0.48
CTDSP1-201ENST00000273062 TSPEAR-AS2P59090 65 aa12.04□□□□□ -0.48
CTDSP1-201ENST00000273062 CDSNQ15517 529 aa12.04□□□□□ -0.48
CTDSP1-201ENST00000273062 TMEM101Q96IK0 257 aa12.04□□□□□ -0.48
CTDSP1-201ENST00000273062 BEX4Q9NWD9 120 aaPredicted RBP12.04□□□□□ -0.48
CTDSP1-201ENST00000273062 MSRB2Q9Y3D2 182 aa12.04□□□□□ -0.48
CTDSP1-201ENST00000273062 IGHV3-72A0A0B4J1Y9 119 aa12.04□□□□□ -0.48
CTDSP1-201ENST00000273062 TMEM178BH3BS89 294 aa12.04□□□□□ -0.48
CTDSP1-201ENST00000273062 IGKV1-17P01599 117 aa12.04□□□□□ -0.48
CTDSP1-201ENST00000273062 LINC01620Q4KN68 170 aa12.04□□□□□ -0.48
CTDSP1-201ENST00000273062 DUX3Q96PT4 197 aa12.04□□□□□ -0.48
CTDSP1-201ENST00000273062 SHANK2-AS3Q9BTD1 123 aa12.04□□□□□ -0.48
CTDSP1-201ENST00000273062 M0R2P5 195 aa12.03□□□□□ -0.48
CTDSP1-201ENST00000273062 HLA-DMBP28068 263 aa12.03□□□□□ -0.48
CTDSP1-201ENST00000273062 PRB3Q04118 309 aaPredicted RBP12.03□□□□□ -0.48
CTDSP1-201ENST00000273062 C14orf178Q8N769 122 aaPredicted RBP12.03□□□□□ -0.48
CTDSP1-201ENST00000273062 RNASE6Q93091 150 aaKnown RBP12.03□□□□□ -0.48
CTDSP1-201ENST00000273062 SCGB3A1Q96QR1 104 aa12.03□□□□□ -0.48
CTDSP1-201ENST00000273062 CNFNQ9BYD5 112 aa12.03□□□□□ -0.48
CTDSP1-201ENST00000273062 NCOR2Q9Y618 2525 aa12.03□□□□□ -0.48
CTDSP1-201ENST00000273062 ZNF22P17026 224 aaPredicted RBP12.03□□□□□ -0.48
CTDSP1-201ENST00000273062 RPL13AP40429 203 aaKnown RBP12.03□□□□□ -0.48
CTDSP1-201ENST00000273062 TMEM200BQ69YZ2 307 aa12.03□□□□□ -0.48
CTDSP1-201ENST00000273062 TIMD4Q96H15 378 aa12.03□□□□□ -0.48
CTDSP1-201ENST00000273062 SIGLEC9Q9Y336 463 aa12.03□□□□□ -0.48
CTDSP1-201ENST00000273062 TACC2O95359 2948 aa12.02□□□□□ -0.48
CTDSP1-201ENST00000273062 LYNX1G3V0Z9 82 aa12.02□□□□□ -0.49
CTDSP1-201ENST00000273062 H3BMM0 161 aa12.02□□□□□ -0.49
CTDSP1-201ENST00000273062 WIPF1O43516 503 aa12.02□□□□□ -0.49
CTDSP1-201ENST00000273062 LYNX1P0DP58 116 aa12.02□□□□□ -0.49
CTDSP1-201ENST00000273062 DLX1P56177 255 aa12.02□□□□□ -0.49
CTDSP1-201ENST00000273062 OR4C13Q8NGP0 309 aa12.02□□□□□ -0.49
CTDSP1-201ENST00000273062 UBE2WQ96B02 151 aa12.02□□□□□ -0.49
CTDSP1-201ENST00000273062 DYNLRB1Q9NP97 96 aa12.02□□□□□ -0.49
CTDSP1-201ENST00000273062 H3BRN7 92 aa12.02□□□□□ -0.49
CTDSP1-201ENST00000273062 IGHV3-33P01772 117 aa12.02□□□□□ -0.49
CTDSP1-201ENST00000273062 HES1Q14469 280 aa12.02□□□□□ -0.49
CTDSP1-201ENST00000273062 POM121L12Q8N7R1 296 aa12.02□□□□□ -0.49
CTDSP1-201ENST00000273062 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.01□□□□□ -0.49
CTDSP1-201ENST00000273062 CNTFRP26992 372 aa12.01□□□□□ -0.49
CTDSP1-201ENST00000273062 ABCA4P78363 2273 aa12.01□□□□□ -0.49
CTDSP1-201ENST00000273062 ANKHD1Q8IWZ3 2542 aaKnown RBP12.01□□□□□ -0.49
CTDSP1-201ENST00000273062 LINC00574Q9H8X3 128 aa12.01□□□□□ -0.49
CTDSP1-201ENST00000273062 S4R3C0 116 aa12.01□□□□□ -0.49
CTDSP1-201ENST00000273062 J3KT08 172 aa12□□□□□ -0.49
CTDSP1-201ENST00000273062 DEFB104AQ8WTQ1 72 aa12□□□□□ -0.49
CTDSP1-201ENST00000273062 COL6A6A6NMZ7 2263 aa12□□□□□ -0.49
CTDSP1-201ENST00000273062 PMVKQ15126 192 aa12□□□□□ -0.49
CTDSP1-201ENST00000273062 IL17RELQ6ZVW7 336 aa12□□□□□ -0.49
CTDSP1-201ENST00000273062 SVEP1Q4LDE5 3571 aa11.99□□□□□ -0.49
CTDSP1-201ENST00000273062 TRBV7-7A0A0K0K1E9 115 aa11.99□□□□□ -0.49
CTDSP1-201ENST00000273062 CD3EP07766 207 aa11.99□□□□□ -0.49
CTDSP1-201ENST00000273062 PVRIGQ6DKI7 326 aa11.99□□□□□ -0.49
CTDSP1-201ENST00000273062 C3orf22Q8N5N4 141 aa11.99□□□□□ -0.49
CTDSP1-201ENST00000273062 C11orf86A6NJI1 115 aa11.99□□□□□ -0.49
CTDSP1-201ENST00000273062 EBI3Q14213 229 aa11.99□□□□□ -0.49
CTDSP1-201ENST00000273062 LYPD1Q8N2G4 141 aa11.99□□□□□ -0.49
CTDSP1-201ENST00000273062 CFHR4Q92496 578 aa11.98□□□□□ -0.49
CTDSP1-201ENST00000273062 LY6DQ14210 128 aa11.98□□□□□ -0.49
CTDSP1-201ENST00000273062 TMEM263Q8WUH6 116 aaKnown RBP11.98□□□□□ -0.49
CTDSP1-201ENST00000273062 CYSTM1Q9H1C7 97 aa11.98□□□□□ -0.49
CTDSP1-201ENST00000273062 HRNRQ86YZ3 2850 aaPredicted RBP11.98□□□□□ -0.49
CTDSP1-201ENST00000273062 CCL21O00585 134 aa11.97□□□□□ -0.49
CTDSP1-201ENST00000273062 LOXP28300 417 aaPredicted RBP11.97□□□□□ -0.49
CTDSP1-201ENST00000273062 LRRC75A-AS1Q8N1F1 130 aa11.97□□□□□ -0.49
CTDSP1-201ENST00000273062 SLC25A29Q8N8R3 303 aa11.97□□□□□ -0.49
CTDSP1-201ENST00000273062 C11orf21Q9P2W6 132 aa11.97□□□□□ -0.49
CTDSP1-201ENST00000273062 TRBV10-2A0A0K0K1G8 114 aa11.97□□□□□ -0.49
CTDSP1-201ENST00000273062 NDUFB3O43676 98 aa11.97□□□□□ -0.49
CTDSP1-201ENST00000273062 ENSAO43768 121 aaKnown RBP11.97□□□□□ -0.49
CTDSP1-201ENST00000273062 ERCC8Q13216 396 aa11.97□□□□□ -0.49
CTDSP1-201ENST00000273062 Q1RN00 199 aa11.97□□□□□ -0.49
CTDSP1-201ENST00000273062 ZNF491Q8N8L2 437 aa11.97□□□□□ -0.49
CTDSP1-201ENST00000273062 TOMM6Q96B49 74 aa11.97□□□□□ -0.49
CTDSP1-201ENST00000273062 SPRY2O43597 315 aa11.96□□□□□ -0.49
CTDSP1-201ENST00000273062 CRYGDP07320 174 aa11.96□□□□□ -0.49
CTDSP1-201ENST00000273062 HERVK_113P61574 105 aa11.96□□□□□ -0.49
CTDSP1-201ENST00000273062 ATXN8Q156A1 80 aa11.96□□□□□ -0.49
CTDSP1-201ENST00000273062 COX8CQ7Z4L0 72 aa11.96□□□□□ -0.49
CTDSP1-201ENST00000273062 SMIM2Q9BVW6 85 aa11.96□□□□□ -0.49
CTDSP1-201ENST00000273062 LY6HO94772 140 aa11.96□□□□□ -0.5
CTDSP1-201ENST00000273062 RPL27AP46776 148 aaKnown RBP11.96□□□□□ -0.5
CTDSP1-201ENST00000273062 PLGLAQ15195 96 aa11.96□□□□□ -0.5
CTDSP1-201ENST00000273062 C2orf82Q6UX34 121 aa11.96□□□□□ -0.5
CTDSP1-201ENST00000273062 LINC00527Q9UJ94 153 aa11.96□□□□□ -0.5
CTDSP1-201ENST00000273062 IGKV3D-20A0A0C4DH25 116 aa11.95□□□□□ -0.5
CTDSP1-201ENST00000273062 I3L2K1 104 aa11.95□□□□□ -0.5
CTDSP1-201ENST00000273062 RNF125Q96EQ8 232 aa11.95□□□□□ -0.5
CTDSP1-201ENST00000273062 AMELXQ99217 191 aa11.95□□□□□ -0.5
CTDSP1-201ENST00000273062 H7C423 109 aa11.95□□□□□ -0.5
CTDSP1-201ENST00000273062 TRIAP1O43715 76 aa11.95□□□□□ -0.5
CTDSP1-201ENST00000273062 IGLV4-69A0A075B6H9 119 aa11.94□□□□□ -0.5
CTDSP1-201ENST00000273062 P0DMU3 169 aa11.94□□□□□ -0.5
CTDSP1-201ENST00000273062 FAM231AP0DMU4 169 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 210.3 ms