RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 K7EQD1 137 aa7.04□□□□□ -1.28
SCN1A-222ENST00000642141 GCHFRP30047 84 aa7.04□□□□□ -1.28
SCN1A-222ENST00000642141 MRPL23Q16540 153 aaKnown RBP7.04□□□□□ -1.28
SCN1A-222ENST00000642141 NEGR1Q7Z3B1 354 aa7.04□□□□□ -1.28
SCN1A-222ENST00000642141 OR4C5Q8NGB2 326 aa7.04□□□□□ -1.28
SCN1A-222ENST00000642141 RASL10AQ92737 203 aa7.04□□□□□ -1.28
SCN1A-222ENST00000642141 LENEPQ9Y5L5 61 aa7.04□□□□□ -1.28
SCN1A-222ENST00000642141 MUC4Q99102 2169 aa7.03□□□□□ -1.28
SCN1A-222ENST00000642141 FXYD6-FXYD2A0A087WZ82 144 aa7.03□□□□□ -1.28
SCN1A-222ENST00000642141 TRAV21A0A0B4J279 112 aa7.03□□□□□ -1.28
SCN1A-222ENST00000642141 TYMSP04818 313 aa7.03□□□□□ -1.28
SCN1A-222ENST00000642141 ZNF80P51504 273 aaPredicted RBP7.03□□□□□ -1.28
SCN1A-222ENST00000642141 SUMO1P63165 101 aaKnown RBP7.03□□□□□ -1.28
SCN1A-222ENST00000642141 SLAQ13239 276 aa7.03□□□□□ -1.28
SCN1A-222ENST00000642141 ZFP69Q49AA0 526 aa7.03□□□□□ -1.28
SCN1A-222ENST00000642141 PRNTQ86SH4 94 aa7.03□□□□□ -1.28
SCN1A-222ENST00000642141 TCTE3Q8IZS6 198 aa7.03□□□□□ -1.28
SCN1A-222ENST00000642141 TMEM75Q8N9X5 138 aa7.03□□□□□ -1.28
SCN1A-222ENST00000642141 PCNPQ8WW12 178 aaKnown RBP7.03□□□□□ -1.28
SCN1A-222ENST00000642141 TMED6Q8WW62 240 aa7.03□□□□□ -1.28
SCN1A-222ENST00000642141 ASB13Q8WXK3 278 aa7.03□□□□□ -1.28
SCN1A-222ENST00000642141 AQP10Q96PS8 301 aa7.03□□□□□ -1.28
SCN1A-222ENST00000642141 SPXQ9BT56 116 aa7.03□□□□□ -1.28
SCN1A-222ENST00000642141 SDF2L1Q9HCN8 221 aa7.03□□□□□ -1.28
SCN1A-222ENST00000642141 C11orf21Q9P2W6 132 aa7.03□□□□□ -1.28
SCN1A-222ENST00000642141 ABCA13Q86UQ4 5058 aa7.03□□□□□ -1.28
SCN1A-222ENST00000642141 HSPG2P98160 4391 aa7.03□□□□□ -1.28
SCN1A-222ENST00000642141 IGHV3-73A0A0B4J1V6 119 aa7.02□□□□□ -1.29
SCN1A-222ENST00000642141 A0A1W2PPQ1 181 aa7.02□□□□□ -1.29
SCN1A-222ENST00000642141 M0R2P5 195 aa7.02□□□□□ -1.29
SCN1A-222ENST00000642141 TCRAP04437 139 aa7.02□□□□□ -1.29
SCN1A-222ENST00000642141 STAG3L2P0CL84 134 aa7.02□□□□□ -1.29
SCN1A-222ENST00000642141 STAG3L3P0CL85 134 aa7.02□□□□□ -1.29
SCN1A-222ENST00000642141 SRIP30626 198 aa7.02□□□□□ -1.29
SCN1A-222ENST00000642141 RPL7L1Q6DKI1 246 aaKnown RBP7.02□□□□□ -1.29
SCN1A-222ENST00000642141 WFDC10BQ8IUB3 73 aa7.02□□□□□ -1.29
SCN1A-222ENST00000642141 MAPKAPK5-AS1Q8N8E1 139 aa7.02□□□□□ -1.29
SCN1A-222ENST00000642141 INO80EQ8NBZ0 244 aaPredicted RBP7.02□□□□□ -1.29
SCN1A-222ENST00000642141 OR2G3Q8NGZ4 309 aa7.02□□□□□ -1.29
SCN1A-222ENST00000642141 LINC00479Q96M42 142 aa7.02□□□□□ -1.29
SCN1A-222ENST00000642141 ACTR3CQ9C0K3 210 aaPredicted RBP7.02□□□□□ -1.29
SCN1A-222ENST00000642141 TRAV4A0A0B4J268 109 aa7.01□□□□□ -1.29
SCN1A-222ENST00000642141 TRAV34A0A0B4J273 112 aa7.01□□□□□ -1.29
SCN1A-222ENST00000642141 GGTLC3B5MD39 225 aa7.01□□□□□ -1.29
SCN1A-222ENST00000642141 CXorf1O96002 111 aa7.01□□□□□ -1.29
SCN1A-222ENST00000642141 GCGP01275 180 aa7.01□□□□□ -1.29
SCN1A-222ENST00000642141 UBE2G2P60604 165 aa7.01□□□□□ -1.29
SCN1A-222ENST00000642141 TDRG1Q3Y452 100 aa7.01□□□□□ -1.29
SCN1A-222ENST00000642141 C5orf17Q8NAS9 161 aa7.01□□□□□ -1.29
SCN1A-222ENST00000642141 NHLRC2Q8NBF2 726 aa7.01□□□□□ -1.29
SCN1A-222ENST00000642141 NDFIP1Q9BT67 221 aa7.01□□□□□ -1.29
SCN1A-222ENST00000642141 PSMG3Q9BT73 122 aaPredicted RBP7.01□□□□□ -1.29
SCN1A-222ENST00000642141 EPDR1Q9UM22 224 aa7.01□□□□□ -1.29
SCN1A-222ENST00000642141 PSG8Q9UQ74 426 aa7.01□□□□□ -1.29
SCN1A-222ENST00000642141 LRP1BQ9NZR2 4599 aa7□□□□□ -1.29
SCN1A-222ENST00000642141 K7EQM0 130 aa7□□□□□ -1.29
SCN1A-222ENST00000642141 IFNA7P01567 189 aa7□□□□□ -1.29
SCN1A-222ENST00000642141 IGLV2-11P01706 119 aa7□□□□□ -1.29
SCN1A-222ENST00000642141 MBP02144 154 aa7□□□□□ -1.29
SCN1A-222ENST00000642141 GIPP09681 153 aaPredicted RBP7□□□□□ -1.29
SCN1A-222ENST00000642141 FGF8P55075 233 aaPredicted RBP7□□□□□ -1.29
SCN1A-222ENST00000642141 FLI1Q01543 452 aaPredicted RBP7□□□□□ -1.29
SCN1A-222ENST00000642141 ZNF726P1Q15940 193 aa7□□□□□ -1.29
SCN1A-222ENST00000642141 ZNF876PQ49A33 203 aa7□□□□□ -1.29
SCN1A-222ENST00000642141 Q6ZRN7 208 aaPredicted RBP7□□□□□ -1.29
SCN1A-222ENST00000642141 LY96Q9Y6Y9 160 aa7□□□□□ -1.29
SCN1A-222ENST00000642141 BORCS7-ASMTA0A0B4J1R7 106 aa6.99□□□□□ -1.29
SCN1A-222ENST00000642141 RNF222A6NCQ9 220 aa6.99□□□□□ -1.29
SCN1A-222ENST00000642141 SMLR1H3BR10 107 aa6.99□□□□□ -1.29
SCN1A-222ENST00000642141 TAAR5O14804 337 aa6.99□□□□□ -1.29
SCN1A-222ENST00000642141 C1QBP02746 253 aa6.99□□□□□ -1.29
SCN1A-222ENST00000642141 ORM1P02763 201 aa6.99□□□□□ -1.29
SCN1A-222ENST00000642141 DNAH10OSP0CZ25 163 aa6.99□□□□□ -1.29
SCN1A-222ENST00000642141 SERF2P84101 59 aa6.99□□□□□ -1.29
SCN1A-222ENST00000642141 DPPA3Q6W0C5 159 aa6.99□□□□□ -1.29
SCN1A-222ENST00000642141 ARL6IP6Q8N6S5 226 aa6.99□□□□□ -1.29
SCN1A-222ENST00000642141 OR2T35Q8NGX2 323 aa6.99□□□□□ -1.29
SCN1A-222ENST00000642141 SUN5Q8TC36 379 aa6.99□□□□□ -1.29
SCN1A-222ENST00000642141 KCNS1Q96KK3 526 aa6.99□□□□□ -1.29
SCN1A-222ENST00000642141 TMEM167BQ9NRX6 74 aa6.99□□□□□ -1.29
SCN1A-222ENST00000642141 TNFSF18Q9UNG2 199 aa6.99□□□□□ -1.29
SCN1A-222ENST00000642141 TRAV9-2A0A087WT02 112 aa6.98□□□□□ -1.29
SCN1A-222ENST00000642141 PGPEP1LA6NFU8 196 aa6.98□□□□□ -1.29
SCN1A-222ENST00000642141 FBLL1A6NHQ2 334 aaKnown RBP6.98□□□□□ -1.29
SCN1A-222ENST00000642141 CDK2AP2O75956 126 aa6.98□□□□□ -1.29
SCN1A-222ENST00000642141 BTF3P20290 206 aaKnown RBP6.98□□□□□ -1.29
SCN1A-222ENST00000642141 EVI2AP22794 236 aa6.98□□□□□ -1.29
SCN1A-222ENST00000642141 SMUG1Q53HV7 270 aa6.98□□□□□ -1.29
SCN1A-222ENST00000642141 CFAP126Q5VTH2 177 aa6.98□□□□□ -1.29
SCN1A-222ENST00000642141 CYB561D1Q8N8Q1 229 aa6.98□□□□□ -1.29
SCN1A-222ENST00000642141 SLC25A29Q8N8R3 303 aa6.98□□□□□ -1.29
SCN1A-222ENST00000642141 TXNDC17Q9BRA2 123 aa6.98□□□□□ -1.29
SCN1A-222ENST00000642141 SERTM2A0A1B0GWG4 89 aa6.97□□□□□ -1.29
SCN1A-222ENST00000642141 ARPC5O15511 151 aa6.97□□□□□ -1.29
SCN1A-222ENST00000642141 CRYGDP07320 174 aa6.97□□□□□ -1.29
SCN1A-222ENST00000642141 PFN1P07737 140 aaKnown RBP6.97□□□□□ -1.29
SCN1A-222ENST00000642141 GATA1P15976 413 aaPredicted RBP6.97□□□□□ -1.29
SCN1A-222ENST00000642141 PPT1P50897 306 aa6.97□□□□□ -1.29
SCN1A-222ENST00000642141 ZNF506Q5JVG8 444 aa6.97□□□□□ -1.29
SCN1A-222ENST00000642141 Q6ZSN1 163 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms