RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 M0R233 179 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 CCL25O15444 150 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 YPEL1O60688 119 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 PITX3O75364 302 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 IFNA17P01571 189 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 TRACP01848 142 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 PMP2P02689 132 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 CRPP02741 224 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 RBP4P02753 201 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 CD2P06729 351 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 CD14P08571 375 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 MIFP14174 115 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 TPPP2P59282 170 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 GNG2P59768 71 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 BLCAPP62952 87 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 ERHP84090 104 aaKnown RBP0.62□□□□□ -2.31
VPS35-207ENST00000568191 CDK6Q00534 326 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 CIRBPQ14011 172 aaKnown RBP0.62□□□□□ -2.31
VPS35-207ENST00000568191 ZNF345Q14585 488 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 C1orf134Q5TEV5 83 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 ARPINQ7Z6K5 226 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 OR5AS1Q8N127 324 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 C10orf111Q8N326 155 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 FAM19A2Q8N3H0 131 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 KCNRGQ8N5I3 272 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 ACBD7Q8N6N7 88 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 OR8B3Q8NGG8 313 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 OR5AK2Q8NH90 309 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 OTOSQ8NHW6 89 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 DPH3Q96FX2 82 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 HYLS1Q96M11 299 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 NABP2Q9BQ15 211 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 Q9BRP9 147 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 SLC50A1Q9BRV3 221 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 CXCL16Q9H2A7 254 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 PSORS1C2Q9UIG4 136 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 TPRKBQ9Y3C4 175 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 MPC1Q9Y5U8 109 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 LY96Q9Y6Y9 160 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 MYO7AQ13402 2215 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 MAPKBP1O60336 1514 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 CASZ1Q86V15 1759 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 COL4A5P29400 1685 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 PTPRDP23468 1912 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 SPHKAPQ2M3C7 1700 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 ABCA3Q99758 1704 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 KIAA1551Q9HCM1 1747 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 KTN1Q86UP2 1357 aaKnown RBP0.61□□□□□ -2.31
VPS35-207ENST00000568191 NAV3Q8IVL0 2385 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 CC2D2AQ9P2K1 1620 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 LAMB1P07942 1786 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 TRAV30A0A087WSZ9 112 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 IGHV1-24A0A0C4DH33 117 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 A0A0G2JQZ4 141 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 C3orf85A0A1B0GTC6 90 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 PVALEFA0A1B0GWK0 134 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 IBA57-AS1B1ANH7 110 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 ZNF736B4DX44 427 aaPredicted RBP0.61□□□□□ -2.31
VPS35-207ENST00000568191 C5orf67F2Z3F1 127 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 H3BRN7 92 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 M0R143 59 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 M0R2P5 195 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 PROSCO94903 275 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 TNFP01375 233 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 ASAH2BP0C7U1 165 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 BAALC-AS2P0C853 105 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 HIST1H1DP16402 221 aaKnown RBP0.61□□□□□ -2.31
VPS35-207ENST00000568191 CKS2P33552 79 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 ETV6P41212 452 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 SSR2P43308 183 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 DSCR4P56555 118 aaPredicted RBP0.61□□□□□ -2.31
VPS35-207ENST00000568191 PKIAP61925 76 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 HSD52Q0P140 79 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 ZNF846Q147U1 533 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 DEFB113Q30KQ7 82 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 ZNF791Q3KP31 576 aaPredicted RBP0.61□□□□□ -2.31
VPS35-207ENST00000568191 ASB16-AS1Q495Z4 193 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 NCMAPQ5T1S8 102 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 LINC01545Q5VT33 79 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 MIC13Q5XKP0 118 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 GTF2H5Q6ZYL4 71 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 GKN2Q86XP6 184 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 LINC00269Q8N2A0 174 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 OR4X2Q8NGF9 303 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 OR2T35Q8NGX2 323 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 ATP6V0E2Q8NHE4 81 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 COPS9Q8WXC6 57 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 PSMF1Q92530 271 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 LSM10Q969L4 123 aaKnown RBP0.61□□□□□ -2.31
VPS35-207ENST00000568191 RAB37Q96AX2 223 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 MUCL1Q96DR8 90 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 MRPL57Q9BQC6 102 aaKnown RBP0.61□□□□□ -2.31
VPS35-207ENST00000568191 SEC11CQ9BY50 192 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 AGPAT4-IT1Q9H0P7 198 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 CST11Q9H112 138 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 NAA60Q9H7X0 242 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 SAR1AQ9NR31 198 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 RPRMQ9NS64 109 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 NDUFB11Q9NX14 153 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 PRO2289Q9P1D8 64 aa0.61□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms