RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 RRN3P1Q2M238 152 aa6.62□□□□□ -1.35
VPS35-211ENST00000569950 EIF4E3Q8N5X7 224 aaKnown RBP6.62□□□□□ -1.35
VPS35-211ENST00000569950 TMEM263Q8WUH6 116 aaKnown RBP6.62□□□□□ -1.35
VPS35-211ENST00000569950 NIPSNAP3BQ9BS92 247 aa6.62□□□□□ -1.35
VPS35-211ENST00000569950 SMDT1Q9H4I9 107 aa6.62□□□□□ -1.35
VPS35-211ENST00000569950 MDFICQ9P1T7 246 aa6.62□□□□□ -1.35
VPS35-211ENST00000569950 IGHV3-16A0A0C4DH30 117 aa6.61□□□□□ -1.35
VPS35-211ENST00000569950 KRBOX1C9JBD0 128 aa6.61□□□□□ -1.35
VPS35-211ENST00000569950 RNASE3P12724 160 aaKnown RBP6.61□□□□□ -1.35
VPS35-211ENST00000569950 ADCYAP1P18509 176 aa6.61□□□□□ -1.35
VPS35-211ENST00000569950 RAB14P61106 215 aa6.61□□□□□ -1.35
VPS35-211ENST00000569950 RPL19P84098 196 aaKnown RBP6.61□□□□□ -1.35
VPS35-211ENST00000569950 OR5I1Q13606 314 aa6.61□□□□□ -1.35
VPS35-211ENST00000569950 LINC01559Q495D7 138 aa6.61□□□□□ -1.35
VPS35-211ENST00000569950 DNLZQ5SXM8 178 aa6.61□□□□□ -1.35
VPS35-211ENST00000569950 SMIM12Q96EX1 92 aa6.61□□□□□ -1.35
VPS35-211ENST00000569950 NDFIP1Q9BT67 221 aa6.61□□□□□ -1.35
VPS35-211ENST00000569950 TMEM208Q9BTX3 173 aa6.61□□□□□ -1.35
VPS35-211ENST00000569950 DKK2Q9UBU2 259 aa6.61□□□□□ -1.35
VPS35-211ENST00000569950 FABP5P3A8MUU1 101 aa6.6□□□□□ -1.35
VPS35-211ENST00000569950 GNG4P50150 75 aa6.6□□□□□ -1.35
VPS35-211ENST00000569950 TCL1AP56279 114 aa6.6□□□□□ -1.35
VPS35-211ENST00000569950 C12orf74Q32Q52 190 aa6.6□□□□□ -1.35
VPS35-211ENST00000569950 IBA57Q5T440 356 aaKnown RBP6.6□□□□□ -1.35
VPS35-211ENST00000569950 FAM162BQ5T6X4 162 aa6.6□□□□□ -1.35
VPS35-211ENST00000569950 ZNF493Q6ZR52 646 aa6.6□□□□□ -1.35
VPS35-211ENST00000569950 LINC01551Q86U37 167 aa6.6□□□□□ -1.35
VPS35-211ENST00000569950 C9orf85Q96MD7 179 aa6.6□□□□□ -1.35
VPS35-211ENST00000569950 SMIM7Q9BQ49 75 aa6.6□□□□□ -1.35
VPS35-211ENST00000569950 GSN-AS1Q9NRJ2 163 aa6.6□□□□□ -1.35
VPS35-211ENST00000569950 DNAH1Q9P2D7 4330 aa6.6□□□□□ -1.35
VPS35-211ENST00000569950 HTN1P15515 57 aa6.59□□□□□ -1.35
VPS35-211ENST00000569950 DAZ2Q13117 558 aaKnown RBP6.59□□□□□ -1.35
VPS35-211ENST00000569950 PEA15Q15121 130 aa6.59□□□□□ -1.35
VPS35-211ENST00000569950 FAM222AQ5U5X8 452 aa6.59□□□□□ -1.35
VPS35-211ENST00000569950 C16orf74Q96GX8 76 aa6.59□□□□□ -1.35
VPS35-211ENST00000569950 SCRT2Q9NQ03 307 aa6.59□□□□□ -1.35
VPS35-211ENST00000569950 LY96Q9Y6Y9 160 aa6.59□□□□□ -1.35
VPS35-211ENST00000569950 LYSTQ99698 3801 aa6.59□□□□□ -1.36
VPS35-211ENST00000569950 VPS13DQ5THJ4 4388 aa6.58□□□□□ -1.36
VPS35-211ENST00000569950 CBY3A6NI87 242 aa6.58□□□□□ -1.36
VPS35-211ENST00000569950 ZNF727A8MUV8 499 aa6.58□□□□□ -1.36
VPS35-211ENST00000569950 M0R036 132 aa6.58□□□□□ -1.36
VPS35-211ENST00000569950 SPINK4O60575 86 aa6.58□□□□□ -1.36
VPS35-211ENST00000569950 SFTA3P0C7M3 94 aa6.58□□□□□ -1.36
VPS35-211ENST00000569950 CEBPGP53567 150 aa6.58□□□□□ -1.36
VPS35-211ENST00000569950 EMP1P54849 157 aa6.58□□□□□ -1.36
VPS35-211ENST00000569950 NANOS2P60321 138 aaKnown RBP6.58□□□□□ -1.36
VPS35-211ENST00000569950 RPL23P62829 140 aaKnown RBP6.58□□□□□ -1.36
VPS35-211ENST00000569950 PRR27Q6MZM9 219 aa6.58□□□□□ -1.36
VPS35-211ENST00000569950 FAM159AQ6UWV7 190 aa6.58□□□□□ -1.36
VPS35-211ENST00000569950 Q6ZTI0 123 aa6.58□□□□□ -1.36
VPS35-211ENST00000569950 COMMD7Q86VX2 200 aa6.58□□□□□ -1.36
VPS35-211ENST00000569950 POM121L12Q8N7R1 296 aa6.58□□□□□ -1.36
VPS35-211ENST00000569950 NUDT10Q8NFP7 164 aa6.58□□□□□ -1.36
VPS35-211ENST00000569950 NUDT11Q96G61 164 aa6.58□□□□□ -1.36
VPS35-211ENST00000569950 SDF2L1Q9HCN8 221 aa6.58□□□□□ -1.36
VPS35-211ENST00000569950 NOP10Q9NPE3 64 aaKnown RBP6.58□□□□□ -1.36
VPS35-211ENST00000569950 NAGKQ9UJ70 344 aa6.58□□□□□ -1.36
VPS35-211ENST00000569950 GRIFINA4D1Z8 144 aa6.57□□□□□ -1.36
VPS35-211ENST00000569950 TMEM189A5PLL7 270 aa6.57□□□□□ -1.36
VPS35-211ENST00000569950 CXCL1P09341 107 aa6.57□□□□□ -1.36
VPS35-211ENST00000569950 IGLC6P0CF74 106 aa6.57□□□□□ -1.36
VPS35-211ENST00000569950 FAM74A3Q4VXF1 159 aa6.57□□□□□ -1.36
VPS35-211ENST00000569950 UQCC3Q6UW78 93 aa6.57□□□□□ -1.36
VPS35-211ENST00000569950 FAM231DQ6ZW35 169 aa6.57□□□□□ -1.36
VPS35-211ENST00000569950 ISOC2Q96AB3 205 aa6.57□□□□□ -1.36
VPS35-211ENST00000569950 KCNS1Q96KK3 526 aa6.57□□□□□ -1.36
VPS35-211ENST00000569950 SSBP4Q9BWG4 385 aaPredicted RBP6.57□□□□□ -1.36
VPS35-211ENST00000569950 RNASE7Q9H1E1 156 aaKnown RBP6.57□□□□□ -1.36
VPS35-211ENST00000569950 TRGV11A0A075B6L2 103 aa6.56□□□□□ -1.36
VPS35-211ENST00000569950 TMSB15BA0A087X1C1 80 aa6.56□□□□□ -1.36
VPS35-211ENST00000569950 TMEM218A2RU14 115 aa6.56□□□□□ -1.36
VPS35-211ENST00000569950 LYRM9A8MSI8 78 aa6.56□□□□□ -1.36
VPS35-211ENST00000569950 B4DEV8 164 aa6.56□□□□□ -1.36
VPS35-211ENST00000569950 SNAI2O43623 268 aa6.56□□□□□ -1.36
VPS35-211ENST00000569950 ORM1P02763 201 aa6.56□□□□□ -1.36
VPS35-211ENST00000569950 GZMBP10144 247 aa6.56□□□□□ -1.36
VPS35-211ENST00000569950 MGST1P10620 155 aaKnown RBP6.56□□□□□ -1.36
VPS35-211ENST00000569950 ZNF415Q09FC8 603 aa6.56□□□□□ -1.36
VPS35-211ENST00000569950 TMEM241Q24JQ0 296 aa6.56□□□□□ -1.36
VPS35-211ENST00000569950 SOHLH1Q5JUK2 328 aa6.56□□□□□ -1.36
VPS35-211ENST00000569950 C10orf91Q5T1B1 145 aa6.56□□□□□ -1.36
VPS35-211ENST00000569950 Q6ZTC4 211 aa6.56□□□□□ -1.36
VPS35-211ENST00000569950 GTSF1Q8WW33 167 aa6.56□□□□□ -1.36
VPS35-211ENST00000569950 RASL10AQ92737 203 aa6.56□□□□□ -1.36
VPS35-211ENST00000569950 C18orf15Q96N68 181 aa6.56□□□□□ -1.36
VPS35-211ENST00000569950 WWC2-AS2Q96NR7 200 aa6.56□□□□□ -1.36
VPS35-211ENST00000569950 MRPL16Q9NX20 251 aaKnown RBP6.56□□□□□ -1.36
VPS35-211ENST00000569950 IL36BQ9NZH7 164 aa6.56□□□□□ -1.36
VPS35-211ENST00000569950 NAT8Q9UHE5 227 aa6.56□□□□□ -1.36
VPS35-211ENST00000569950 TIMM8BQ9Y5J9 83 aaPredicted RBP6.56□□□□□ -1.36
VPS35-211ENST00000569950 KMT2CQ8NEZ4 4911 aaKnown RBP6.55□□□□□ -1.36
VPS35-211ENST00000569950 ALMS1Q8TCU4 4167 aa6.55□□□□□ -1.36
VPS35-211ENST00000569950 H3BVH4 76 aa6.55□□□□□ -1.36
VPS35-211ENST00000569950 NXPH4O95158 308 aa6.55□□□□□ -1.36
VPS35-211ENST00000569950 ARMS2P0C7Q2 107 aa6.55□□□□□ -1.36
VPS35-211ENST00000569950 SPART-AS1P0CW21 52 aa6.55□□□□□ -1.36
VPS35-211ENST00000569950 SMCPP49901 116 aaPredicted RBP6.55□□□□□ -1.36
VPS35-211ENST00000569950 C11orf45Q8TAV5 145 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 89.1 ms