RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 CSNK1G2-AS1Q8NCQ2 148 aa6.86□□□□□ -1.31
TRIM28-208ENST00000597172 NDFIP1Q9BT67 221 aa6.86□□□□□ -1.31
TRIM28-208ENST00000597172 CSTL1Q9H114 145 aa6.86□□□□□ -1.31
TRIM28-208ENST00000597172 C11orf21Q9P2W6 132 aa6.86□□□□□ -1.31
TRIM28-208ENST00000597172 XCL2Q9UBD3 114 aa6.86□□□□□ -1.31
TRIM28-208ENST00000597172 TRAV12-3A0A0B4J271 114 aa6.85□□□□□ -1.31
TRIM28-208ENST00000597172 C7orf71A4D174 169 aa6.85□□□□□ -1.31
TRIM28-208ENST00000597172 SH2D1AO60880 128 aa6.85□□□□□ -1.31
TRIM28-208ENST00000597172 ADIRFQ15847 76 aa6.85□□□□□ -1.31
TRIM28-208ENST00000597172 Q6AWC8 147 aa6.85□□□□□ -1.31
TRIM28-208ENST00000597172 PRR27Q6MZM9 219 aa6.85□□□□□ -1.31
TRIM28-208ENST00000597172 C1orf158Q8N1D5 194 aa6.85□□□□□ -1.31
TRIM28-208ENST00000597172 NUDT10Q8NFP7 164 aa6.85□□□□□ -1.31
TRIM28-208ENST00000597172 ISOC2Q96AB3 205 aa6.85□□□□□ -1.31
TRIM28-208ENST00000597172 NUDT11Q96G61 164 aa6.85□□□□□ -1.31
TRIM28-208ENST00000597172 KIR2DL5BA0A0G2JN68 375 aa6.84□□□□□ -1.31
TRIM28-208ENST00000597172 KIR2DL5BA0A0G2JPC4 375 aa6.84□□□□□ -1.31
TRIM28-208ENST00000597172 FABP5P3A8MUU1 101 aa6.84□□□□□ -1.31
TRIM28-208ENST00000597172 ATP6V1G1O75348 118 aa6.84□□□□□ -1.31
TRIM28-208ENST00000597172 APOC3P02656 99 aa6.84□□□□□ -1.31
TRIM28-208ENST00000597172 PFN1P07737 140 aaKnown RBP6.84□□□□□ -1.31
TRIM28-208ENST00000597172 NUTF2P61970 127 aaKnown RBP6.84□□□□□ -1.31
TRIM28-208ENST00000597172 FAM162BQ5T6X4 162 aa6.84□□□□□ -1.31
TRIM28-208ENST00000597172 KIR2DL5AQ8N109 375 aa6.84□□□□□ -1.31
TRIM28-208ENST00000597172 KIR2DL5BQ8NHK3 375 aa6.84□□□□□ -1.31
TRIM28-208ENST00000597172 RNASE7Q9H1E1 156 aaKnown RBP6.84□□□□□ -1.31
TRIM28-208ENST00000597172 FAT2Q9NYQ8 4349 aa6.83□□□□□ -1.32
TRIM28-208ENST00000597172 TRAV21A0A0B4J279 112 aa6.83□□□□□ -1.32
TRIM28-208ENST00000597172 IGKV3D-20A0A0C4DH25 116 aa6.83□□□□□ -1.32
TRIM28-208ENST00000597172 CA1P00915 261 aaPredicted RBP6.83□□□□□ -1.32
TRIM28-208ENST00000597172 AMBPP02760 352 aa6.83□□□□□ -1.32
TRIM28-208ENST00000597172 PRM2P04554 102 aa6.83□□□□□ -1.32
TRIM28-208ENST00000597172 PNRC1Q12796 327 aaPredicted RBP6.83□□□□□ -1.32
TRIM28-208ENST00000597172 ATRAIDQ6UW56 229 aa6.83□□□□□ -1.32
TRIM28-208ENST00000597172 FAM231DQ6ZW35 169 aa6.83□□□□□ -1.32
TRIM28-208ENST00000597172 CLRN3Q8NCR9 226 aa6.83□□□□□ -1.32
TRIM28-208ENST00000597172 SFRP2Q96HF1 295 aa6.83□□□□□ -1.32
TRIM28-208ENST00000597172 BIN3Q9NQY0 253 aa6.83□□□□□ -1.32
TRIM28-208ENST00000597172 OSTCQ9NRP0 149 aa6.83□□□□□ -1.32
TRIM28-208ENST00000597172 M0R036 132 aa6.82□□□□□ -1.32
TRIM28-208ENST00000597172 APOC4P55056 127 aa6.82□□□□□ -1.32
TRIM28-208ENST00000597172 ERVFC1-1P60608 527 aa6.82□□□□□ -1.32
TRIM28-208ENST00000597172 RPL19P84098 196 aaKnown RBP6.82□□□□□ -1.32
TRIM28-208ENST00000597172 ANXA2RQ3ZCQ2 193 aa6.82□□□□□ -1.32
TRIM28-208ENST00000597172 RNF212Q495C1 297 aa6.82□□□□□ -1.32
TRIM28-208ENST00000597172 DAZAP1Q96EP5 407 aaKnown RBP6.82□□□□□ -1.32
TRIM28-208ENST00000597172 C20orf144Q9BQM9 153 aa6.82□□□□□ -1.32
TRIM28-208ENST00000597172 C1QTNF4Q9BXJ3 329 aa6.82□□□□□ -1.32
TRIM28-208ENST00000597172 V9GYV3 84 aa6.82□□□□□ -1.32
TRIM28-208ENST00000597172 DNAH17Q9UFH2 4485 aa6.82□□□□□ -1.32
TRIM28-208ENST00000597172 DNAH2Q9P225 4427 aa6.82□□□□□ -1.32
TRIM28-208ENST00000597172 C7orf77A4D0Y5 90 aa6.81□□□□□ -1.32
TRIM28-208ENST00000597172 B4DEV8 164 aa6.81□□□□□ -1.32
TRIM28-208ENST00000597172 UBE2CO00762 179 aa6.81□□□□□ -1.32
TRIM28-208ENST00000597172 GNRH2O43555 120 aa6.81□□□□□ -1.32
TRIM28-208ENST00000597172 GATCO43716 136 aaKnown RBP6.81□□□□□ -1.32
TRIM28-208ENST00000597172 INSP01308 110 aa6.81□□□□□ -1.32
TRIM28-208ENST00000597172 ORM1P02763 201 aa6.81□□□□□ -1.32
TRIM28-208ENST00000597172 TDRG1Q3Y452 100 aa6.81□□□□□ -1.32
TRIM28-208ENST00000597172 LINC01559Q495D7 138 aa6.81□□□□□ -1.32
TRIM28-208ENST00000597172 MUC21Q5SSG8 566 aa6.81□□□□□ -1.32
TRIM28-208ENST00000597172 IBA57Q5T440 356 aaKnown RBP6.81□□□□□ -1.32
TRIM28-208ENST00000597172 SVBPQ8N300 66 aa6.81□□□□□ -1.32
TRIM28-208ENST00000597172 OR10G8Q8NGN5 311 aa6.81□□□□□ -1.32
TRIM28-208ENST00000597172 LINC01587Q99440 93 aa6.81□□□□□ -1.32
TRIM28-208ENST00000597172 TP53TG3Q9ULZ0 132 aa6.81□□□□□ -1.32
TRIM28-208ENST00000597172 IGHV1OR15-1A0A075B7D0 117 aa6.8□□□□□ -1.32
TRIM28-208ENST00000597172 TMSB15BA0A087X1C1 80 aa6.8□□□□□ -1.32
TRIM28-208ENST00000597172 TMEM189A5PLL7 270 aa6.8□□□□□ -1.32
TRIM28-208ENST00000597172 ZNF705GA8MUZ8 300 aaPredicted RBP6.8□□□□□ -1.32
TRIM28-208ENST00000597172 H7BYZ3 331 aa6.8□□□□□ -1.32
TRIM28-208ENST00000597172 SNAPINO95295 136 aa6.8□□□□□ -1.32
TRIM28-208ENST00000597172 P01737 135 aa6.8□□□□□ -1.32
TRIM28-208ENST00000597172 GZMBP10144 247 aa6.8□□□□□ -1.32
TRIM28-208ENST00000597172 AZU1P20160 251 aa6.8□□□□□ -1.32
TRIM28-208ENST00000597172 ZNF705AQ6ZN79 300 aaPredicted RBP6.8□□□□□ -1.32
TRIM28-208ENST00000597172 Q6ZWC4 215 aa6.8□□□□□ -1.32
TRIM28-208ENST00000597172 OR2D3Q8NGH3 330 aa6.8□□□□□ -1.32
TRIM28-208ENST00000597172 LINC00467Q9BRT7 94 aa6.8□□□□□ -1.32
TRIM28-208ENST00000597172 RPP21Q9H633 154 aaKnown RBP6.8□□□□□ -1.32
TRIM28-208ENST00000597172 NAGKQ9UJ70 344 aa6.8□□□□□ -1.32
TRIM28-208ENST00000597172 IGHV3OR16-12A0A075B7B8 117 aa6.79□□□□□ -1.32
TRIM28-208ENST00000597172 GRIFINA4D1Z8 144 aa6.79□□□□□ -1.32
TRIM28-208ENST00000597172 MT-ND4LP03901 98 aa6.79□□□□□ -1.32
TRIM28-208ENST00000597172 TYMSP04818 313 aa6.79□□□□□ -1.32
TRIM28-208ENST00000597172 HTN1P15515 57 aa6.79□□□□□ -1.32
TRIM28-208ENST00000597172 S100A1P23297 94 aa6.79□□□□□ -1.32
TRIM28-208ENST00000597172 RHEBQ15382 184 aa6.79□□□□□ -1.32
TRIM28-208ENST00000597172 DEFB135Q30KP9 77 aa6.79□□□□□ -1.32
TRIM28-208ENST00000597172 FAM159AQ6UWV7 190 aa6.79□□□□□ -1.32
TRIM28-208ENST00000597172 TMEM256Q8N2U0 113 aa6.79□□□□□ -1.32
TRIM28-208ENST00000597172 C15orf54Q8N8G6 183 aa6.79□□□□□ -1.32
TRIM28-208ENST00000597172 RNF183Q96D59 192 aa6.79□□□□□ -1.32
TRIM28-208ENST00000597172 ANAPC16Q96DE5 110 aa6.79□□□□□ -1.32
TRIM28-208ENST00000597172 SPATA25Q9BR10 227 aa6.79□□□□□ -1.32
TRIM28-208ENST00000597172 PYGO2Q9BRQ0 406 aa6.79□□□□□ -1.32
TRIM28-208ENST00000597172 RPS10P5Q9NQ39 176 aa6.79□□□□□ -1.32
TRIM28-208ENST00000597172 GOLT1BQ9Y3E0 138 aa6.79□□□□□ -1.32
TRIM28-208ENST00000597172 X6R8D5 127 aa6.79□□□□□ -1.32
TRIM28-208ENST00000597172 DNAH6Q9C0G6 4158 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms