RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 NUP210LQ5VU65 1888 aa12□□□□□ -0.49
CIITA-204ENST00000570546 WI2-2373I1.2A0A1W2PRP0 233 aa12□□□□□ -0.49
CIITA-204ENST00000570546 C6orf226Q5I0X4 101 aa11.99□□□□□ -0.49
CIITA-204ENST00000570546 ZNF625Q96I27 306 aaPredicted RBP11.99□□□□□ -0.49
CIITA-204ENST00000570546 CCL25O15444 150 aa11.99□□□□□ -0.49
CIITA-204ENST00000570546 CTSGP08311 255 aa11.99□□□□□ -0.49
CIITA-204ENST00000570546 ZNF503Q96F45 646 aa11.99□□□□□ -0.49
CIITA-204ENST00000570546 LENEPQ9Y5L5 61 aa11.99□□□□□ -0.49
CIITA-204ENST00000570546 ACACAQ13085 2346 aa11.99□□□□□ -0.49
CIITA-204ENST00000570546 CENPVL3A0A0U1RRI6 287 aa11.99□□□□□ -0.49
CIITA-204ENST00000570546 C12orf74Q32Q52 190 aa11.99□□□□□ -0.49
CIITA-204ENST00000570546 ZNF493Q6ZR52 646 aa11.99□□□□□ -0.49
CIITA-204ENST00000570546 NCKAP5O14513 1909 aa11.98□□□□□ -0.49
CIITA-204ENST00000570546 LGALS1P09382 135 aaKnown RBP11.98□□□□□ -0.49
CIITA-204ENST00000570546 OVOL2Q9BRP0 275 aa11.98□□□□□ -0.49
CIITA-204ENST00000570546 GAGE12JA6NER3 117 aa11.98□□□□□ -0.49
CIITA-204ENST00000570546 PRSS29PA6NIE9 313 aa11.98□□□□□ -0.49
CIITA-204ENST00000570546 GAGE4Q13068 117 aa11.98□□□□□ -0.49
CIITA-204ENST00000570546 GAGE5Q13069 117 aa11.98□□□□□ -0.49
CIITA-204ENST00000570546 MSRB1Q9NZV6 116 aa11.98□□□□□ -0.49
CIITA-204ENST00000570546 H3BMG7 143 aa11.98□□□□□ -0.49
CIITA-204ENST00000570546 NBL1P41271 181 aa11.97□□□□□ -0.49
CIITA-204ENST00000570546 PPDPFLQ8WWR9 84 aa11.97□□□□□ -0.49
CIITA-204ENST00000570546 AKAP6Q13023 2319 aa11.97□□□□□ -0.49
CIITA-204ENST00000570546 IGHV3-38A0A0C4DH36 116 aa11.97□□□□□ -0.49
CIITA-204ENST00000570546 J3QQQ9 107 aa11.97□□□□□ -0.49
CIITA-204ENST00000570546 PROP1O75360 226 aa11.97□□□□□ -0.49
CIITA-204ENST00000570546 SP5Q6BEB4 398 aaPredicted RBP11.97□□□□□ -0.49
CIITA-204ENST00000570546 DPH3Q96FX2 82 aa11.97□□□□□ -0.49
CIITA-204ENST00000570546 PRO1854Q9UHT4 67 aa11.97□□□□□ -0.49
CIITA-204ENST00000570546 K7EMI3 77 aa11.97□□□□□ -0.49
CIITA-204ENST00000570546 IGLV1-47P01700 117 aa11.97□□□□□ -0.49
CIITA-204ENST00000570546 AZU1P20160 251 aa11.97□□□□□ -0.49
CIITA-204ENST00000570546 ANKRD39Q53RE8 183 aa11.97□□□□□ -0.49
CIITA-204ENST00000570546 H3BMM0 161 aa11.96□□□□□ -0.49
CIITA-204ENST00000570546 SPRY2O43597 315 aa11.96□□□□□ -0.49
CIITA-204ENST00000570546 SRSF2Q01130 221 aaKnown RBP11.96□□□□□ -0.49
CIITA-204ENST00000570546 UBE2WQ96B02 151 aa11.96□□□□□ -0.49
CIITA-204ENST00000570546 EIF4EBP1Q13541 118 aaPredicted RBP11.96□□□□□ -0.49
CIITA-204ENST00000570546 NDUFA12Q9UI09 145 aa11.96□□□□□ -0.49
CIITA-204ENST00000570546 FGF6P10767 208 aa11.96□□□□□ -0.5
CIITA-204ENST00000570546 JPT2Q9H910 190 aa11.96□□□□□ -0.5
CIITA-204ENST00000570546 EML6Q6ZMW3 1958 aa11.95□□□□□ -0.5
CIITA-204ENST00000570546 ADAMTS9Q9P2N4 1935 aa11.95□□□□□ -0.5
CIITA-204ENST00000570546 CADP27708 2225 aa11.95□□□□□ -0.5
CIITA-204ENST00000570546 J3QLI3 93 aa11.95□□□□□ -0.5
CIITA-204ENST00000570546 DEFB130BP0DP73 79 aa11.95□□□□□ -0.5
CIITA-204ENST00000570546 DEFB130AP0DP74 79 aa11.95□□□□□ -0.5
CIITA-204ENST00000570546 CFHR3Q02985 330 aa11.95□□□□□ -0.5
CIITA-204ENST00000570546 SS18Q15532 418 aa11.95□□□□□ -0.5
CIITA-204ENST00000570546 AMTNQ6UX39 209 aa11.95□□□□□ -0.5
CIITA-204ENST00000570546 ZNRF2Q8NHG8 242 aa11.95□□□□□ -0.5
CIITA-204ENST00000570546 YPEL4Q96NS1 127 aa11.95□□□□□ -0.5
CIITA-204ENST00000570546 SPTBN1Q01082 2364 aaKnown RBP11.95□□□□□ -0.5
CIITA-204ENST00000570546 IGKV1D-37A0A075B6S9 117 aa11.95□□□□□ -0.5
CIITA-204ENST00000570546 UTF1Q5T230 341 aa11.95□□□□□ -0.5
CIITA-204ENST00000570546 BUB3O43684 328 aa11.94□□□□□ -0.5
CIITA-204ENST00000570546 CRYGCP07315 174 aa11.94□□□□□ -0.5
CIITA-204ENST00000570546 ATP6V0BQ99437 205 aa11.94□□□□□ -0.5
CIITA-204ENST00000570546 USF3Q68DE3 2245 aa11.94□□□□□ -0.5
CIITA-204ENST00000570546 TRBV6-1A0A0K0K1D8 114 aa11.94□□□□□ -0.5
CIITA-204ENST00000570546 C19orf71A6NCJ1 209 aa11.94□□□□□ -0.5
CIITA-204ENST00000570546 CGB3P0DN86 165 aa11.94□□□□□ -0.5
CIITA-204ENST00000570546 CGB7P0DN87 165 aa11.94□□□□□ -0.5
CIITA-204ENST00000570546 Q8N9W7 124 aa11.94□□□□□ -0.5
CIITA-204ENST00000570546 RPL39LQ96EH5 51 aaKnown RBP11.94□□□□□ -0.5
CIITA-204ENST00000570546 NCOA6Q14686 2063 aaPredicted RBP11.93□□□□□ -0.5
CIITA-204ENST00000570546 TRBV25-1A0A075B6N4 114 aa11.93□□□□□ -0.5
CIITA-204ENST00000570546 GTF3C1Q12789 2109 aa11.93□□□□□ -0.5
CIITA-204ENST00000570546 GAGE2AQ6NT46 116 aa11.93□□□□□ -0.5
CIITA-204ENST00000570546 PRAC2D3DTV9 90 aa11.93□□□□□ -0.5
CIITA-204ENST00000570546 IGLV2-8P01709 118 aa11.93□□□□□ -0.5
CIITA-204ENST00000570546 PCDH15Q96QU1 1955 aa11.93□□□□□ -0.5
CIITA-204ENST00000570546 INTS1Q8N201 2190 aaKnown RBP11.93□□□□□ -0.5
CIITA-204ENST00000570546 ELANEP08246 267 aa11.93□□□□□ -0.5
CIITA-204ENST00000570546 C1orf229Q6ZS94 237 aaPredicted RBP11.93□□□□□ -0.5
CIITA-204ENST00000570546 Q8N7P7 452 aa11.93□□□□□ -0.5
CIITA-204ENST00000570546 FOXI2Q6ZQN5 318 aa11.92□□□□□ -0.5
CIITA-204ENST00000570546 BOD1L2Q8IYS8 172 aa11.92□□□□□ -0.5
CIITA-204ENST00000570546 RHOHQ15669 191 aa11.92□□□□□ -0.5
CIITA-204ENST00000570546 LINC00574Q9H8X3 128 aa11.92□□□□□ -0.5
CIITA-204ENST00000570546 GAGE12HA6NDE8 117 aa11.92□□□□□ -0.5
CIITA-204ENST00000570546 VWC2LB2RUY7 222 aa11.92□□□□□ -0.5
CIITA-204ENST00000570546 RNASE13Q5GAN3 156 aaKnown RBP11.92□□□□□ -0.5
CIITA-204ENST00000570546 C16orf54Q6UWD8 224 aa11.92□□□□□ -0.5
CIITA-204ENST00000570546 PCNX3Q9H6A9 2034 aa11.91□□□□□ -0.5
CIITA-204ENST00000570546 HIST1H4AP62805 103 aaKnown RBP11.91□□□□□ -0.5
CIITA-204ENST00000570546 Q96MF0 132 aa11.91□□□□□ -0.5
CIITA-204ENST00000570546 COL6A6A6NMZ7 2263 aa11.91□□□□□ -0.5
CIITA-204ENST00000570546 MALRD1Q5VYJ5 2156 aa11.9□□□□□ -0.5
CIITA-204ENST00000570546 CTRLP40313 264 aa11.9□□□□□ -0.5
CIITA-204ENST00000570546 DEFB112Q30KQ8 113 aa11.9□□□□□ -0.5
CIITA-204ENST00000570546 IGHV4-59P01825 116 aa11.9□□□□□ -0.5
CIITA-204ENST00000570546 SUMO4Q6EEV6 95 aa11.9□□□□□ -0.5
CIITA-204ENST00000570546 TMEM243Q9BU79 118 aa11.9□□□□□ -0.5
CIITA-204ENST00000570546 LAMTOR3Q9UHA4 124 aa11.9□□□□□ -0.5
CIITA-204ENST00000570546 RIF1Q5UIP0 2472 aaKnown RBP11.9□□□□□ -0.5
CIITA-204ENST00000570546 GAGE7O76087 117 aa11.9□□□□□ -0.51
CIITA-204ENST00000570546 GAGE12FP0CL80 117 aa11.9□□□□□ -0.51
CIITA-204ENST00000570546 GAGE12GP0CL81 117 aa11.9□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms