RNA–Protein interactions for RNA: ENST00000264039.6

GPC1-201, Transcript of glypican 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC1, Length 3,713 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-201ENST00000264039 RNASE13Q5GAN3 156 aaKnown RBP12.59□□□□□ -0.39
GPC1-201ENST00000264039 LINC01560Q8TB33 94 aa12.59□□□□□ -0.39
GPC1-201ENST00000264039 CARD19Q96LW7 228 aa12.59□□□□□ -0.39
GPC1-201ENST00000264039 J3QQQ9 107 aa12.58□□□□□ -0.4
GPC1-201ENST00000264039 IGLC6P0CF74 106 aa12.58□□□□□ -0.4
GPC1-201ENST00000264039 C9orf153Q5TBE3 101 aa12.58□□□□□ -0.4
GPC1-201ENST00000264039 BAALCQ8WXS3 180 aa12.58□□□□□ -0.4
GPC1-201ENST00000264039 ZNF625Q96I27 306 aaPredicted RBP12.58□□□□□ -0.4
GPC1-201ENST00000264039 LINC00477Q96M19 166 aa12.58□□□□□ -0.4
GPC1-201ENST00000264039 CD7P09564 240 aa12.58□□□□□ -0.4
GPC1-201ENST00000264039 CFC1BP0CG36 223 aa12.58□□□□□ -0.4
GPC1-201ENST00000264039 CFC1P0CG37 223 aa12.58□□□□□ -0.4
GPC1-201ENST00000264039 OPRPNQ99935 248 aaPredicted RBP12.58□□□□□ -0.4
GPC1-201ENST00000264039 F6UB75 175 aa12.58□□□□□ -0.4
GPC1-201ENST00000264039 Q6ZS46 218 aa12.58□□□□□ -0.4
GPC1-201ENST00000264039 GNRH2O43555 120 aa12.57□□□□□ -0.4
GPC1-201ENST00000264039 CD3EP07766 207 aa12.57□□□□□ -0.4
GPC1-201ENST00000264039 Q8N1Y9 231 aa12.57□□□□□ -0.4
GPC1-201ENST00000264039 DKK4Q9UBT3 224 aa12.57□□□□□ -0.4
GPC1-201ENST00000264039 IGHV3-73A0A0B4J1V6 119 aa12.57□□□□□ -0.4
GPC1-201ENST00000264039 CRLF1O75462 422 aa12.57□□□□□ -0.4
GPC1-201ENST00000264039 DGAT2L7PQ6IED9 249 aa12.57□□□□□ -0.4
GPC1-201ENST00000264039 ADGRG4Q8IZF6 3080 aa12.57□□□□□ -0.4
GPC1-201ENST00000264039 SLC50A1Q9BRV3 221 aa12.57□□□□□ -0.4
GPC1-201ENST00000264039 CEP192Q8TEP8 1941 aa12.56□□□□□ -0.4
GPC1-201ENST00000264039 IGHG3P01860 377 aa12.56□□□□□ -0.4
GPC1-201ENST00000264039 PMVKQ15126 192 aa12.56□□□□□ -0.4
GPC1-201ENST00000264039 EDA2RQ9HAV5 297 aa12.56□□□□□ -0.4
GPC1-201ENST00000264039 PTPRQQ9UMZ3 2332 aa12.56□□□□□ -0.4
GPC1-201ENST00000264039 G3V318 75 aa12.56□□□□□ -0.4
GPC1-201ENST00000264039 FAM57AQ8TBR7 257 aa12.56□□□□□ -0.4
GPC1-201ENST00000264039 INS-IGF2F8WCM5 200 aa12.55□□□□□ -0.4
GPC1-201ENST00000264039 SPRY4Q9C004 299 aa12.55□□□□□ -0.4
GPC1-201ENST00000264039 PRO0461Q9UI25 63 aa12.55□□□□□ -0.4
GPC1-201ENST00000264039 IGF1P05019 195 aa12.55□□□□□ -0.4
GPC1-201ENST00000264039 FHL3Q13643 280 aa12.55□□□□□ -0.4
GPC1-201ENST00000264039 ATP6V0E2Q8NHE4 81 aa12.55□□□□□ -0.4
GPC1-201ENST00000264039 RBAKDNA6NC62 111 aa12.55□□□□□ -0.4
GPC1-201ENST00000264039 PAPPA-AS1Q5QFB9 102 aa12.55□□□□□ -0.4
GPC1-201ENST00000264039 MUSTN1Q8IVN3 82 aa12.55□□□□□ -0.4
GPC1-201ENST00000264039 AJUBAQ96IF1 538 aa12.55□□□□□ -0.4
GPC1-201ENST00000264039 M0R2P5 195 aa12.54□□□□□ -0.4
GPC1-201ENST00000264039 C11orf21Q9P2W6 132 aa12.54□□□□□ -0.4
GPC1-201ENST00000264039 TECTAO75443 2155 aa12.54□□□□□ -0.4
GPC1-201ENST00000264039 FCN3O75636 299 aa12.54□□□□□ -0.4
GPC1-201ENST00000264039 TRAV21A0A0B4J279 112 aa12.54□□□□□ -0.4
GPC1-201ENST00000264039 TNRC6BQ9UPQ9 1833 aaKnown RBP12.54□□□□□ -0.4
GPC1-201ENST00000264039 JPT2Q9H910 190 aa12.53□□□□□ -0.4
GPC1-201ENST00000264039 ATMQ13315 3056 aa12.53□□□□□ -0.4
GPC1-201ENST00000264039 LINC01620Q4KN68 170 aa12.53□□□□□ -0.4
GPC1-201ENST00000264039 LINC00311Q8N616 119 aa12.53□□□□□ -0.4
GPC1-201ENST00000264039 FAM236AA0A1B0GUQ0 79 aa12.52□□□□□ -0.4
GPC1-201ENST00000264039 FAM236BA0A1B0GV22 79 aa12.52□□□□□ -0.4
GPC1-201ENST00000264039 SDHAF1A6NFY7 115 aa12.52□□□□□ -0.4
GPC1-201ENST00000264039 CTSGP08311 255 aa12.52□□□□□ -0.41
GPC1-201ENST00000264039 SEM1Q6ZVN7 128 aa12.52□□□□□ -0.41
GPC1-201ENST00000264039 CLEC2BQ92478 149 aa12.52□□□□□ -0.41
GPC1-201ENST00000264039 RASL10AQ92737 203 aa12.52□□□□□ -0.41
GPC1-201ENST00000264039 DUX5Q96PT3 197 aa12.52□□□□□ -0.41
GPC1-201ENST00000264039 TMEM219Q86XT9 240 aa12.51□□□□□ -0.41
GPC1-201ENST00000264039 DAND5Q8N907 189 aa12.51□□□□□ -0.41
GPC1-201ENST00000264039 ZFHX4Q86UP3 3567 aa12.51□□□□□ -0.41
GPC1-201ENST00000264039 PF4V1P10720 104 aa12.51□□□□□ -0.41
GPC1-201ENST00000264039 A0A0J9YY99 117 aa12.5□□□□□ -0.41
GPC1-201ENST00000264039 ZMAT4Q9H898 229 aa12.5□□□□□ -0.41
GPC1-201ENST00000264039 FAM215AQ9Y5M1 114 aa12.5□□□□□ -0.41
GPC1-201ENST00000264039 ZNF876PQ49A33 203 aa12.5□□□□□ -0.41
GPC1-201ENST00000264039 ANKRD11Q6UB99 2663 aaPredicted RBP12.49□□□□□ -0.41
GPC1-201ENST00000264039 MBD3L4A6NDZ8 208 aaPredicted RBP12.49□□□□□ -0.41
GPC1-201ENST00000264039 MBD3L3A6NE82 208 aaPredicted RBP12.49□□□□□ -0.41
GPC1-201ENST00000264039 MBD3L5A6NJ08 208 aaPredicted RBP12.49□□□□□ -0.41
GPC1-201ENST00000264039 MBD3L2Q8NHZ7 208 aaPredicted RBP12.49□□□□□ -0.41
GPC1-201ENST00000264039 FANCD2OSQ96PS1 177 aa12.49□□□□□ -0.41
GPC1-201ENST00000264039 CD28P10747 220 aa12.49□□□□□ -0.41
GPC1-201ENST00000264039 LY6EQ16553 131 aa12.49□□□□□ -0.41
GPC1-201ENST00000264039 YAE1D1Q9NRH1 226 aa12.49□□□□□ -0.41
GPC1-201ENST00000264039 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.49□□□□□ -0.41
GPC1-201ENST00000264039 TRBV6-1A0A0K0K1D8 114 aa12.49□□□□□ -0.41
GPC1-201ENST00000264039 ID1P41134 155 aa12.49□□□□□ -0.41
GPC1-201ENST00000264039 A0A0J9YXV3 536 aa12.48□□□□□ -0.41
GPC1-201ENST00000264039 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.48□□□□□ -0.41
GPC1-201ENST00000264039 NRACQ8N912 160 aa12.48□□□□□ -0.41
GPC1-201ENST00000264039 GATD1Q8NB37 220 aa12.48□□□□□ -0.41
GPC1-201ENST00000264039 EEF1AKMT3Q96AZ1 226 aa12.48□□□□□ -0.41
GPC1-201ENST00000264039 TMEM101Q96IK0 257 aa12.48□□□□□ -0.41
GPC1-201ENST00000264039 VCYO14598 125 aa12.48□□□□□ -0.41
GPC1-201ENST00000264039 NEXN-AS1Q8NBZ9 246 aa12.48□□□□□ -0.41
GPC1-201ENST00000264039 SMAD5-AS1Q9Y6J3 95 aa12.47□□□□□ -0.41
GPC1-201ENST00000264039 TLN2Q9Y4G6 2542 aa12.47□□□□□ -0.41
GPC1-201ENST00000264039 RHODO00212 210 aa12.47□□□□□ -0.41
GPC1-201ENST00000264039 PPP1R17O96001 155 aa12.47□□□□□ -0.41
GPC1-201ENST00000264039 TOMM6Q96B49 74 aa12.47□□□□□ -0.41
GPC1-201ENST00000264039 E7EQL1 145 aa12.47□□□□□ -0.41
GPC1-201ENST00000264039 MRPS12O15235 138 aaKnown RBP12.47□□□□□ -0.41
GPC1-201ENST00000264039 IGLV1-47P01700 117 aa12.46□□□□□ -0.41
GPC1-201ENST00000264039 CD59P13987 128 aa12.46□□□□□ -0.41
GPC1-201ENST00000264039 TRGV11A0A075B6L2 103 aa12.46□□□□□ -0.41
GPC1-201ENST00000264039 TRAV12-1A0A0B4J245 112 aa12.46□□□□□ -0.41
GPC1-201ENST00000264039 IGKV3OR2-268A0A0C4DH90 116 aa12.46□□□□□ -0.41
GPC1-201ENST00000264039 PIFOQ8TCI5 191 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms