RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 TRBV20OR9-2A0A075B6H5 130 aa9.49□□□□□ -0.89
LINC00540-202ENST00000616974 TRGV1A0A0A0MS02 117 aa9.49□□□□□ -0.89
LINC00540-202ENST00000616974 LCE6AA0A183 80 aa9.49□□□□□ -0.89
LINC00540-202ENST00000616974 SNURFLB1AK76 121 aa9.49□□□□□ -0.89
LINC00540-202ENST00000616974 K7EQM0 130 aa9.49□□□□□ -0.89
LINC00540-202ENST00000616974 IGHV3-53P01767 116 aa9.49□□□□□ -0.89
LINC00540-202ENST00000616974 AKR1C3P42330 323 aa9.49□□□□□ -0.89
LINC00540-202ENST00000616974 TCL1AP56279 114 aa9.49□□□□□ -0.89
LINC00540-202ENST00000616974 LINC00467Q9BRT7 94 aa9.49□□□□□ -0.89
LINC00540-202ENST00000616974 SERTM2A0A1B0GWG4 89 aa9.48□□□□□ -0.89
LINC00540-202ENST00000616974 M0R036 132 aa9.48□□□□□ -0.89
LINC00540-202ENST00000616974 LTAP01374 205 aa9.48□□□□□ -0.89
LINC00540-202ENST00000616974 PFN1P07737 140 aaKnown RBP9.48□□□□□ -0.89
LINC00540-202ENST00000616974 TMEM88Q6PEY1 159 aa9.48□□□□□ -0.89
LINC00540-202ENST00000616974 FAM159AQ6UWV7 190 aa9.48□□□□□ -0.89
LINC00540-202ENST00000616974 NKX6-2Q9C056 277 aaPredicted RBP9.48□□□□□ -0.89
LINC00540-202ENST00000616974 TRAV21A0A0B4J279 112 aa9.47□□□□□ -0.89
LINC00540-202ENST00000616974 IGHV3-16A0A0C4DH30 117 aa9.47□□□□□ -0.89
LINC00540-202ENST00000616974 RAB19A4D1S5 217 aa9.47□□□□□ -0.89
LINC00540-202ENST00000616974 SFTA3P0C7M3 94 aa9.47□□□□□ -0.89
LINC00540-202ENST00000616974 RPL35P42766 123 aaKnown RBP9.47□□□□□ -0.89
LINC00540-202ENST00000616974 SMUG1Q53HV7 270 aa9.47□□□□□ -0.89
LINC00540-202ENST00000616974 LINC00476Q8WZB0 136 aa9.47□□□□□ -0.89
LINC00540-202ENST00000616974 SPINK4O60575 86 aa9.47□□□□□ -0.89
LINC00540-202ENST00000616974 BCL2P10415 239 aa9.47□□□□□ -0.89
LINC00540-202ENST00000616974 UBE2G1P62253 170 aa9.47□□□□□ -0.89
LINC00540-202ENST00000616974 RPL19P84098 196 aaKnown RBP9.47□□□□□ -0.89
LINC00540-202ENST00000616974 MEF2BQ02080 365 aaPredicted RBP9.47□□□□□ -0.89
LINC00540-202ENST00000616974 DAZ2Q13117 558 aaKnown RBP9.47□□□□□ -0.89
LINC00540-202ENST00000616974 TDRG1Q3Y452 100 aa9.47□□□□□ -0.89
LINC00540-202ENST00000616974 NDFIP1Q9BT67 221 aa9.47□□□□□ -0.89
LINC00540-202ENST00000616974 TMSB15BA0A087X1C1 80 aa9.46□□□□□ -0.89
LINC00540-202ENST00000616974 F5H768 121 aa9.46□□□□□ -0.89
LINC00540-202ENST00000616974 SH2D1AO60880 128 aa9.46□□□□□ -0.89
LINC00540-202ENST00000616974 LY6G6CO95867 125 aa9.46□□□□□ -0.89
LINC00540-202ENST00000616974 POM121L12Q8N7R1 296 aa9.46□□□□□ -0.89
LINC00540-202ENST00000616974 LYPD6BQ8NI32 183 aa9.46□□□□□ -0.89
LINC00540-202ENST00000616974 FMC1Q96HJ9 113 aa9.46□□□□□ -0.89
LINC00540-202ENST00000616974 KLK5Q9Y337 293 aaPredicted RBP9.46□□□□□ -0.89
LINC00540-202ENST00000616974 A0A0J9YY99 117 aa9.46□□□□□ -0.9
LINC00540-202ENST00000616974 GRIFINA4D1Z8 144 aa9.46□□□□□ -0.9
LINC00540-202ENST00000616974 IGLV2-8P01709 118 aa9.46□□□□□ -0.9
LINC00540-202ENST00000616974 RNASE3P12724 160 aaKnown RBP9.46□□□□□ -0.9
LINC00540-202ENST00000616974 MANBALQ9NQG1 85 aa9.46□□□□□ -0.9
LINC00540-202ENST00000616974 FAT2Q9NYQ8 4349 aa9.46□□□□□ -0.9
LINC00540-202ENST00000616974 IBA57Q5T440 356 aaKnown RBP9.45□□□□□ -0.9
LINC00540-202ENST00000616974 TEX261Q6UWH6 196 aa9.45□□□□□ -0.9
LINC00540-202ENST00000616974 MLST8Q9BVC4 326 aa9.45□□□□□ -0.9
LINC00540-202ENST00000616974 OR5I1Q13606 314 aa9.44□□□□□ -0.9
LINC00540-202ENST00000616974 SAPCD1Q5SSQ6 148 aa9.44□□□□□ -0.9
LINC00540-202ENST00000616974 PRR27Q6MZM9 219 aa9.44□□□□□ -0.9
LINC00540-202ENST00000616974 C11orf52Q96A22 123 aa9.44□□□□□ -0.9
LINC00540-202ENST00000616974 ATP5G1P05496 136 aa9.44□□□□□ -0.9
LINC00540-202ENST00000616974 PPT1P50897 306 aa9.44□□□□□ -0.9
LINC00540-202ENST00000616974 ZNF674Q2M3X9 581 aa9.44□□□□□ -0.9
LINC00540-202ENST00000616974 ZNF479Q96JC4 524 aa9.44□□□□□ -0.9
LINC00540-202ENST00000616974 TRGV2A0A075B6R0 118 aa9.43□□□□□ -0.9
LINC00540-202ENST00000616974 TRAV26-1A0A087WT03 109 aa9.43□□□□□ -0.9
LINC00540-202ENST00000616974 SRSF3P84103 164 aaKnown RBP9.43□□□□□ -0.9
LINC00540-202ENST00000616974 ZNF415Q09FC8 603 aa9.43□□□□□ -0.9
LINC00540-202ENST00000616974 CENPWQ5EE01 88 aa9.43□□□□□ -0.9
LINC00540-202ENST00000616974 TOR2AQ5JU69 321 aa9.43□□□□□ -0.9
LINC00540-202ENST00000616974 COX8CQ7Z4L0 72 aa9.43□□□□□ -0.9
LINC00540-202ENST00000616974 BAGE2Q86Y30 109 aa9.43□□□□□ -0.9
LINC00540-202ENST00000616974 C9JCJ5 164 aa9.43□□□□□ -0.9
LINC00540-202ENST00000616974 ORM1P02763 201 aa9.43□□□□□ -0.9
LINC00540-202ENST00000616974 JPT2Q9H910 190 aa9.43□□□□□ -0.9
LINC00540-202ENST00000616974 SDF2L1Q9HCN8 221 aa9.43□□□□□ -0.9
LINC00540-202ENST00000616974 ZFP30Q9Y2G7 519 aa9.43□□□□□ -0.9
LINC00540-202ENST00000616974 TEX48A0A1B0GUV7 120 aa9.42□□□□□ -0.9
LINC00540-202ENST00000616974 VSIG2Q96IQ7 327 aa9.42□□□□□ -0.9
LINC00540-202ENST00000616974 MED9Q9NWA0 146 aa9.42□□□□□ -0.9
LINC00540-202ENST00000616974 VAX2Q9UIW0 290 aa9.42□□□□□ -0.9
LINC00540-202ENST00000616974 PKHD1P08F94 4074 aa9.41□□□□□ -0.9
LINC00540-202ENST00000616974 MUC21A0A0G2JKD1 596 aa9.41□□□□□ -0.9
LINC00540-202ENST00000616974 TRBV6-1A0A0K0K1D8 114 aa9.41□□□□□ -0.9
LINC00540-202ENST00000616974 MUC21A0A140T8X8 626 aa9.41□□□□□ -0.9
LINC00540-202ENST00000616974 RBFOX3A6NFN3 312 aa9.41□□□□□ -0.9
LINC00540-202ENST00000616974 FABP5P3A8MUU1 101 aa9.41□□□□□ -0.9
LINC00540-202ENST00000616974 KRBOX1C9JBD0 128 aa9.41□□□□□ -0.9
LINC00540-202ENST00000616974 C9JQL5 133 aa9.41□□□□□ -0.9
LINC00540-202ENST00000616974 H3BVH4 76 aa9.41□□□□□ -0.9
LINC00540-202ENST00000616974 FAM162BQ5T6X4 162 aa9.41□□□□□ -0.9
LINC00540-202ENST00000616974 TCEAL7Q9BRU2 100 aa9.41□□□□□ -0.9
LINC00540-202ENST00000616974 NDUFAF3Q9BU61 184 aa9.41□□□□□ -0.9
LINC00540-202ENST00000616974 TRGV11A0A075B6L2 103 aa9.41□□□□□ -0.9
LINC00540-202ENST00000616974 B4DEV8 164 aa9.41□□□□□ -0.9
LINC00540-202ENST00000616974 CEBPGP53567 150 aa9.41□□□□□ -0.9
LINC00540-202ENST00000616974 BLOC1S1P78537 153 aa9.41□□□□□ -0.9
LINC00540-202ENST00000616974 C9orf85Q96MD7 179 aa9.41□□□□□ -0.9
LINC00540-202ENST00000616974 IGHV3-73A0A0B4J1V6 119 aa9.4□□□□□ -0.9
LINC00540-202ENST00000616974 GZMBP10144 247 aa9.4□□□□□ -0.9
LINC00540-202ENST00000616974 RASL10AQ92737 203 aa9.4□□□□□ -0.9
LINC00540-202ENST00000616974 FBLL1A6NHQ2 334 aaKnown RBP9.4□□□□□ -0.91
LINC00540-202ENST00000616974 K7EN84 100 aa9.4□□□□□ -0.91
LINC00540-202ENST00000616974 NUDT3O95989 172 aa9.4□□□□□ -0.91
LINC00540-202ENST00000616974 ZNF506Q5JVG8 444 aa9.4□□□□□ -0.91
LINC00540-202ENST00000616974 Q9UF83 564 aa9.4□□□□□ -0.91
LINC00540-202ENST00000616974 DNAH17Q9UFH2 4485 aa9.39□□□□□ -0.91
LINC00540-202ENST00000616974 MGST1P10620 155 aaKnown RBP9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms