RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 CRYGCP07315 174 aa10.57□□□□□ -0.72
SF3A1-201ENST00000215793 ANKHD1Q8IWZ3 2542 aaKnown RBP10.57□□□□□ -0.72
SF3A1-201ENST00000215793 IGKV2D-24A0A075B6R9 120 aa10.57□□□□□ -0.72
SF3A1-201ENST00000215793 NTN5Q8WTR8 489 aaPredicted RBP10.57□□□□□ -0.72
SF3A1-201ENST00000215793 NLRC5Q86WI3 1866 aa10.57□□□□□ -0.72
SF3A1-201ENST00000215793 TEX48A0A1B0GUV7 120 aa10.57□□□□□ -0.72
SF3A1-201ENST00000215793 LYPD6Q86Y78 171 aa10.57□□□□□ -0.72
SF3A1-201ENST00000215793 ANKRD29Q8N6D5 301 aa10.57□□□□□ -0.72
SF3A1-201ENST00000215793 A0A0J9YY99 117 aa10.56□□□□□ -0.72
SF3A1-201ENST00000215793 DEFB113Q30KQ7 82 aa10.56□□□□□ -0.72
SF3A1-201ENST00000215793 KIAA1671Q9BY89 1806 aa10.56□□□□□ -0.72
SF3A1-201ENST00000215793 PATE2Q6UY27 113 aa10.56□□□□□ -0.72
SF3A1-201ENST00000215793 DEFB136Q30KP8 78 aa10.56□□□□□ -0.72
SF3A1-201ENST00000215793 C16orf54Q6UWD8 224 aa10.56□□□□□ -0.72
SF3A1-201ENST00000215793 C1orf43Q9BWL3 253 aa10.56□□□□□ -0.72
SF3A1-201ENST00000215793 SPRNQ5BIV9 151 aa10.56□□□□□ -0.72
SF3A1-201ENST00000215793 C9orf66Q5T8R8 295 aa10.56□□□□□ -0.72
SF3A1-201ENST00000215793 PCP2Q8IVA1 136 aa10.56□□□□□ -0.72
SF3A1-201ENST00000215793 IGKV1OR2-108A0A075B7D4 117 aa10.55□□□□□ -0.72
SF3A1-201ENST00000215793 GATA1P15976 413 aaPredicted RBP10.55□□□□□ -0.72
SF3A1-201ENST00000215793 MAJINQ3KP22 176 aa10.55□□□□□ -0.72
SF3A1-201ENST00000215793 SH2D6Q7Z4S9 175 aa10.55□□□□□ -0.72
SF3A1-201ENST00000215793 C16orf74Q96GX8 76 aa10.55□□□□□ -0.72
SF3A1-201ENST00000215793 TINCRA0A1B0GVN0 87 aa10.55□□□□□ -0.72
SF3A1-201ENST00000215793 BLCAPP62952 87 aa10.55□□□□□ -0.72
SF3A1-201ENST00000215793 PKIGQ9Y2B9 76 aa10.55□□□□□ -0.72
SF3A1-201ENST00000215793 SONP18583 2426 aaKnown RBP10.55□□□□□ -0.72
SF3A1-201ENST00000215793 KIR2DL5BA0A0G2JN68 375 aa10.55□□□□□ -0.72
SF3A1-201ENST00000215793 KIR2DL5BA0A0G2JPC4 375 aa10.55□□□□□ -0.72
SF3A1-201ENST00000215793 IGHV4-38-2P0DP08 117 aa10.55□□□□□ -0.72
SF3A1-201ENST00000215793 UBE2BP63146 152 aa10.55□□□□□ -0.72
SF3A1-201ENST00000215793 KIR2DL5AQ8N109 375 aa10.55□□□□□ -0.72
SF3A1-201ENST00000215793 DEFB125Q8N687 156 aa10.55□□□□□ -0.72
SF3A1-201ENST00000215793 ORMDL1Q9P0S3 153 aa10.55□□□□□ -0.72
SF3A1-201ENST00000215793 IGHV4-30-2A0A087WSY4 118 aa10.54□□□□□ -0.72
SF3A1-201ENST00000215793 MRPL23Q16540 153 aaKnown RBP10.54□□□□□ -0.72
SF3A1-201ENST00000215793 Q8N9W7 124 aa10.54□□□□□ -0.72
SF3A1-201ENST00000215793 MYLKQ15746 1914 aa10.54□□□□□ -0.72
SF3A1-201ENST00000215793 TRAV12-1A0A0B4J245 112 aa10.54□□□□□ -0.72
SF3A1-201ENST00000215793 DAZ2Q13117 558 aaKnown RBP10.54□□□□□ -0.72
SF3A1-201ENST00000215793 DAZ4Q86SG3 579 aaKnown RBP10.54□□□□□ -0.72
SF3A1-201ENST00000215793 DAZ3Q9NR90 486 aaKnown RBP10.54□□□□□ -0.72
SF3A1-201ENST00000215793 SLURP1P55000 103 aa10.54□□□□□ -0.72
SF3A1-201ENST00000215793 Q6ZVH6 145 aa10.54□□□□□ -0.72
SF3A1-201ENST00000215793 C5orf38Q86SI9 138 aa10.54□□□□□ -0.72
SF3A1-201ENST00000215793 APRG1Q8IVJ8 170 aa10.54□□□□□ -0.72
SF3A1-201ENST00000215793 CITED1Q99966 193 aa10.54□□□□□ -0.72
SF3A1-201ENST00000215793 KLF2Q9Y5W3 355 aaPredicted RBP10.54□□□□□ -0.72
SF3A1-201ENST00000215793 BAALC-AS2P0C853 105 aa10.53□□□□□ -0.72
SF3A1-201ENST00000215793 ATP6V0E2Q8NHE4 81 aa10.53□□□□□ -0.72
SF3A1-201ENST00000215793 PIFOQ8TCI5 191 aa10.53□□□□□ -0.72
SF3A1-201ENST00000215793 NOTCH4Q99466 2003 aa10.53□□□□□ -0.72
SF3A1-201ENST00000215793 NACAE9PAV3 2078 aa10.53□□□□□ -0.72
SF3A1-201ENST00000215793 ATP5G1P05496 136 aa10.53□□□□□ -0.72
SF3A1-201ENST00000215793 ZFP2Q6ZN57 461 aa10.53□□□□□ -0.72
SF3A1-201ENST00000215793 C10orf105Q8TEF2 133 aa10.53□□□□□ -0.72
SF3A1-201ENST00000215793 RPL39LQ96EH5 51 aaKnown RBP10.53□□□□□ -0.72
SF3A1-201ENST00000215793 CSPG4Q6UVK1 2322 aa10.53□□□□□ -0.72
SF3A1-201ENST00000215793 MGAMO43451 1857 aa10.53□□□□□ -0.72
SF3A1-201ENST00000215793 K7EMT4 169 aa10.53□□□□□ -0.72
SF3A1-201ENST00000215793 SPART-AS1P0CW21 52 aa10.53□□□□□ -0.72
SF3A1-201ENST00000215793 CRYBA4P53673 196 aa10.53□□□□□ -0.72
SF3A1-201ENST00000215793 ANAPC1Q9H1A4 1944 aa10.52□□□□□ -0.72
SF3A1-201ENST00000215793 TRAV4A0A0B4J268 109 aa10.52□□□□□ -0.72
SF3A1-201ENST00000215793 H0YGX0 51 aa10.52□□□□□ -0.72
SF3A1-201ENST00000215793 Q6ZQT7 251 aa10.52□□□□□ -0.72
SF3A1-201ENST00000215793 FAM167A-AS1Q96KT0 104 aa10.52□□□□□ -0.72
SF3A1-201ENST00000215793 CHD3Q12873 2000 aaKnown RBP10.52□□□□□ -0.72
SF3A1-201ENST00000215793 K7EQD1 137 aa10.52□□□□□ -0.73
SF3A1-201ENST00000215793 IGLV1-47P01700 117 aa10.52□□□□□ -0.73
SF3A1-201ENST00000215793 ACYP1P07311 99 aa10.52□□□□□ -0.73
SF3A1-201ENST00000215793 C5orf56Q8N8D9 126 aa10.52□□□□□ -0.73
SF3A1-201ENST00000215793 CUL9Q8IWT3 2517 aa10.52□□□□□ -0.73
SF3A1-201ENST00000215793 MYO18BQ8IUG5 2567 aa10.52□□□□□ -0.73
SF3A1-201ENST00000215793 hADV29S1A0JD25 119 aa10.52□□□□□ -0.73
SF3A1-201ENST00000215793 TRACP01848 142 aa10.52□□□□□ -0.73
SF3A1-201ENST00000215793 C15orf53Q8NAA6 179 aa10.52□□□□□ -0.73
SF3A1-201ENST00000215793 MSRB1Q9NZV6 116 aa10.52□□□□□ -0.73
SF3A1-201ENST00000215793 CCL25O15444 150 aa10.51□□□□□ -0.73
SF3A1-201ENST00000215793 GYPEP15421 78 aa10.51□□□□□ -0.73
SF3A1-201ENST00000215793 A0A0J9YXV3 536 aa10.51□□□□□ -0.73
SF3A1-201ENST00000215793 WI2-2373I1.2A0A1W2PRP0 233 aa10.51□□□□□ -0.73
SF3A1-201ENST00000215793 SPRY2O43597 315 aa10.51□□□□□ -0.73
SF3A1-201ENST00000215793 RITA1Q96K30 269 aa10.51□□□□□ -0.73
SF3A1-201ENST00000215793 ICOSQ9Y6W8 199 aa10.51□□□□□ -0.73
SF3A1-201ENST00000215793 C9orf47Q6ZRZ4 202 aa10.5□□□□□ -0.73
SF3A1-201ENST00000215793 SPANXCQ9NY87 97 aa10.5□□□□□ -0.73
SF3A1-201ENST00000215793 HIVEP2P31629 2446 aa10.5□□□□□ -0.73
SF3A1-201ENST00000215793 TMEM89A2RUT3 159 aa10.5□□□□□ -0.73
SF3A1-201ENST00000215793 DAZAP2Q15038 168 aaPredicted RBP10.5□□□□□ -0.73
SF3A1-201ENST00000215793 CAMK2N2Q96S95 79 aa10.5□□□□□ -0.73
SF3A1-201ENST00000215793 Q9HAA7 133 aa10.5□□□□□ -0.73
SF3A1-201ENST00000215793 MED14OSP0DP75 135 aa10.5□□□□□ -0.73
SF3A1-201ENST00000215793 COX7A2LO14548 114 aa10.49□□□□□ -0.73
SF3A1-201ENST00000215793 SND1-IT1Q9HBX3 110 aa10.49□□□□□ -0.73
SF3A1-201ENST00000215793 ETDCA0A1B0GVM5 59 aa10.49□□□□□ -0.73
SF3A1-201ENST00000215793 TEX22C9J3V5 150 aa10.49□□□□□ -0.73
SF3A1-201ENST00000215793 FUSP35637 526 aaKnown RBP eCLIP10.49□□□□□ -0.73
SF3A1-201ENST00000215793 GPHB5Q86YW7 130 aa10.49□□□□□ -0.73
SF3A1-201ENST00000215793 IGLL5B9A064 214 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 104.1 ms