RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 ALMS1Q8TCU4 4167 aa13.83□□□□□ -0.2
CLN3-225ENST00000566824 TEX48A0A1B0GUV7 120 aa13.83□□□□□ -0.2
CLN3-225ENST00000566824 GAGE12BA1L429 117 aa13.83□□□□□ -0.2
CLN3-225ENST00000566824 GAGE7O76087 117 aa13.83□□□□□ -0.2
CLN3-225ENST00000566824 TYMSP04818 313 aa13.83□□□□□ -0.2
CLN3-225ENST00000566824 GAGE12FP0CL80 117 aa13.83□□□□□ -0.2
CLN3-225ENST00000566824 GAGE12GP0CL81 117 aa13.83□□□□□ -0.2
CLN3-225ENST00000566824 GAGE12IP0CL82 117 aa13.83□□□□□ -0.2
CLN3-225ENST00000566824 TCL1AP56279 114 aa13.83□□□□□ -0.2
CLN3-225ENST00000566824 DAZ2Q13117 558 aaKnown RBP13.83□□□□□ -0.2
CLN3-225ENST00000566824 COX8CQ7Z4L0 72 aa13.83□□□□□ -0.2
CLN3-225ENST00000566824 VAX2Q9UIW0 290 aa13.83□□□□□ -0.2
CLN3-225ENST00000566824 DNAH1Q9P2D7 4330 aa13.82□□□□□ -0.2
CLN3-225ENST00000566824 IGHV3-16A0A0C4DH30 117 aa13.82□□□□□ -0.2
CLN3-225ENST00000566824 RPL35P42766 123 aaKnown RBP13.82□□□□□ -0.2
CLN3-225ENST00000566824 IBA57Q5T440 356 aaKnown RBP13.82□□□□□ -0.2
CLN3-225ENST00000566824 MRPL16Q9NX20 251 aaKnown RBP13.82□□□□□ -0.2
CLN3-225ENST00000566824 MUC4Q99102 2169 aa13.81□□□□□ -0.2
CLN3-225ENST00000566824 IGKV3D-20A0A0C4DH25 116 aa13.81□□□□□ -0.2
CLN3-225ENST00000566824 RAB19A4D1S5 217 aa13.81□□□□□ -0.2
CLN3-225ENST00000566824 SH2D1AO60880 128 aa13.81□□□□□ -0.2
CLN3-225ENST00000566824 ZNF575Q86XF7 245 aa13.81□□□□□ -0.2
CLN3-225ENST00000566824 TXNDC17Q9BRA2 123 aa13.81□□□□□ -0.2
CLN3-225ENST00000566824 MLST8Q9BVC4 326 aa13.81□□□□□ -0.2
CLN3-225ENST00000566824 SACSQ9NZJ4 4579 aa13.81□□□□□ -0.2
CLN3-225ENST00000566824 RBFOX3A6NFN3 312 aa13.8□□□□□ -0.2
CLN3-225ENST00000566824 IGLL5B9A064 214 aa13.8□□□□□ -0.2
CLN3-225ENST00000566824 SPINK4O60575 86 aa13.8□□□□□ -0.2
CLN3-225ENST00000566824 ZNF415Q09FC8 603 aa13.8□□□□□ -0.2
CLN3-225ENST00000566824 BAGE2Q86Y30 109 aa13.8□□□□□ -0.2
CLN3-225ENST00000566824 KLK5Q9Y337 293 aaPredicted RBP13.8□□□□□ -0.2
CLN3-225ENST00000566824 TRGV11A0A075B6L2 103 aa13.79□□□□□ -0.2
CLN3-225ENST00000566824 TRGV1A0A0A0MS02 117 aa13.79□□□□□ -0.2
CLN3-225ENST00000566824 FABP5P3A8MUU1 101 aa13.79□□□□□ -0.2
CLN3-225ENST00000566824 S100A9P06702 114 aaKnown RBP13.79□□□□□ -0.2
CLN3-225ENST00000566824 SDF2L1Q9HCN8 221 aa13.79□□□□□ -0.2
CLN3-225ENST00000566824 MED9Q9NWA0 146 aa13.79□□□□□ -0.2
CLN3-225ENST00000566824 TRBV20OR9-2A0A075B6H5 130 aa13.78□□□□□ -0.2
CLN3-225ENST00000566824 PDE6DO43924 150 aa13.78□□□□□ -0.2
CLN3-225ENST00000566824 IGLV2-8P01709 118 aa13.78□□□□□ -0.2
CLN3-225ENST00000566824 ZNF674Q2M3X9 581 aa13.78□□□□□ -0.2
CLN3-225ENST00000566824 CENPWQ5EE01 88 aa13.78□□□□□ -0.2
CLN3-225ENST00000566824 TOR2AQ5JU69 321 aa13.78□□□□□ -0.2
CLN3-225ENST00000566824 ZNF506Q5JVG8 444 aa13.78□□□□□ -0.2
CLN3-225ENST00000566824 APLNQ9ULZ1 77 aa13.78□□□□□ -0.2
CLN3-225ENST00000566824 IGHV4-4A0A075B6R2 117 aa13.77□□□□□ -0.21
CLN3-225ENST00000566824 PGPEP1LA6NFU8 196 aa13.77□□□□□ -0.21
CLN3-225ENST00000566824 M0R036 132 aa13.77□□□□□ -0.21
CLN3-225ENST00000566824 FAM162BQ5T6X4 162 aa13.77□□□□□ -0.21
CLN3-225ENST00000566824 KCNS1Q96KK3 526 aa13.77□□□□□ -0.21
CLN3-225ENST00000566824 RYR2Q92736 4967 aa13.76□□□□□ -0.21
CLN3-225ENST00000566824 KRBOX1C9JBD0 128 aa13.76□□□□□ -0.21
CLN3-225ENST00000566824 HOXA5P20719 270 aa13.76□□□□□ -0.21
CLN3-225ENST00000566824 NACAE9PAV3 2078 aa13.75□□□□□ -0.21
CLN3-225ENST00000566824 RYR3Q15413 4870 aa13.75□□□□□ -0.21
CLN3-225ENST00000566824 F5H768 121 aa13.75□□□□□ -0.21
CLN3-225ENST00000566824 ORM1P02763 201 aa13.75□□□□□ -0.21
CLN3-225ENST00000566824 ATP5G1P05496 136 aa13.75□□□□□ -0.21
CLN3-225ENST00000566824 RNASE3P12724 160 aaKnown RBP13.75□□□□□ -0.21
CLN3-225ENST00000566824 TAGLN2P37802 199 aaKnown RBP13.75□□□□□ -0.21
CLN3-225ENST00000566824 FAM210AQ96ND0 272 aa13.75□□□□□ -0.21
CLN3-225ENST00000566824 VPS13DQ5THJ4 4388 aa13.74□□□□□ -0.21
CLN3-225ENST00000566824 TMSB15BA0A087X1C1 80 aa13.74□□□□□ -0.21
CLN3-225ENST00000566824 GRIFINA4D1Z8 144 aa13.74□□□□□ -0.21
CLN3-225ENST00000566824 B4DEV8 164 aa13.74□□□□□ -0.21
CLN3-225ENST00000566824 PRR27Q6MZM9 219 aa13.74□□□□□ -0.21
CLN3-225ENST00000566824 TMEM88Q6PEY1 159 aa13.74□□□□□ -0.21
CLN3-225ENST00000566824 C9orf85Q96MD7 179 aa13.74□□□□□ -0.21
CLN3-225ENST00000566824 IGHV3-53P01767 116 aa13.73□□□□□ -0.21
CLN3-225ENST00000566824 RPL19P84098 196 aaKnown RBP13.73□□□□□ -0.21
CLN3-225ENST00000566824 SPXQ9BT56 116 aa13.73□□□□□ -0.21
CLN3-225ENST00000566824 HYDINQ4G0P3 5121 aa13.73□□□□□ -0.21
CLN3-225ENST00000566824 TRGV2A0A075B6R0 118 aa13.72□□□□□ -0.21
CLN3-225ENST00000566824 LCE6AA0A183 80 aa13.72□□□□□ -0.21
CLN3-225ENST00000566824 SRSF3P84103 164 aaKnown RBP13.72□□□□□ -0.21
CLN3-225ENST00000566824 IFITM2Q01629 132 aa13.72□□□□□ -0.21
CLN3-225ENST00000566824 LGALS9BQ3B8N2 356 aa13.72□□□□□ -0.21
CLN3-225ENST00000566824 LINC01559Q495D7 138 aa13.72□□□□□ -0.21
CLN3-225ENST00000566824 POM121L12Q8N7R1 296 aa13.72□□□□□ -0.21
CLN3-225ENST00000566824 EIF5A2Q9GZV4 153 aaKnown RBP13.72□□□□□ -0.21
CLN3-225ENST00000566824 C9JQL5 133 aa13.71□□□□□ -0.21
CLN3-225ENST00000566824 GNG4P50150 75 aa13.71□□□□□ -0.21
CLN3-225ENST00000566824 RASL10AQ92737 203 aa13.71□□□□□ -0.21
CLN3-225ENST00000566824 C18orf15Q96N68 181 aa13.71□□□□□ -0.21
CLN3-225ENST00000566824 PARLQ9H300 379 aa13.71□□□□□ -0.21
CLN3-225ENST00000566824 TMEM250H0YL14 139 aa13.7□□□□□ -0.22
CLN3-225ENST00000566824 M0R2P5 195 aa13.7□□□□□ -0.22
CLN3-225ENST00000566824 SRP19P09132 144 aaKnown RBP13.7□□□□□ -0.22
CLN3-225ENST00000566824 MGST1P10620 155 aaKnown RBP13.7□□□□□ -0.22
CLN3-225ENST00000566824 CEBPGP53567 150 aa13.7□□□□□ -0.22
CLN3-225ENST00000566824 C9JCJ5 164 aa13.69□□□□□ -0.22
CLN3-225ENST00000566824 H3BVH4 76 aa13.69□□□□□ -0.22
CLN3-225ENST00000566824 SFTA3P0C7M3 94 aa13.69□□□□□ -0.22
CLN3-225ENST00000566824 ASIPP42127 132 aa13.69□□□□□ -0.22
CLN3-225ENST00000566824 OR5I1Q13606 314 aa13.69□□□□□ -0.22
CLN3-225ENST00000566824 LINC00476Q8WZB0 136 aa13.69□□□□□ -0.22
CLN3-225ENST00000566824 ZNF479Q96JC4 524 aa13.69□□□□□ -0.22
CLN3-225ENST00000566824 NDUFAF3Q9BU61 184 aa13.69□□□□□ -0.22
CLN3-225ENST00000566824 K7EN84 100 aa13.68□□□□□ -0.22
CLN3-225ENST00000566824 DNLZQ5SXM8 178 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms