RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 C19orf71A6NCJ1 209 aa8.47□□□□□ -1.05
CLK3-226ENST00000569406 INS-IGF2F8WCM5 200 aa8.47□□□□□ -1.05
CLK3-226ENST00000569406 ZNF22P17026 224 aaPredicted RBP8.47□□□□□ -1.05
CLK3-226ENST00000569406 CCL11P51671 97 aa8.47□□□□□ -1.05
CLK3-226ENST00000569406 PRR20EP86478 221 aa8.47□□□□□ -1.05
CLK3-226ENST00000569406 PRR20CP86479 221 aa8.47□□□□□ -1.05
CLK3-226ENST00000569406 PRR20DP86480 221 aa8.47□□□□□ -1.05
CLK3-226ENST00000569406 PRR20BP86481 221 aa8.47□□□□□ -1.05
CLK3-226ENST00000569406 PRR20AP86496 221 aa8.47□□□□□ -1.05
CLK3-226ENST00000569406 FAM201AQ5SY85 155 aa8.47□□□□□ -1.05
CLK3-226ENST00000569406 ZNRF1Q8ND25 227 aa8.47□□□□□ -1.05
CLK3-226ENST00000569406 IGHV3-21A0A0B4J1V1 117 aa8.46□□□□□ -1.05
CLK3-226ENST00000569406 PGPA6NDG6 321 aa8.46□□□□□ -1.05
CLK3-226ENST00000569406 CKS2P33552 79 aa8.46□□□□□ -1.05
CLK3-226ENST00000569406 TRAV3A0A0B4J244 114 aa8.46□□□□□ -1.06
CLK3-226ENST00000569406 LINC00473A8K010 186 aa8.46□□□□□ -1.06
CLK3-226ENST00000569406 Q1RN00 199 aa8.46□□□□□ -1.06
CLK3-226ENST00000569406 C22orf34Q6ZV56 151 aa8.46□□□□□ -1.06
CLK3-226ENST00000569406 POM121L12Q8N7R1 296 aa8.46□□□□□ -1.06
CLK3-226ENST00000569406 C2orf48Q96LS8 159 aa8.46□□□□□ -1.06
CLK3-226ENST00000569406 PAXXQ9BUH6 204 aa8.46□□□□□ -1.06
CLK3-226ENST00000569406 TRBV7-7A0A0K0K1E9 115 aa8.46□□□□□ -1.06
CLK3-226ENST00000569406 PROP1O75360 226 aa8.46□□□□□ -1.06
CLK3-226ENST00000569406 LGALS1P09382 135 aaKnown RBP8.46□□□□□ -1.06
CLK3-226ENST00000569406 NDUFA11Q86Y39 141 aa8.46□□□□□ -1.06
CLK3-226ENST00000569406 PRR7Q8TB68 274 aa8.46□□□□□ -1.06
CLK3-226ENST00000569406 ITLN1Q8WWA0 313 aa8.46□□□□□ -1.06
CLK3-226ENST00000569406 MRPL20Q9BYC9 149 aaKnown RBP8.46□□□□□ -1.06
CLK3-226ENST00000569406 SPANXCQ9NY87 97 aa8.46□□□□□ -1.06
CLK3-226ENST00000569406 COL6A6A6NMZ7 2263 aa8.45□□□□□ -1.06
CLK3-226ENST00000569406 VPS13CQ709C8 3753 aa8.45□□□□□ -1.06
CLK3-226ENST00000569406 J3QQQ9 107 aa8.45□□□□□ -1.06
CLK3-226ENST00000569406 GFRA3O60609 400 aa8.45□□□□□ -1.06
CLK3-226ENST00000569406 C8orf31Q8N9H6 132 aa8.45□□□□□ -1.06
CLK3-226ENST00000569406 PRSS22Q9GZN4 317 aa8.45□□□□□ -1.06
CLK3-226ENST00000569406 ZNF71Q9NQZ8 489 aaPredicted RBP8.45□□□□□ -1.06
CLK3-226ENST00000569406 ZGRF1Q86YA3 2104 aa8.45□□□□□ -1.06
CLK3-226ENST00000569406 GFRA4Q9GZZ7 299 aa8.45□□□□□ -1.06
CLK3-226ENST00000569406 TPSG1Q9NRR2 321 aa8.45□□□□□ -1.06
CLK3-226ENST00000569406 ZNF492Q9P255 531 aa8.45□□□□□ -1.06
CLK3-226ENST00000569406 TET2Q6N021 2002 aaPredicted RBP8.45□□□□□ -1.06
CLK3-226ENST00000569406 IGHV1-18A0A0C4DH31 117 aa8.45□□□□□ -1.06
CLK3-226ENST00000569406 SHISA9B4DS77 424 aa8.45□□□□□ -1.06
CLK3-226ENST00000569406 CT83Q5H943 113 aa8.45□□□□□ -1.06
CLK3-226ENST00000569406 SLC25A48Q6ZT89 311 aaKnown RBP8.45□□□□□ -1.06
CLK3-226ENST00000569406 A0A0U1RRA0 63 aa8.44□□□□□ -1.06
CLK3-226ENST00000569406 NBL1P41271 181 aa8.44□□□□□ -1.06
CLK3-226ENST00000569406 UBE2D1P51668 147 aa8.44□□□□□ -1.06
CLK3-226ENST00000569406 TMEM258P61165 79 aa8.44□□□□□ -1.06
CLK3-226ENST00000569406 MYOZ3Q8TDC0 251 aa8.44□□□□□ -1.06
CLK3-226ENST00000569406 VKORC1Q9BQB6 163 aa8.44□□□□□ -1.06
CLK3-226ENST00000569406 ZMAT4Q9H898 229 aa8.44□□□□□ -1.06
CLK3-226ENST00000569406 ZNF815PA8K554 130 aa8.44□□□□□ -1.06
CLK3-226ENST00000569406 COX7A2P2O60397 106 aa8.44□□□□□ -1.06
CLK3-226ENST00000569406 CRYGAP11844 174 aa8.44□□□□□ -1.06
CLK3-226ENST00000569406 C2orf82Q6UX34 121 aa8.44□□□□□ -1.06
CLK3-226ENST00000569406 TRAV17A0A0B4J275 112 aa8.43□□□□□ -1.06
CLK3-226ENST00000569406 RITA1Q96K30 269 aa8.43□□□□□ -1.06
CLK3-226ENST00000569406 FAM215AQ9Y5M1 114 aa8.43□□□□□ -1.06
CLK3-226ENST00000569406 RAI1Q7Z5J4 1906 aaPredicted RBP8.43□□□□□ -1.06
CLK3-226ENST00000569406 NAV3Q8IVL0 2385 aa8.43□□□□□ -1.06
CLK3-226ENST00000569406 SLC25A16P16260 332 aa8.43□□□□□ -1.06
CLK3-226ENST00000569406 PRDX2P32119 198 aa8.43□□□□□ -1.06
CLK3-226ENST00000569406 TCF15Q12870 199 aa8.43□□□□□ -1.06
CLK3-226ENST00000569406 CD177Q8N6Q3 437 aa8.43□□□□□ -1.06
CLK3-226ENST00000569406 RETNQ9HD89 108 aa8.43□□□□□ -1.06
CLK3-226ENST00000569406 FOXA2Q9Y261 457 aaPredicted RBP8.43□□□□□ -1.06
CLK3-226ENST00000569406 M0R1B8 84 aa8.43□□□□□ -1.06
CLK3-226ENST00000569406 TMEM170BQ5T4T1 132 aa8.43□□□□□ -1.06
CLK3-226ENST00000569406 C1orf229Q6ZS94 237 aaPredicted RBP8.43□□□□□ -1.06
CLK3-226ENST00000569406 PRSS46E5RG02 174 aa8.42□□□□□ -1.06
CLK3-226ENST00000569406 MLANAQ16655 118 aa8.42□□□□□ -1.06
CLK3-226ENST00000569406 PRNTQ86SH4 94 aa8.42□□□□□ -1.06
CLK3-226ENST00000569406 BRK1Q8WUW1 75 aa8.42□□□□□ -1.06
CLK3-226ENST00000569406 SLC25A15Q9Y619 301 aa8.42□□□□□ -1.06
CLK3-226ENST00000569406 EBI3Q14213 229 aa8.42□□□□□ -1.06
CLK3-226ENST00000569406 LINC01620Q4KN68 170 aa8.42□□□□□ -1.06
CLK3-226ENST00000569406 HRNRQ86YZ3 2850 aaPredicted RBP8.42□□□□□ -1.06
CLK3-226ENST00000569406 RPL13AP40429 203 aaKnown RBP8.42□□□□□ -1.06
CLK3-226ENST00000569406 GOLT1AQ6ZVE7 132 aa8.42□□□□□ -1.06
CLK3-226ENST00000569406 DTX2Q86UW9 622 aa8.42□□□□□ -1.06
CLK3-226ENST00000569406 SRRM4A7MD48 611 aaKnown RBP8.41□□□□□ -1.06
CLK3-226ENST00000569406 FAM90A1Q86YD7 464 aa8.41□□□□□ -1.06
CLK3-226ENST00000569406 IGKV1D-17A0A075B6S4 117 aa8.41□□□□□ -1.06
CLK3-226ENST00000569406 H7C1H1 209 aa8.41□□□□□ -1.06
CLK3-226ENST00000569406 PLEKHB2Q96CS7 222 aa8.41□□□□□ -1.06
CLK3-226ENST00000569406 CXXC4Q9H2H0 198 aa8.41□□□□□ -1.06
CLK3-226ENST00000569406 PRO1854Q9UHT4 67 aa8.41□□□□□ -1.06
CLK3-226ENST00000569406 SSUH2Q9Y2M2 353 aa8.41□□□□□ -1.06
CLK3-226ENST00000569406 MRPL51Q4U2R6 128 aaKnown RBP8.41□□□□□ -1.06
CLK3-226ENST00000569406 KLRB1Q12918 225 aa8.4□□□□□ -1.06
CLK3-226ENST00000569406 FAM167A-AS1Q96KT0 104 aa8.4□□□□□ -1.06
CLK3-226ENST00000569406 MLST8Q9BVC4 326 aa8.4□□□□□ -1.06
CLK3-226ENST00000569406 IGKV1OR2-108A0A075B7D4 117 aa8.4□□□□□ -1.06
CLK3-226ENST00000569406 ATXN8Q156A1 80 aa8.4□□□□□ -1.06
CLK3-226ENST00000569406 DEFB109BQ30KR1 87 aa8.4□□□□□ -1.06
CLK3-226ENST00000569406 IGFL3Q6UXB1 125 aa8.4□□□□□ -1.06
CLK3-226ENST00000569406 EEF1AKMT3Q96AZ1 226 aa8.4□□□□□ -1.06
CLK3-226ENST00000569406 CFC1BP0CG36 223 aa8.4□□□□□ -1.07
CLK3-226ENST00000569406 CFC1P0CG37 223 aa8.4□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms