RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 IL17DQ8TAD2 202 aa13.02□□□□□ -0.33
CCDC40-213ENST00000574933 SMIM7Q9BQ49 75 aa13.02□□□□□ -0.33
CCDC40-213ENST00000574933 TRGV11A0A075B6L2 103 aa13.01□□□□□ -0.33
CCDC40-213ENST00000574933 TEX48A0A1B0GUV7 120 aa13.01□□□□□ -0.33
CCDC40-213ENST00000574933 LINC00862A6NCI5 91 aa13.01□□□□□ -0.33
CCDC40-213ENST00000574933 TCL1AP56279 114 aa13.01□□□□□ -0.33
CCDC40-213ENST00000574933 LINC01559Q495D7 138 aa13.01□□□□□ -0.33
CCDC40-213ENST00000574933 OCC1Q8TAD7 63 aa13.01□□□□□ -0.33
CCDC40-213ENST00000574933 SDF2L1Q9HCN8 221 aa13.01□□□□□ -0.33
CCDC40-213ENST00000574933 DKK2Q9UBU2 259 aa13.01□□□□□ -0.33
CCDC40-213ENST00000574933 IGKV3D-20A0A0C4DH25 116 aa13□□□□□ -0.33
CCDC40-213ENST00000574933 PGPEP1LA6NFU8 196 aa13□□□□□ -0.33
CCDC40-213ENST00000574933 LYRM9A8MSI8 78 aa13□□□□□ -0.33
CCDC40-213ENST00000574933 ZNF727A8MUV8 499 aa13□□□□□ -0.33
CCDC40-213ENST00000574933 TYMSP04818 313 aa13□□□□□ -0.33
CCDC40-213ENST00000574933 CEBPGP53567 150 aa13□□□□□ -0.33
CCDC40-213ENST00000574933 DAZ2Q13117 558 aaKnown RBP13□□□□□ -0.33
CCDC40-213ENST00000574933 DNLZQ5SXM8 178 aa13□□□□□ -0.33
CCDC40-213ENST00000574933 UQCC3Q6UW78 93 aa13□□□□□ -0.33
CCDC40-213ENST00000574933 NAGKQ9UJ70 344 aa13□□□□□ -0.33
CCDC40-213ENST00000574933 TIMM8BQ9Y5J9 83 aaPredicted RBP13□□□□□ -0.33
CCDC40-213ENST00000574933 IGHV3-16A0A0C4DH30 117 aa12.99□□□□□ -0.33
CCDC40-213ENST00000574933 C19orf71A6NCJ1 209 aa12.99□□□□□ -0.33
CCDC40-213ENST00000574933 KRBOX1C9JBD0 128 aa12.99□□□□□ -0.33
CCDC40-213ENST00000574933 GNRH2O43555 120 aa12.99□□□□□ -0.33
CCDC40-213ENST00000574933 ZNF575Q86XF7 245 aa12.99□□□□□ -0.33
CCDC40-213ENST00000574933 WWC2-AS2Q96NR7 200 aa12.99□□□□□ -0.33
CCDC40-213ENST00000574933 GSN-AS1Q9NRJ2 163 aa12.99□□□□□ -0.33
CCDC40-213ENST00000574933 NACAE9PAV3 2078 aa12.98□□□□□ -0.33
CCDC40-213ENST00000574933 SNURFLB1AK76 121 aa12.98□□□□□ -0.33
CCDC40-213ENST00000574933 K7EN84 100 aa12.98□□□□□ -0.33
CCDC40-213ENST00000574933 CXCL1P09341 107 aa12.98□□□□□ -0.33
CCDC40-213ENST00000574933 SPART-AS1P0CW21 52 aa12.98□□□□□ -0.33
CCDC40-213ENST00000574933 MGST1P10620 155 aaKnown RBP12.98□□□□□ -0.33
CCDC40-213ENST00000574933 ZNF415Q09FC8 603 aa12.98□□□□□ -0.33
CCDC40-213ENST00000574933 SOHLH1Q5JUK2 328 aa12.98□□□□□ -0.33
CCDC40-213ENST00000574933 FAM222AQ5U5X8 452 aa12.98□□□□□ -0.33
CCDC40-213ENST00000574933 LINC00612Q8N6U2 182 aa12.98□□□□□ -0.33
CCDC40-213ENST00000574933 MDFICQ9P1T7 246 aa12.98□□□□□ -0.33
CCDC40-213ENST00000574933 CELA1Q9UNI1 258 aa12.98□□□□□ -0.33
CCDC40-213ENST00000574933 B4DEV8 164 aa12.97□□□□□ -0.33
CCDC40-213ENST00000574933 ORM1P02763 201 aa12.97□□□□□ -0.33
CCDC40-213ENST00000574933 EMP1P54849 157 aa12.97□□□□□ -0.33
CCDC40-213ENST00000574933 PRR27Q6MZM9 219 aa12.97□□□□□ -0.33
CCDC40-213ENST00000574933 LINC01551Q86U37 167 aa12.97□□□□□ -0.33
CCDC40-213ENST00000574933 C11orf45Q8TAV5 145 aa12.97□□□□□ -0.33
CCDC40-213ENST00000574933 SPXQ9BT56 116 aa12.97□□□□□ -0.33
CCDC40-213ENST00000574933 CXorf65A6NEN9 183 aa12.96□□□□□ -0.33
CCDC40-213ENST00000574933 OR5I1Q13606 314 aa12.96□□□□□ -0.33
CCDC40-213ENST00000574933 TMEM241Q24JQ0 296 aa12.96□□□□□ -0.33
CCDC40-213ENST00000574933 C9orf85Q96MD7 179 aa12.96□□□□□ -0.33
CCDC40-213ENST00000574933 NOP10Q9NPE3 64 aaKnown RBP12.96□□□□□ -0.33
CCDC40-213ENST00000574933 SPINK4O60575 86 aa12.95□□□□□ -0.34
CCDC40-213ENST00000574933 C12orf74Q32Q52 190 aa12.95□□□□□ -0.34
CCDC40-213ENST00000574933 LGALS9BQ3B8N2 356 aa12.95□□□□□ -0.34
CCDC40-213ENST00000574933 FAM231DQ6ZW35 169 aa12.95□□□□□ -0.34
CCDC40-213ENST00000574933 COMMD7Q86VX2 200 aa12.95□□□□□ -0.34
CCDC40-213ENST00000574933 NAT8Q9UHE5 227 aa12.95□□□□□ -0.34
CCDC40-213ENST00000574933 M0R036 132 aa12.94□□□□□ -0.34
CCDC40-213ENST00000574933 SFTA3P0C7M3 94 aa12.94□□□□□ -0.34
CCDC40-213ENST00000574933 RNASE3P12724 160 aaKnown RBP12.94□□□□□ -0.34
CCDC40-213ENST00000574933 PTH2Q96A98 100 aa12.94□□□□□ -0.34
CCDC40-213ENST00000574933 DAZAP1Q96EP5 407 aaKnown RBP12.94□□□□□ -0.34
CCDC40-213ENST00000574933 ASIPP42127 132 aa12.93□□□□□ -0.34
CCDC40-213ENST00000574933 NANOS2P60321 138 aaKnown RBP12.93□□□□□ -0.34
CCDC40-213ENST00000574933 RPL23P62829 140 aaKnown RBP12.93□□□□□ -0.34
CCDC40-213ENST00000574933 NUDT10Q8NFP7 164 aa12.93□□□□□ -0.34
CCDC40-213ENST00000574933 NUDT11Q96G61 164 aa12.93□□□□□ -0.34
CCDC40-213ENST00000574933 C18orf15Q96N68 181 aa12.93□□□□□ -0.34
CCDC40-213ENST00000574933 IL36BQ9NZH7 164 aa12.93□□□□□ -0.34
CCDC40-213ENST00000574933 P01737 135 aa12.92□□□□□ -0.34
CCDC40-213ENST00000574933 MED14OSP0DP75 135 aa12.92□□□□□ -0.34
CCDC40-213ENST00000574933 RPS20P60866 119 aaKnown RBP12.92□□□□□ -0.34
CCDC40-213ENST00000574933 RPL19P84098 196 aaKnown RBP12.92□□□□□ -0.34
CCDC40-213ENST00000574933 RASL10AQ92737 203 aa12.92□□□□□ -0.34
CCDC40-213ENST00000574933 DNAH7Q8WXX0 4024 aa12.92□□□□□ -0.34
CCDC40-213ENST00000574933 M0R2P5 195 aa12.91□□□□□ -0.34
CCDC40-213ENST00000574933 DAD1P61803 113 aa12.91□□□□□ -0.34
CCDC40-213ENST00000574933 Q6ZTI0 123 aa12.91□□□□□ -0.34
CCDC40-213ENST00000574933 ISOC2Q96AB3 205 aa12.91□□□□□ -0.34
CCDC40-213ENST00000574933 NDUFAF3Q9BU61 184 aa12.91□□□□□ -0.34
CCDC40-213ENST00000574933 RNASE7Q9H1E1 156 aaKnown RBP12.91□□□□□ -0.34
CCDC40-213ENST00000574933 SCRT2Q9NQ03 307 aa12.91□□□□□ -0.34
CCDC40-213ENST00000574933 OSTCQ9NRP0 149 aa12.91□□□□□ -0.34
CCDC40-213ENST00000574933 TMSB15BA0A087X1C1 80 aa12.9□□□□□ -0.34
CCDC40-213ENST00000574933 TMEM218A2RU14 115 aa12.9□□□□□ -0.34
CCDC40-213ENST00000574933 GRIFINA4D1Z8 144 aa12.9□□□□□ -0.34
CCDC40-213ENST00000574933 S100A4P26447 101 aaKnown RBP12.9□□□□□ -0.34
CCDC40-213ENST00000574933 PIK3CD-AS1Q5SR53 167 aa12.9□□□□□ -0.34
CCDC40-213ENST00000574933 OR2D3Q8NGH3 330 aa12.9□□□□□ -0.34
CCDC40-213ENST00000574933 MUC7Q8TAX7 377 aa12.9□□□□□ -0.34
CCDC40-213ENST00000574933 SSBP4Q9BWG4 385 aaPredicted RBP12.9□□□□□ -0.34
CCDC40-213ENST00000574933 TRGV1A0A0A0MS02 117 aa12.89□□□□□ -0.35
CCDC40-213ENST00000574933 XKRY2A2RUG3 117 aa12.89□□□□□ -0.35
CCDC40-213ENST00000574933 ARMS2P0C7Q2 107 aa12.89□□□□□ -0.35
CCDC40-213ENST00000574933 CT83Q5H943 113 aa12.89□□□□□ -0.35
CCDC40-213ENST00000574933 Q6ZTC4 211 aa12.89□□□□□ -0.35
CCDC40-213ENST00000574933 RPP21Q9H633 154 aaKnown RBP12.89□□□□□ -0.35
CCDC40-213ENST00000574933 H3BVH4 76 aa12.88□□□□□ -0.35
CCDC40-213ENST00000574933 SNAI2O43623 268 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms